transcript:BL97415_cuf9 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97415_cuf9
Unique Nametranscript:BL97415_cuf9
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97415_cuf9

>transcript:BL97415_cuf9-protein ID=transcript:BL97415_cuf9-protein|Name=transcript:BL97415_cuf9|organism=Branchiostoma lanceolatum|type=polypeptide|length=283bp
LMKIDSMSPASQLQNPCMGNRCDMNAVCIPNPVPSDCPCKQDYTCMCQPG
FTGTGYNCRSIPCHSGESMCDINGVVRMTKSASHPVNPCFSGDHMCDINA
YCVAGLANEYECKCMPGFSGTGFRCDAASPCTNHDCHPAADCVEINSFNF
MCLCGPGYAGDGRTCVLSLDQGTSTDPCEQNQCDPNAQCIPYQDRYSCRC
NQGFQGNGLQCTPELIQPYDACAQNTCDLNADCIAIGSAYTCKCQPGYIG
DGFACISDTRALSGQTRQSGVCGSAICDVNAIC
Run BLAST on NCBI

mRNA from alignment at Sc0000221:302529..306164-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97415_cuf9 ID=transcript:BL97415_cuf9|Name=transcript:BL97415_cuf9|organism=Branchiostoma lanceolatum|type=mRNA|length=3636bp|location=Sequence derived from alignment at Sc0000221:302529..306164- (Branchiostoma lanceolatum)
TTTGATGAAGATTGACTCCATGAGCCCTGCCAGCCAGCTGCAGAACCCCT GTATGGGGAACAGGTGTGACATGAACGCTGTCTGCATCCCCAACCCTGTA CCCAGCGACTGCCCCTGTAAGCAAGACTACACCTGCATGTGTCAGCCTGG CTTCACTGGAACTGGCTACAATTGTAGATGTGAGTATGTGTTCTAGATTG TTCTGCTGCAAGATTCCACTGGGGAGAGGATGGATCAAAAAAATAATATC CCAATAATTTGCACATGAATAATTTCCTTCCCTATAACTGCAACAGACTC TGTTCTTAATTGTCTTTTTAGTCAAACTCCCAAATGATTACAAAACGACA AAATAGAACGATCCTTATACAACTTGTAGTGGTCCTTCTGTAAGTGGTAA CAACTGTGTTGAGGTTGGTACATGTGTTGCCCAGTATGATTACCCAGCTG ATAAGTACCTAATTATGCTGATAATCTTTTGACCCTTTTGGCCCTTCTCA GAAGTCCAGTTGCAGGTCCATGCAAAGTTGTGTAACCAAAATAAACTTGA TTGACCCACACCATGGTTACAATTAACCCCTTGTGGTTAGGAGTGCTGTA GGAGTGATTCAGTTAACCAACATTACTTCCCTTCCAGCCATCCCCTGTCA CAGTGGGGAGAGCATGTGTGACATCAACGGAGTTGTTCGGATGACCAAGA GTGCTTCCCATCCAGTCAATCCCTGTTTCTCAGGGGATCACATGTGCGAC ATTAACGCGTATTGCGTAGCAGGGTTGGCCAATGAATACGAGTGCAAGTG CATGCCAGGGTTTTCAGGAACTGGATTCAGATGTGACGGTATGCCCAACA TTTACAGTAGTGGTTGTCCCATGTCTAGAGACAGATTGTCACCTTGCACT GCTGTGTTGTTGCTGGTGTTGTCGTTTCAACTACAATCAGATAGATATGG TGACAGCTCTGCAGAAGATTTCCTTTACTTTAGATACATTAATTGACTTG CTGAGCTCATTTGCACTGTCTACTTGTAAATCAATAGCAAATATTTGTTT TGTACTCGCATGAACGAAATAGTTAAGATTTGTGCTAATAGGTTGCTCTA TGTGCAAGCATGTCCCTATTTTGCTAAAAAGTTAAATGAAATGCATGATA