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transcript:BL97426_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97426_cuf1
Unique Nametranscript:BL97426_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97426_cuf1

>transcript:BL97426_cuf1-protein ID=transcript:BL97426_cuf1-protein|Name=transcript:BL97426_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=155bp
MWAHVLLVVSLLMVPGASASELSIFAIPSIGFSVGLTCICFMIFCCCINK
RAQQNGPVYYTGSGPSHTTAQNIGMRPTGVQNSTFTPEQQPAFNPQYSPA
YNPQALPTVAYRPGAAAYPPPPTYPPSTAPLNSPSAYPPSPNLSPPPAYE
DVTSS
Run BLAST on NCBI

mRNA from alignment at Sc0000055:958848..967175-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97426_cuf1 ID=transcript:BL97426_cuf1|Name=transcript:BL97426_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=8328bp|location=Sequence derived from alignment at Sc0000055:958848..967175- (Branchiostoma lanceolatum)
CAGAGTTTGAGTCTTTGCCAAGTACTGTACTGTATGCAAATTCATGACAG CATGTACCGTAAATAGCACTGACTCTATAAGGGAGTGTCAAACCATACAG ACACAGCTCTGAAAGCACTTCGTTTACGGTATACGTGCATGTGTCGATGT GAGTGAATCTATTTCACGTCGCTCTATCGCCTGGTGTGTCGTTTTGTCTT TGATCGCGCTACAGAGACACAGCCCAGCACGACGGAAATAATCTGTTGAG GTCAGACCTTCAGAGTCAAAGAAACCTTCAGAAAGAATGTGGGCGCACGT ACTGCTTGTGGTGTCACTCCTTATGGTCCCGGGTGCATCTGCCTCAGGTA TGTTATTTTGCTCTAGGTGTTTGGCTAGAGTAAGGTCAGTGGGCTGATTT TACCTAGGCATTCTTAACTATGTCTATAACACGGTGGAGATACCATTTGT TTTGAACCAACGTAACATCTAAATGGTGAACAAATCGGTTGGCATACACA TTTAGCTACCAGTGATTCTACCGTTATCAAATACACTCCTCCCCAGTGGC ACCTAACAGTGGTGAATTCGAATATACATTGATACTTCTACCTAAGGGGG AGGGCCACTGTAAATTCTAATGCAGTGAACATGGCTGTCGCGACATGCAC AGGCCACAGAAGTAGTTCAACCACTTTGTCTATTTAAAGAAAATCGCCAA AGAATCCAAAAGGGTAAGGTCGCATGCCCCAGCCCTAGTTTTTTCTGCTG TGAATAAACTAATTTTAGGCATTCGTGCAATTCTTTGTTTCTTTTGACAG AAGATTAAGGAAATTTTCCTTTGATGCAGCTTTCTTTTCTGATTTCCACA TATTCATTTATCCATGGAGTTNGTATATATTATAAACTATATATGGCATT TATGTGCGCGAAATTATACAGATTTGCTTGTGTGAAAAGGTAATTATACA TTGAATCATTATGGTAAACTCTCAACAAATATCCATTAAATTTGTCTATC AATAGCACAATGAATGTATTCTAAAAAGTCATTATTCTAATTGTATTATA AAGTTTTGTGATATCATAATTGATGTAACCAAAGATGTGGTCACCTGTAT TTATACATGACGAATCACTTGTATTCGATTCAGTTAATTGAATTTGAAGA GGCCCCTTTTCCTTTTGTTTAAAGAAATATGACGTTACCTCGCCATAATG ACCATAGTGAAAAAACTCTAAATCTAATATGCTGACATATCTGATGCAGT ATTACATGCTAACTTGTCTGATGCAGTATTATATTAGTTTATCACAACTA AAATGTATTGAGATTTTGATTCATATGTTGCCATGATTGTTGATTTTCTG