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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97426_cuf1 >transcript:BL97426_cuf1-protein ID=transcript:BL97426_cuf1-protein|Name=transcript:BL97426_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=155bp
MWAHVLLVVSLLMVPGASASELSIFAIPSIGFSVGLTCICFMIFCCCINK
RAQQNGPVYYTGSGPSHTTAQNIGMRPTGVQNSTFTPEQQPAFNPQYSPA
YNPQALPTVAYRPGAAAYPPPPTYPPSTAPLNSPSAYPPSPNLSPPPAYE
DVTSS Run BLAST on NCBI mRNA from alignment at Sc0000055:958848..967175- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97426_cuf1 ID=transcript:BL97426_cuf1|Name=transcript:BL97426_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=8328bp|location=Sequence derived from alignment at Sc0000055:958848..967175- (Branchiostoma lanceolatum)
CAGAGTTTGAGTCTTTGCCAAGTACTGTACTGTATGCAAATTCATGACAG
CATGTACCGTAAATAGCACTGACTCTATAAGGGAGTGTCAAACCATACAG
ACACAGCTCTGAAAGCACTTCGTTTACGGTATACGTGCATGTGTCGATGT
GAGTGAATCTATTTCACGTCGCTCTATCGCCTGGTGTGTCGTTTTGTCTT
TGATCGCGCTACAGAGACACAGCCCAGCACGACGGAAATAATCTGTTGAG
GTCAGACCTTCAGAGTCAAAGAAACCTTCAGAAAGAATGTGGGCGCACGT
ACTGCTTGTGGTGTCACTCCTTATGGTCCCGGGTGCATCTGCCTCAGGTA
TGTTATTTTGCTCTAGGTGTTTGGCTAGAGTAAGGTCAGTGGGCTGATTT
TACCTAGGCATTCTTAACTATGTCTATAACACGGTGGAGATACCATTTGT
TTTGAACCAACGTAACATCTAAATGGTGAACAAATCGGTTGGCATACACA
TTTAGCTACCAGTGATTCTACCGTTATCAAATACACTCCTCCCCAGTGGC
ACCTAACAGTGGTGAATTCGAATATACATTGATACTTCTACCTAAGGGGG
AGGGCCACTGTAAATTCTAATGCAGTGAACATGGCTGTCGCGACATGCAC
AGGCCACAGAAGTAGTTCAACCACTTTGTCTATTTAAAGAAAATCGCCAA
AGAATCCAAAAGGGTAAGGTCGCATGCCCCAGCCCTAGTTTTTTCTGCTG
TGAATAAACTAATTTTAGGCATTCGTGCAATTCTTTGTTTCTTTTGACAG
AAGATTAAGGAAATTTTCCTTTGATGCAGCTTTCTTTTCTGATTTCCACA
TATTCATTTATCCATGGAGTTNGTATATATTATAAACTATATATGGCATT
TATGTGCGCGAAATTATACAGATTTGCTTGTGTGAAAAGGTAATTATACA
TTGAATCATTATGGTAAACTCTCAACAAATATCCATTAAATTTGTCTATC
AATAGCACAATGAATGTATTCTAAAAAGTCATTATTCTAATTGTATTATA
AAGTTTTGTGATATCATAATTGATGTAACCAAAGATGTGGTCACCTGTAT
TTATACATGACGAATCACTTGTATTCGATTCAGTTAATTGAATTTGAAGA
GGCCCCTTTTCCTTTTGTTTAAAGAAATATGACGTTACCTCGCCATAATG
ACCATAGTGAAAAAACTCTAAATCTAATATGCTGACATATCTGATGCAGT
ATTACATGCTAACTTGTCTGATGCAGTATTATATTAGTTTATCACAACTA
AAATGTATTGAGATTTTGATTCATATGTTGCCATGATTGTTGATTTTCTG