TGCAGAAGCATGTATCAAAAGTGAGTGCATGATACATGTTTACTGCTTTT TAAAATGCAGTTTGTAACCTTATTTGCATGTTTGAGTCTTTTGTGTTACA AGTACACAGCTTGCTTAAGTAATGCGCCAGCTTCAGTCCTTCCTCCTGCT TACACTGCCTCTGCAACCTCCCACCTCCCCGCTTTCAGCTGCCAGCCCCT GCACAAACCATGACTGCCACCCTGCTGCTGACTGCGTAGAGATAAACTCC TTCAACTTCATGTGTCTCTGTGGCCCTGGATACGCTGGGGACGGACGCAC ATGCGTGCTGTGTAAGCATTTCTGTTGCTTTGACCCATTATTACTTCCAT GAAAGGGAGTTTCCTTGTTCCAGTAGTATAGTTTTAGTTTAGATAAACAA GAACTCGAAATTTTATCATGCCAGTCTGTGTCTTCAAAGAACTTGATCAC CACTGAGATTTTGTTCTAAATTTGTTGTAACTTTTACTTTCAGGAAGAAT ATTTTAGATGACTACTGTACTTTTGGTTTTGATTATGCATATCCCTTATC CTTGACGTGTGCAAGCTCCAATGTTCAGGGGATGGACAGATAGTGAGACA CAGTCTTCTCTGTAGTATCTTAATTTTCAAAAAATCTAATTTTGAAGTTT TTTTTCAGTGGAACGTTTATTGAAAAGAGCCATCTTTTGTGACTTGGACA GACAGGAAAACAGCATGAAATTTGATAACAGGACATCAAACACGAACTGT AAGCATTCACTGCATGTAAAATGTTCCCTCGTTTTTTGTGTCCTGCAGCT CTTGACCAGGGCACCTCAACTGACCCCTGTGAGCAGAATCAGTGTGACCC TAATGCCCAGTGCATCCCGTATCAGGACAGGTACTCATGCAGGTGCAACC AGGGGTTCCAAGGGAACGGTCTACAGTGTACACGTGAGTACAAACTGTGA TGAAACAGGTTTTACACCAATTTAGATTCATAGCTTTTTAGATGCAGTTA AGTTAGTAGTGTTATAGACATCAATAAAAGTTAGAATTGGACAAATACTT GATATCAATCCTCACTGTATGCTGTAAAAAGAAGTTGTGGTAGATGGTTC ACACAATGAAGCTAATCTGTTACTTGTGTACTTTTTCTCAAACTTGAATG CTCAAGGACGGTAGCCTTGCTTATTGGCAGCTTTTGTTTATTAGTATATC TATATGTATTGCCAAAATTCTAACTTCAGATGAGGACTGCAAGAACAAAG CTTTAAATGTCTACAGTGATGTGTCAGTAAAGCAGTTGGAAGTTAGAACT CCATGTCGGAATGTCTAATAACTTAGCCTTGAAACTTCACACAATTTACC CATAGAGCCAAAGTGTAGTAGTAACACATATTAGATTTTCAGTCCATGCT AGAAATGTCTGTGTATTAAGCCTGCCTCTAGTCTAGTCTTGTGGAACTCT ACTCGATTCACCCTGCTGCTCCTGGACACACCTTCGGCCTGTTGGAAAGC AGCGAGCATTACGGTCATTCTGACGCTGGAGAATATGACAGTAATGCCCG CTGACTTCTAATGGAGCTCCCTCTCATCACTTCTGGACACGCCTCGGATC CTCTGACTCGGCTTCTTCTCACTGAAGCAGGCACACAAGTAGCTTCCTAC TTCTTAGCCGTCTATACTGTAGTGCTGTCGTAGGAAAACACTCCCTAATA GCCTTCTGTAGTTGCTTGTAGGTTAGTGTTTCACTGCAACATGTTTAGTT CACATAGTTGATTTAATGGATAACATGAGTTTGTGTATGGTACTGTTGTC CCATTGTTTGCATGGGGGTCATTGTTAGGGGGAGAAATATTTAGCCTTTT TAGTTACGTCTGAAATGCAGCCTGTCATGAAATTTGCTACCTTTTTGTGG ATCACCTTTTCAAGGTCCCTGCATTTGCAAATGTTTCAGGACATGATTGA TACCACAGCACATGAGTTAACTTATTGGATCTGTATCCTCACAGCTGAGT TGATTCAGCCTTATGACGCCTGTGCACAGAATACCTGTGACCTGAATGCT GACTGCATAGCCATTGGGTCTGCCTACACCTGCAAGTGCCAGCCTGGGTA CATCGGCGACGGGTTCGCGTGTATTTGTAAGGAAACATCTTGTGATATAT