ATGAAAAAGAATTATGTAAGGTGCTCTCTGAGCTTTCCGTATACATGTAT TTAGTTTGTTACCAGGGTAGCCCAACTCAGTTGTGTGACAACGCCTTTGT AATGGTTCCTTTGGTCACAAATGATACAAACAAACAAACAAATTTAACAT ACATTTGATTATAGTAACAATTGTAAAATTATACTAATGGATCATGCTTA TGCATATATGTTTATCATGTCAGAGGAATTATGTATTGAATCAAAGATTC AAATAAAGCTTATTCTACTTTTTTAGTATTGGCTGTCTAATGTGTGGATA ATCTCTTCTCTCGTGTTAAAGTTACACACAATAGGGACCTCTTTCGTAGA TACCTTTGAAGATAAGTGTTAGATATGTGTGCTTCTATGTTACAAAACGT TTATGTTTGAGGTTAAAAGTATTTTTTTCTCGAGGAGGAGACAAACTCCG TTTGTAAAAGCACGATTGTATAGTGCATTAGGCTCTCACCTCAAACTAAA TTTAATTCTAGGTGGCCCAAACTTAAGTCACTTCTTTCCAAACACAAGGG CTATCTACCACCCGAAAACCGTGACCATAGCTTGTTTAAACACCCGATAT CAAAATCGCAGTACCAAGCATAGCCACAAGGGGTCCCAAAATATATCTAT ATATCATATATGCAACCAATTCATTCAGCTAGACACACACAAAAGCTACC TGAAATATAGCCTCCATTTTTTCATGGAGGTAAAGATGTATATCTGTCAA GGCCTTGTTTGAGACAATGATGAATGGCTAGAAAATAGCCCCTGGCGATG CAGAGACCAATGATCTAGACCAGAGTTTGAGTCTTTGCCAAGTACTGTAC TGTATGCAAATTCATGACAGCATGTACCGTAAATAGCACTGACTCTATAA GGGAGTGTCAAACCATACAGACACAGCTCTGAAAGCACTTCGTTTACGGT ATACGTGCATGTGTCGATGTGAGTGAATCTATTTCACGTCGCTCTATCGC CTGGTGTGTCGTTTTGTCTTTGATCGCGCTACAGAGACACAGCCCAGCAC GACGGAAATAATCTGTTGAGGTCAGACCTTCAGAGTCAAAGAAACCTTCA GAAAGAATGTGGGCGCACGTACTGCTTGTGGTGTCACTCCTTATGGTCCC GGGTGCATCTGCCTCAGGTATGTTATTTTGCTCTAGGTGTTTGGCTAGAG TAAGGTCAGTGGGCTGATTTTACCTAGGCATTCTTAACTATGTCTATAAC ACGGTGGAGATACCATTTGTTTTGAACCAACGTAACATCTAAATGGTGAA CAAATCGGTTGGCATACACATTTAGCTACCAGTGATTCTACCGTTATCAA ATACACTCCTCCCCAGTGGCACCTAACAGTGGTGAATTCGAATATACATT GATACTTCTACCTAAGGGGGAGGGCCACTGTAAATTCTAATGCAGTGAAC ATGGCTGTCGCGACATGCACAGGCCACAGAAGTAGTTCAACCACTTTGTC TATTTAAAGAAAATCGCCAAAGAATCCAAAAGGGTAAGGTCGCATGCCCC AGCCCTAGTTTTTTCTGCTGTGAATAAACTAATTTTAGGCATTCGTGCAA TTCTTTGTTTCTTTTGACAGAAGATTAAGGAAATTTTCCTTTGATGCAGC TTTCTTTTCTGATTTCCACATATTCATTTATCCATGGAGTTGTTGCAAAC TGGGCTTTGTAATATGTCACATACTAGTAATTTACAACTTTTTCTTTTCA CAGAACTGTCGATCTTTGCCATTCCCAGCATTGGCTTCTCTGTAGGCCTG ACCTGTATTTGTTTTATGATTTTTTGTTGCTGTATCAACAAACGAGCCCA ACAGAACGGGCCGGTATACTATACTGGATCGGGACCGAGTCATACGACAG CCCAGAACATCGGTATGAGGCCTACAGGAGTGCAGAACAGCACCTTTACT CCTGAGCAGCAGCCCGCCTTTAATCCCCAGTACTCCCCTGCTTACAACCC ACAAGCCTTGCCCACCGTGGCGTATCGACCAGGTGCTGCTGCATATCCTC CCCCTCCCACTTACCCTCCTTCCACGGCCCCACTCAACTCTCCTTCCGCC TACCCCCCTTCCCCAAACTTATCCCCTCCCCCAGCTTACGAAGATGTCAC CAGCTCGTAAAAATCACCTGCTCCACAACCACTACCACATCACCACTACC