ATGAAAAAGAATTATGTAAGGTGCTCTCTGAGCTTTCCGTATACATGTAT
TTAGTTTGTTACCAGGGTAGCCCAACTCAGTTGTGTGACAACGCCTTTGT
AATGGTTCCTTTGGTCACAAATGATACAAACAAACAAACAAATTTAACAT
ACATTTGATTATAGTAACAATTGTAAAATTATACTAATGGATCATGCTTA
TGCATATATGTTTATCATGTCAGAGGAATTATGTATTGAATCAAAGATTC
AAATAAAGCTTATTCTACTTTTTTAGTATTGGCTGTCTAATGTGTGGATA
ATCTCTTCTCTCGTGTTAAAGTTACACACAATAGGGACCTCTTTCGTAGA
TACCTTTGAAGATAAGTGTTAGATATGTGTGCTTCTATGTTACAAAACGT
TTATGTTTGAGGTTAAAAGTATTTTTTTCTCGAGGAGGAGACAAACTCCG
TTTGTAAAAGCACGATTGTATAGTGCATTAGGCTCTCACCTCAAACTAAA
TTTAATTCTAGGTGGCCCAAACTTAAGTCACTTCTTTCCAAACACAAGGG
CTATCTACCACCCGAAAACCGTGACCATAGCTTGTTTAAACACCCGATAT
CAAAATCGCAGTACCAAGCATAGCCACAAGGGGTCCCAAAATATATCTAT
ATATCATATATGCAACCAATTCATTCAGCTAGACACACACAAAAGCTACC
TGAAATATAGCCTCCATTTTTTCATGGAGGTAAAGATGTATATCTGTCAA
GGCCTTGTTTGAGACAATGATGAATGGCTAGAAAATAGCCCCTGGCGATG
CAGAGACCAATGATCTAGACCAGAGTTTGAGTCTTTGCCAAGTACTGTAC
TGTATGCAAATTCATGACAGCATGTACCGTAAATAGCACTGACTCTATAA
GGGAGTGTCAAACCATACAGACACAGCTCTGAAAGCACTTCGTTTACGGT
ATACGTGCATGTGTCGATGTGAGTGAATCTATTTCACGTCGCTCTATCGC
CTGGTGTGTCGTTTTGTCTTTGATCGCGCTACAGAGACACAGCCCAGCAC
GACGGAAATAATCTGTTGAGGTCAGACCTTCAGAGTCAAAGAAACCTTCA
GAAAGAATGTGGGCGCACGTACTGCTTGTGGTGTCACTCCTTATGGTCCC
GGGTGCATCTGCCTCAGGTATGTTATTTTGCTCTAGGTGTTTGGCTAGAG
TAAGGTCAGTGGGCTGATTTTACCTAGGCATTCTTAACTATGTCTATAAC
ACGGTGGAGATACCATTTGTTTTGAACCAACGTAACATCTAAATGGTGAA
CAAATCGGTTGGCATACACATTTAGCTACCAGTGATTCTACCGTTATCAA
ATACACTCCTCCCCAGTGGCACCTAACAGTGGTGAATTCGAATATACATT
GATACTTCTACCTAAGGGGGAGGGCCACTGTAAATTCTAATGCAGTGAAC
ATGGCTGTCGCGACATGCACAGGCCACAGAAGTAGTTCAACCACTTTGTC
TATTTAAAGAAAATCGCCAAAGAATCCAAAAGGGTAAGGTCGCATGCCCC
AGCCCTAGTTTTTTCTGCTGTGAATAAACTAATTTTAGGCATTCGTGCAA
TTCTTTGTTTCTTTTGACAGAAGATTAAGGAAATTTTCCTTTGATGCAGC
TTTCTTTTCTGATTTCCACATATTCATTTATCCATGGAGTTGTTGCAAAC
TGGGCTTTGTAATATGTCACATACTAGTAATTTACAACTTTTTCTTTTCA
CAGAACTGTCGATCTTTGCCATTCCCAGCATTGGCTTCTCTGTAGGCCTG
ACCTGTATTTGTTTTATGATTTTTTGTTGCTGTATCAACAAACGAGCCCA
ACAGAACGGGCCGGTATACTATACTGGATCGGGACCGAGTCATACGACAG
CCCAGAACATCGGTATGAGGCCTACAGGAGTGCAGAACAGCACCTTTACT
CCTGAGCAGCAGCCCGCCTTTAATCCCCAGTACTCCCCTGCTTACAACCC
ACAAGCCTTGCCCACCGTGGCGTATCGACCAGGTGCTGCTGCATATCCTC
CCCCTCCCACTTACCCTCCTTCCACGGCCCCACTCAACTCTCCTTCCGCC