GATGATATTTCTAGAGCAATTAAAACCATTTCCTGGTAATTCTTAACAAA ATGGGTTTTTTTTCTTCTAGATTTTGTTGATGTTGTGTCAACACTGTTGC ATGCAGTTGTTTTGATGTGTGAGTGAGAAAGGTTGCAAAACATGTTATGA TATCTAAGAAGAAGGAAGCTAAATTTCTTTCTCCCTAAGTAGCAATGTAT CATGTAGAATATGATACATGTGAGAAACCTTGCTGACTGTTCTGTTTCCC TACAGCGGATACACGTGCTTTGTCTGGTCAGACAAGGCAGTCAGGTGTGT GCGGCTCAGCGATCTGTGATGTTAACGCCATCTGTA

Coding sequence (CDS) from alignment at Sc0000221:302529..306164-

>transcript:BL97415_cuf9 ID=transcript:BL97415_cuf9|Name=transcript:BL97415_cuf9|organism=Branchiostoma lanceolatum|type=CDS|length=5094bp|location=Sequence derived from alignment at Sc0000221:302529..306164- (Branchiostoma lanceolatum)
TTGATGAAGATTGACTCCATGAGCCCTGCCAGCCAGCTGCAGAACCCCTG
TATGGGGAACAGGTGTGACATGAACGCTGTCTGCATCCCCAACCCTGTAC
CCAGCGACTGCCCCTGTAAGCAAGACTACACCTGCATGTGTCAGCCTGGC
TTCACTGGAACTGGCTACAATTGTAGATCCATCCCCTGTCACAGTGGGGA
GAGCATGTGTGACATCAACGGAGTTGTTCGGATGACCAAGAGTGCTTCCC
ATCCAGTCAATCCCTGTTTCTCAGGGGATCACATGTGCGACATTAACGCG
TATTGCGTAGCAGGGTTGGCCAATGAATACGAGTGCAAGTGCATGCCAGG
GTTTTCAGGAACTGGATTCAGATGTGACGCTGCCAGCCCCTGCACAAACC
ATGACTGCCACCCTGCTGCTGACTGCGTAGAGATAAACTCCTTCAACTTC
ATGTGTCTCTGTGGCCCTGGATACGCTGGGGACGGACGCACATGCGTGCT
GTCTCTTGACCAGGGCACCTCAACTGACCCCTGTGAGCAGAATCAGTGTG
ACCCTAATGCCCAGTGCATCCCGTATCAGGACAGGTACTCATGCAGGTGC
AACCAGGGGTTCCAAGGGAACGGTCTACAGTGTACACCTGAGTTGATTCA
GCCTTATGACGCCTGTGCACAGAATACCTGTGACCTGAATGCTGACTGCA
TAGCCATTGGGTCTGCCTACACCTGCAAGTGCCAGCCTGGGTACATCGGC
GACGGGTTCGCGTGTATTTCGGATACACGTGCTTTGTCTGGTCAGACAAG
GCAGTCAGGTGTGTGCGGCTCAGCGATCTGTGATGTTAACGCCATCTGTT
TGATGAAGATTGACTCCATGAGCCCTGCCAGCCAGCTGCAGAACCCCTGT
ATGGGGAACAGGTGTGACATGAACGCTGTCTGCATCCCCAACCCTGTACC
CAGCGACTGCCCCTGTAAGCAAGACTACACCTGCATGTGTCAGCCTGGCT
TCACTGGAACTGGCTACAATTGTAGATCCATCCCCTGTCACAGTGGGGAG
AGCATGTGTGACATCAACGGAGTTGTTCGGATGACCAAGAGTGCTTCCCA
TCCAGTCAATCCCTGTTTCTCAGGGGATCACATGTGCGACATTAACGCGT
ATTGCGTAGCAGGGTTGGCCAATGAATACGAGTGCAAGTGCATGCCAGGG
TTTTCAGGAACTGGATTCAGATGTGACGCTGCCAGCCCCTGCACAAACCA
TGACTGCCACCCTGCTGCTGACTGCGTAGAGATAAACTCCTTCAACTTCA
TGTGTCTCTGTGGCCCTGGATACGCTGGGGACGGACGCACATGCGTGCTG
TCTCTTGACCAGGGCACCTCAACTGACCCCTGTGAGCAGAATCAGTGTGA
CCCTAATGCCCAGTGCATCCCGTATCAGGACAGGTACTCATGCAGGTGCA