ACCAGATTCCTCCTGCGTAACCCAGCGCGTGTTCAGCCTACCCTCGGGTC GCCTGAATATATATGAAGTTCCTCCGGATCTTACGAAGGCGATATCACCA TGCCATCGCCGCCTTCTTCCCGACAGTCATCTTCACATGCTTCATCAACA GACAACAGTTTCATCTACTATATATCAAACCTTTACAGACTCCATTGGTT GCTGGAAAAAATGTTACTCTATTGCCGGCTAACTCCTTTGGAAAATTATT TGGTTTATTGGGCCGAGTTCTACTATCGTAAGGTCTGGTAGAGACTACCC TTTAGGTGGGTTCAGATTGCATTAGCGCAAACCTATATATATTAGTCCAC CCGACGTCGTACCAATCTATCATCCGTCGATCTTAGATAATAGAAGTTGT TTCACCTTTTTCCTCAAGATCCAGCTGGTAGTGCTTAAAGTATCTATGGT GCAACCTCACCTTGTTTTATGAATTATTTGTTTTATCATTAAGGTGTCAT CGTCAGTTAGAAACTTTAGTTCATTATCCATACTGATATCAATCATCATA ATATCCATCATATAACCGTTCATGGTTTTAAAGCGTACTTTGTCGGAATT CATTGGTGTGTCCTAAGATTATTGTGATTTTTCTTGAACCATATACATGT ATCAAACAATACTAGACACCGCGTGTGCTCTCTCGGAATACAACTTTCAT CATACCGTCTAAATATTTCGAAGTATTGCTCTGCGCTGTATATGGGAACT AATATAGATATACACTGCAATTGTCGTCTCTGACATATGTACGAATATGC AATGTCCTTGTCAACATTGCTCAGATTATTTGTCGGCGGTTTTCTGTTAC TTTGCTTGAAAATAAAGTCCTGCAACATCAAAATCGTTCGACGGACTACG ATGAATGCGACCGCACCTTATATTAAGTTATCCGCAATATTGGAACACCA TCCGAAGAGTCTGCTGTAGAGGCTAGCTTTCTTCAGACGGATGTCGCGAT GCCCTACGGCACAACAATTAGAGATGGAAACGTCTGTTATTCTAACTCCT GATTCTTGACCAAACTATTTGAATCGTTTGAGAGCTACATGTACGTACGA AGTCGGAATCAGCGAAAAGCACTAAAACGTTGAAAAAATATCAAGGGAAT ATTACATGTCTGTATTTATGCTGATAGAGATGTTGCAGATTCGCACACAG ATAATAGATTACGGGTGAATGAAGTTGTGATCATGATAGATGGCAAAATC CCCGGGCTACTGTAGGCACAACGACAGTGTGACAGTGGTAAGACGGGTAT TTTGACCTTTCATCAGATACGTTTTTAGATACGACTGTGTGCTTGGCTGG CTGGAAACATAAGTGTTTTCTAAGCAACCAAATATCAGATTAACAGCAGC AAGACTTGGGGCTAGAAGCCGAGAAAACAAGGTCCGACAGAATGTGGACT GGACTGCTGACCCTGATGTTCCCGATAATGGGAACGACTTGATAGACACG TGAGTTACCTTTTCTACAGCTCCGTTCACATAGGTGTTGGCAGGATAAGG TCAAACTCATGATAGCTGTATGCACTCAGCAAACTATAAAAGCCTGCCTT AGATACATTAGTCATCGTAGCTGAGGATGTCTGGACAAGAACCTTAGAAA AGTATCGTGCCAAACGGGGTGCTATTGTAAAAAAAAATTGTCAAGGGGAG AGGAATCTTACAAGATAATTGACAACATGGCTGACAGTATCGACAAAAGA AAGCTGCGGAATAGTCTCGTTAATGACACAGTAACGACAACAATGTATGT TAGTACTGTATCATGTGAGTGAAAATAGTCATGAACAAACGCCTTTGACG TGTCTTGTACATCGACCTTGTTGTCGTCTGGCAAACAGCCAGTACAGTAG AATCCGCTTATTTCCATAACTGATTTGTCAGTGTATTTTCTGCAATTATA AGGAGTAGTCCATTAACCCTAGGGGACAAAATGAGCGGCACTGAGGGGGG AGGGGGTTGTTTTGGTTACCAGGATGGCACTTGAAGGAAACACACACACT TTGTGTCAAATTCACTCACTACTACAACTGTCACGTTGCATACTTCAAAG ATTAACAATGGACACTTGACAGGGATTCACATGAAAAGCGTTTATTTTTC TAACCTTCCAAATTGAATGATACAAATGTAACGTTGGGTAACATAAACTC