TACCCCCCTTCCCCAAACTTATCCCCTCCCCCAGCTTACGAAGATGTCAC
CAGCTCGTAAAAATCACCTGCTCCACAACCACTACCACATCACCACTACC
ACCAGATTCCTCCTGCGTAACCCAGCGCGTGTTCAGCCTACCCTCGGGTC
GCCTGAATATATATGAAGTTCCTCCGGATCTTACGAAGGCGATATCACCA
TGCCATCGCCGCCTTCTTCCCGACAGTCATCTTCACATGCTTCATCAACA
GACAACAGTTTCATCTACTATATATCAAACCTTTACAGACTCCATTGGTT
GCTGGAAAAAATGTTACTCTATTGCCGGCTAACTCCTTTGGAAAATTATT
TGGTTTATTGGGCCGAGTTCTACTATCGTAAGGTCTGGTAGAGACTACCC
TTTAGGTGGGTTCAGATTGCATTAGCGCAAACCTATATATATTAGTCCAC
CCGACGTCGTACCAATCTATCATCCGTCGATCTTAGATAATAGAAGTTGT
TTCACCTTTTTCCTCAAGATCCAGCTGGTAGTGCTTAAAGTATCTATGGT
GCAACCTCACCTTGTTTTATGAATTATTTGTTTTATCATTAAGGTGTCAT
CGTCAGTTAGAAACTTTAGTTCATTATCCATACTGATATCAATCATCATA
ATATCCATCATATAACCGTTCATGGTTTTAAAGCGTACTTTGTCGGAATT
CATTGGTGTGTCCTAAGATTATTGTGATTTTTCTTGAACCATATACATGT
ATCAAACAATACTAGACACCGCGTGTGCTCTCTCGGAATACAACTTTCAT
CATACCGTCTAAATATTTCGAAGTATTGCTCTGCGCTGTATATGGGAACT
AATATAGATATACACTGCAATTGTCGTCTCTGACATATGTACGAATATGC
AATGTCCTTGTCAACATTGCTCAGATTATTTGTCGGCGGTTTTCTGTTAC
TTTGCTTGAAAATAAAGTCCTGCAACATCAAAATCGTTCGACGGACTACG
ATGAATGCGACCGCACCTTATATTAAGTTATCCGCAATATTGGAACACCA
TCCGAAGAGTCTGCTGTAGAGGCTAGCTTTCTTCAGACGGATGTCGCGAT
GCCCTACGGCACAACAATTAGAGATGGAAACGTCTGTTATTCTAACTCCT
GATTCTTGACCAAACTATTTGAATCGTTTGAGAGCTACATGTACGTACGA
AGTCGGAATCAGCGAAAAGCACTAAAACGTTGAAAAAATATCAAGGGAAT
ATTACATGTCTGTATTTATGCTGATAGAGATGTTGCAGATTCGCACACAG
ATAATAGATTACGGGTGAATGAAGTTGTGATCATGATAGATGGCAAAATC
CCCGGGCTACTGTAGGCACAACGACAGTGTGACAGTGGTAAGACGGGTAT
TTTGACCTTTCATCAGATACGTTTTTAGATACGACTGTGTGCTTGGCTGG
CTGGAAACATAAGTGTTTTCTAAGCAACCAAATATCAGATTAACAGCAGC
AAGACTTGGGGCTAGAAGCCGAGAAAACAAGGTCCGACAGAATGTGGACT
GGACTGCTGACCCTGATGTTCCCGATAATGGGAACGACTTGATAGACACG
TGAGTTACCTTTTCTACAGCTCCGTTCACATAGGTGTTGGCAGGATAAGG
TCAAACTCATGATAGCTGTATGCACTCAGCAAACTATAAAAGCCTGCCTT
AGATACATTAGTCATCGTAGCTGAGGATGTCTGGACAAGAACCTTAGAAA
AGTATCGTGCCAAACGGGGTGCTATTGTAAAAAAAAATTGTCAAGGGGAG
AGGAATCTTACAAGATAATTGACAACATGGCTGACAGTATCGACAAAAGA
AAGCTGCGGAATAGTCTCGTTAATGACACAGTAACGACAACAATGTATGT
TAGTACTGTATCATGTGAGTGAAAATAGTCATGAACAAACGCCTTTGACG
TGTCTTGTACATCGACCTTGTTGTCGTCTGGCAAACAGCCAGTACAGTAG
AATCCGCTTATTTCCATAACTGATTTGTCAGTGTATTTTCTGCAATTATA
AGGAGTAGTCCATTAACCCTAGGGGACAAAATGAGCGGCACTGAGGGGGG
AGGGGGTTGTTTTGGTTACCAGGATGGCACTTGAAGGAAACACACACACT