GCGGAGTACTTAAATTCGGGATTTTTCGAAAACGGGGTATTTAGGGATAT GTGCTAGATGCAACATCAGTAATACCGCTAGAAATGCAAACTTGACAGAC TAACGTATTCAGAACACTGTCTGAAAAGCTTCGATAACCATGCATTAGAA GTTGGCTACGTCAAAAACTCTCCGTCCCTTATTGTCACAGTCTGAGGGCT TCGTGGGAGAACTATACTACATAGTTGTTCGCTGGTTTATAAGACAAATG TCACATCCGCTTCCTGCTCACACAATTATTTACAATACAACTTATTAGAA TCTCTTTTGCTAACCTACAACTGGACTCTAAGTGTGATTAATCATCAAAA CGCCTCTTTGTTGCTACAACCAATGGCTACGGCACTACGGTGAATTTTCC CGCCGCCATATTCGTTACCCAGAATCCTGCTATTCGGCAGACGACAAACG TTTGCGAGGAACACTTTTTTGTCTAAATGTTGTGTGTGATAGTGGACTGA TGGCGATATTTTCCTCAAAGTTTGCTCTTAGCACAAGCAGAAACACATGG ACATAGTAGTATTACCATTTCTACGGCATCCAGCTAACGCCCCGATGAAT AATGTACAAATTTCCATGACGGTGGGGGTGAACTTTGAGTAGCGTTCTAC CGACTCAACACACGGGTTGTTCCCGGAGGCCTGATGTTTGCGGTACGGCA GTTTTTTCGGGAATTTTTTTTACTTGGACACGTCTATATCCATAGCACTC TCCTCAAGCCAAGGATGGAACGAATAGCTGCTGTATAAAATGTAATTAGC GGTAAGATATTCAAGACGAATCTTCTCTCCCGAATTAATGTTCACCCCTG TCCGACAGCACCGTCATTGTGCGTGCGGCGGACGGTAATTTCAAGTTGAA ACATTATGGTGTCAGCACGACTAGAGACAAAATCTACCATATATATGATT AGTGCAAAGATAGTACATGATACTGACAGAATAATAGAAAAAAAGGATGG TTTATTGTTCTGCTAGATTGATTTCAGTCAACCATTATCGGAAAAATCCC GAATTTATGTTACCCAACGTTACCATCAGTGAACGTAGTGTGCACATGTA TAGCCGAAATTTTAGGACGAAGATGTTAACTGTAGCACGCCTATGCGTTC TCCGCCTCGGATGTCGTCTTAGAATATTAACATTTTCCCTTTGCAACTAA GAACCATTATATCACATTTACTTTTCAGCATCTAACACTGTGTCCAACAA CGCAACGATGCCCAACAACGACACGGTGCCCAACAACAACACAGTGCCCA ACAACGAAACGATGCCCAACAACGATACAGTGCCCAACAACACAACGATG CACAACAACGGCATTGTGCTCAACAACAACTTACTTACTTACTTAATTAT CCTCTTCGTCCCTTCTGAGACATAAGGCTATGGCTTCTTCCCTCCATCTG GGTCTGTCCTGTGCTAAGCTGTCAGCAGTTCTCCAGGACAAACCTATGGC CGACAGGTCGTCTGACACTGTTCTCCTCCATGTGATCTTTGGTCTGCCTC TTTTCCACTTTCCTGGTGGCCTCCAGTTCATGGCAACTTTGGGGATCCTA ACTTCTGGCATCCTTAGTACATGCCCAAGCCACTTGAGTCTTCTGCATGT GATATCAGTTGAGGGTTTTCTACATCCAGTTTTACCTGACAGTTCAACAT TGGAGATCTTATTTGGCCAAAAGATGTTGCAGATCTTACGTAGACAACTG CTGGGAAAAGAGTTGATCTTCCTCATATCTGTCTTCGTCATTCTCCAGCT CTCGGAGCCGTACAGAAGAACTGATTTCACATTACTGTTGTAGATTGTTG TCTGATTTTGTTAATTTGTTGATGAACAGGATAATTCAAGAACGACTGAA TGAATTGGTTGTATATATGGTACATGTATATAGATATATTTTGGGACCCC TTGTGGCTATGCTTGGTACGTCGATTTTGATATCGCGTGTTTAAACAAGA TATGGTCACGATTTTCGGGTGGTAGATAGCCCTTGTGCTTGAAAAGAAGT GATTGAAAGGCAATCTAAGCAATATTAGGGCATTGAAAGTCATATTTTCA ACATTAATTTTTTAGTGATTTCTATCCATAGTAAGTTTAAATAACACTAT