TTGTGTCAAATTCACTCACTACTACAACTGTCACGTTGCATACTTCAAAG
ATTAACAATGGACACTTGACAGGGATTCACATGAAAAGCGTTTATTTTTC
TAACCTTCCAAATTGAATGATACAAATGTAACGTTGGGTAACATAAACTC
GCGGAGTACTTAAATTCGGGATTTTTCGAAAACGGGGTATTTAGGGATAT
GTGCTAGATGCAACATCAGTAATACCGCTAGAAATGCAAACTTGACAGAC
TAACGTATTCAGAACACTGTCTGAAAAGCTTCGATAACCATGCATTAGAA
GTTGGCTACGTCAAAAACTCTCCGTCCCTTATTGTCACAGTCTGAGGGCT
TCGTGGGAGAACTATACTACATAGTTGTTCGCTGGTTTATAAGACAAATG
TCACATCCGCTTCCTGCTCACACAATTATTTACAATACAACTTATTAGAA
TCTCTTTTGCTAACCTACAACTGGACTCTAAGTGTGATTAATCATCAAAA
CGCCTCTTTGTTGCTACAACCAATGGCTACGGCACTACGGTGAATTTTCC
CGCCGCCATATTCGTTACCCAGAATCCTGCTATTCGGCAGACGACAAACG
TTTGCGAGGAACACTTTTTTGTCTAAATGTTGTGTGTGATAGTGGACTGA
TGGCGATATTTTCCTCAAAGTTTGCTCTTAGCACAAGCAGAAACACATGG
ACATAGTAGTATTACCATTTCTACGGCATCCAGCTAACGCCCCGATGAAT
AATGTACAAATTTCCATGACGGTGGGGGTGAACTTTGAGTAGCGTTCTAC
CGACTCAACACACGGGTTGTTCCCGGAGGCCTGATGTTTGCGGTACGGCA
GTTTTTTCGGGAATTTTTTTTACTTGGACACGTCTATATCCATAGCACTC
TCCTCAAGCCAAGGATGGAACGAATAGCTGCTGTATAAAATGTAATTAGC
GGTAAGATATTCAAGACGAATCTTCTCTCCCGAATTAATGTTCACCCCTG
TCCGACAGCACCGTCATTGTGCGTGCGGCGGACGGTAATTTCAAGTTGAA
ACATTATGGTGTCAGCACGACTAGAGACAAAATCTACCATATATATGATT
AGTGCAAAGATAGTACATGATACTGACAGAATAATAGAAAAAAAGGATGG
TTTATTGTTCTGCTAGATTGATTTCAGTCAACCATTATCGGAAAAATCCC
GAATTTATGTTACCCAACGTTACCATCAGTGAACGTAGTGTGCACATGTA
TAGCCGAAATTTTAGGACGAAGATGTTAACTGTAGCACGCCTATGCGTTC
TCCGCCTCGGATGTCGTCTTAGAATATTAACATTTTCCCTTTGCAACTAA
GAACCATTATATCACATTTACTTTTCAGCATCTAACACTGTGTCCAACAA
CGCAACGATGCCCAACAACGACACGGTGCCCAACAACAACACAGTGCCCA
ACAACGAAACGATGCCCAACAACGATACAGTGCCCAACAACACAACGATG
CACAACAACGGCATTGTGCTCAACAACAACTTACTTACTTACTTAATTAT
CCTCTTCGTCCCTTCTGAGACATAAGGCTATGGCTTCTTCCCTCCATCTG
GGTCTGTCCTGTGCTAAGCTGTCAGCAGTTCTCCAGGACAAACCTATGGC
CGACAGGTCGTCTGACACTGTTCTCCTCCATGTGATCTTTGGTCTGCCTC
TTTTCCACTTTCCTGGTGGCCTCCAGTTCATGGCAACTTTGGGGATCCTA
ACTTCTGGCATCCTTAGTACATGCCCAAGCCACTTGAGTCTTCTGCATGT
GATATCAGTTGAGGGTTTTCTACATCCAGTTTTACCTGACAGTTCAACAT
TGGAGATCTTATTTGGCCAAAAGATGTTGCAGATCTTACGTAGACAACTG
CTGGGAAAAGAGTTGATCTTCCTCATATCTGTCTTCGTCATTCTCCAGCT
CTCGGAGCCGTACAGAAGAACTGATTTCACATTACTGTTGTAGATTGTTG
TCTGATTTTGTTAATTTGTTGATGAACAGGATAATTCAAGAACGACTGAA
TGAATTGGTTGTATATATGGTACATGTATATAGATATATTTTGGGACCCC
TTGTGGCTATGCTTGGTACGTCGATTTTGATATCGCGTGTTTAAACAAGA
TATGGTCACGATTTTCGGGTGGTAGATAGCCCTTGTGCTTGAAAAGAAGT
GATTGAAAGGCAATCTAAGCAATATTAGGGCATTGAAAGTCATATTTTCA
ACATTAATTTTTTAGTGATTTCTATCCATAGTAAGTTTAAATAACACTAT
CCCATTGCATACCGGTCATCATGGAGCAAAAATACAATTTCCTTTTGAGG
TGGGAACTCATTGAAAATATGAGGACTTGAAGGCTAGCCATCATGTCAAA
TATTCCGAACATACGCGATTCTGACCGATACGTCCCGAACGCTTCCGGAG
AAGTAATCACGTGGTCATGGCTCAATGTGTTCGGGCATTGTGACGTCACG
CAGTCGGAAGTTACCGACAATTGTCGACAGAAAACGGTTACTGTTGATAT
ACAGTTTGTAATATGTACACAACGTTCAACAAGGCAATCGCATATTTACA
ATATTCATAGTACATAATCTATGTTTGAACAAGTTCATGAAGGGATTGAG
GAAGACTGAGTTGGACTACGTTCTTTAAGTGGAATCTGGCGGTAGTGGTT
GAGGAGGCGATTTTGCCATGCTGAGGNN Coding sequence (CDS) from alignment at Sc0000055:958848..967175- >transcript:BL97426_cuf1 ID=transcript:BL97426_cuf1|Name=transcript:BL97426_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=936bp|location=Sequence derived from alignment at Sc0000055:958848..967175- (Branchiostoma lanceolatum)
ATGTGGGCGCACGTACTGCTTGTGGTGTCACTCCTTATGGTCCCGGGTGC
ATCTGCCTCAGAACTGTCGATCTTTGCCATTCCCAGCATTGGCTTCTCTG
TAGGCCTGACCTGTATTTGTTTTATGATTTTTTGTTGCTGTATCAACAAA
CGAGCCCAACAGAACGGGCCGGTATACTATACTGGATCGGGACCGAGTCA
TACGACAGCCCAGAACATCGGTATGAGGCCTACAGGAGTGCAGAACAGCA
CCTTTACTCCTGAGCAGCAGCCCGCCTTTAATCCCCAGTACTCCCCTGCT
TACAACCCACAAGCCTTGCCCACCGTGGCGTATCGACCAGGTGCTGCTGC
ATATCCTCCCCCTCCCACTTACCCTCCTTCCACGGCCCCACTCAACTCTC
CTTCCGCCTACCCCCCTTCCCCAAACTTATCCCCTCCCCCAGCTTACGAA
GATGTCACCAGCTCGTAAATGTGGGCGCACGTACTGCTTGTGGTGTCACT
CCTTATGGTCCCGGGTGCATCTGCCTCAGAACTGTCGATCTTTGCCATTC
CCAGCATTGGCTTCTCTGTAGGCCTGACCTGTATTTGTTTTATGATTTTT
TGTTGCTGTATCAACAAACGAGCCCAACAGAACGGGCCGGTATACTATAC
TGGATCGGGACCGAGTCATACGACAGCCCAGAACATCGGTATGAGGCCTA
CAGGAGTGCAGAACAGCACCTTTACTCCTGAGCAGCAGCCCGCCTTTAAT
CCCCAGTACTCCCCTGCTTACAACCCACAAGCCTTGCCCACCGTGGCGTA
TCGACCAGGTGCTGCTGCATATCCTCCCCCTCCCACTTACCCTCCTTCCA
CGGCCCCACTCAACTCTCCTTCCGCCTACCCCCCTTCCCCAAACTTATCC
CCTCCCCCAGCTTACGAAGATGTCACCAGCTCGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000055 | genome | Sc0000055:958848..967175 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97426_cuf1 |
| Biotype | protein_coding |
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