CCCATTGCATACCGGTCATCATGGAGCAAAAATACAATTTCCTTTTGAGG TGGGAACTCATTGAAAATATGAGGACTTGAAGGCTAGCCATCATGTCAAA TATTCCGAACATACGCGATTCTGACCGATACGTCCCGAACGCTTCCGGAG AAGTAATCACGTGGTCATGGCTCAATGTGTTCGGGCATTGTGACGTCACG CAGTCGGAAGTTACCGACAATTGTCGACAGAAAACGGTTACTGTTGATAT ACAGTTTGTAATATGTACACAACGTTCAACAAGGCAATCGCATATTTACA ATATTCATAGTACATAATCTATGTTTGAACAAGTTCATGAAGGGATTGAG GAAGACTGAGTTGGACTACGTTCTTTAAGTGGAATCTGGCGGTAGTGGTT GAGGAGGCGATTTTGCCATGCTGAGGNN

Coding sequence (CDS) from alignment at Sc0000055:958848..967175-

>transcript:BL97426_cuf1 ID=transcript:BL97426_cuf1|Name=transcript:BL97426_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=936bp|location=Sequence derived from alignment at Sc0000055:958848..967175- (Branchiostoma lanceolatum)
ATGTGGGCGCACGTACTGCTTGTGGTGTCACTCCTTATGGTCCCGGGTGC
ATCTGCCTCAGAACTGTCGATCTTTGCCATTCCCAGCATTGGCTTCTCTG
TAGGCCTGACCTGTATTTGTTTTATGATTTTTTGTTGCTGTATCAACAAA
CGAGCCCAACAGAACGGGCCGGTATACTATACTGGATCGGGACCGAGTCA
TACGACAGCCCAGAACATCGGTATGAGGCCTACAGGAGTGCAGAACAGCA
CCTTTACTCCTGAGCAGCAGCCCGCCTTTAATCCCCAGTACTCCCCTGCT
TACAACCCACAAGCCTTGCCCACCGTGGCGTATCGACCAGGTGCTGCTGC
ATATCCTCCCCCTCCCACTTACCCTCCTTCCACGGCCCCACTCAACTCTC
CTTCCGCCTACCCCCCTTCCCCAAACTTATCCCCTCCCCCAGCTTACGAA
GATGTCACCAGCTCGTAAATGTGGGCGCACGTACTGCTTGTGGTGTCACT
CCTTATGGTCCCGGGTGCATCTGCCTCAGAACTGTCGATCTTTGCCATTC
CCAGCATTGGCTTCTCTGTAGGCCTGACCTGTATTTGTTTTATGATTTTT
TGTTGCTGTATCAACAAACGAGCCCAACAGAACGGGCCGGTATACTATAC
TGGATCGGGACCGAGTCATACGACAGCCCAGAACATCGGTATGAGGCCTA
CAGGAGTGCAGAACAGCACCTTTACTCCTGAGCAGCAGCCCGCCTTTAAT
CCCCAGTACTCCCCTGCTTACAACCCACAAGCCTTGCCCACCGTGGCGTA
TCGACCAGGTGCTGCTGCATATCCTCCCCCTCCCACTTACCCTCCTTCCA
CGGCCCCACTCAACTCTCCTTCCGCCTACCCCCCTTCCCCAAACTTATCC
CCTCCCCCAGCTTACGAAGATGTCACCAGCTCGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97426gene:BL97426Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97426_cuf1transcript:BL97426_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97426_cuf1-E1BL97426_cuf1-E1-1564476830-236075Branchiostoma lanceolatumexon
BL97426_cuf1-E2BL97426_cuf1-E2-1564476830-236072Branchiostoma lanceolatumexon
BL97426_cuf1-E3BL97426_cuf1-E3-1564476830-236069Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000055genomeSc0000055:958848..967175 -
Properties
Property NameValue
Transcript idBL97426_cuf1
Biotypeprotein_coding