ACCAGGGGTTCCAAGGGAACGGTCTACAGTGTACACCTGAGTTGATTCAG
CCTTATGACGCCTGTGCACAGAATACCTGTGACCTGAATGCTGACTGCAT
AGCCATTGGGTCTGCCTACACCTGCAAGTGCCAGCCTGGGTACATCGGCG
ACGGGTTCGCGTGTATTTCGGATACACGTGCTTTGTCTGGTCAGACAAGG
CAGTCAGGTGTGTGCGGCTCAGCGATCTGTGATGTTAACGCCATCTGTTT
GATGAAGATTGACTCCATGAGCCCTGCCAGCCAGCTGCAGAACCCCTGTA
TGGGGAACAGGTGTGACATGAACGCTGTCTGCATCCCCAACCCTGTACCC
AGCGACTGCCCCTGTAAGCAAGACTACACCTGCATGTGTCAGCCTGGCTT
CACTGGAACTGGCTACAATTGTAGATCCATCCCCTGTCACAGTGGGGAGA
GCATGTGTGACATCAACGGAGTTGTTCGGATGACCAAGAGTGCTTCCCAT
CCAGTCAATCCCTGTTTCTCAGGGGATCACATGTGCGACATTAACGCGTA
TTGCGTAGCAGGGTTGGCCAATGAATACGAGTGCAAGTGCATGCCAGGGT
TTTCAGGAACTGGATTCAGATGTGACGCTGCCAGCCCCTGCACAAACCAT
GACTGCCACCCTGCTGCTGACTGCGTAGAGATAAACTCCTTCAACTTCAT
GTGTCTCTGTGGCCCTGGATACGCTGGGGACGGACGCACATGCGTGCTGT
CTCTTGACCAGGGCACCTCAACTGACCCCTGTGAGCAGAATCAGTGTGAC
CCTAATGCCCAGTGCATCCCGTATCAGGACAGGTACTCATGCAGGTGCAA
CCAGGGGTTCCAAGGGAACGGTCTACAGTGTACACCTGAGTTGATTCAGC
CTTATGACGCCTGTGCACAGAATACCTGTGACCTGAATGCTGACTGCATA
GCCATTGGGTCTGCCTACACCTGCAAGTGCCAGCCTGGGTACATCGGCGA
CGGGTTCGCGTGTATTTCGGATACACGTGCTTTGTCTGGTCAGACAAGGC
AGTCAGGTGTGTGCGGCTCAGCGATCTGTGATGTTAACGCCATCTGTTTG
ATGAAGATTGACTCCATGAGCCCTGCCAGCCAGCTGCAGAACCCCTGTAT
GGGGAACAGGTGTGACATGAACGCTGTCTGCATCCCCAACCCTGTACCCA
GCGACTGCCCCTGTAAGCAAGACTACACCTGCATGTGTCAGCCTGGCTTC
ACTGGAACTGGCTACAATTGTAGATCCATCCCCTGTCACAGTGGGGAGAG
CATGTGTGACATCAACGGAGTTGTTCGGATGACCAAGAGTGCTTCCCATC
CAGTCAATCCCTGTTTCTCAGGGGATCACATGTGCGACATTAACGCGTAT
TGCGTAGCAGGGTTGGCCAATGAATACGAGTGCAAGTGCATGCCAGGGTT
TTCAGGAACTGGATTCAGATGTGACGCTGCCAGCCCCTGCACAAACCATG
ACTGCCACCCTGCTGCTGACTGCGTAGAGATAAACTCCTTCAACTTCATG
TGTCTCTGTGGCCCTGGATACGCTGGGGACGGACGCACATGCGTGCTGTC
TCTTGACCAGGGCACCTCAACTGACCCCTGTGAGCAGAATCAGTGTGACC
CTAATGCCCAGTGCATCCCGTATCAGGACAGGTACTCATGCAGGTGCAAC
CAGGGGTTCCAAGGGAACGGTCTACAGTGTACACCTGAGTTGATTCAGCC
TTATGACGCCTGTGCACAGAATACCTGTGACCTGAATGCTGACTGCATAG
CCATTGGGTCTGCCTACACCTGCAAGTGCCAGCCTGGGTACATCGGCGAC
GGGTTCGCGTGTATTTCGGATACACGTGCTTTGTCTGGTCAGACAAGGCA
GTCAGGTGTGTGCGGCTCAGCGATCTGTGATGTTAACGCCATCTGTTTGA
TGAAGATTGACTCCATGAGCCCTGCCAGCCAGCTGCAGAACCCCTGTATG
GGGAACAGGTGTGACATGAACGCTGTCTGCATCCCCAACCCTGTACCCAG
CGACTGCCCCTGTAAGCAAGACTACACCTGCATGTGTCAGCCTGGCTTCA
CTGGAACTGGCTACAATTGTAGATCCATCCCCTGTCACAGTGGGGAGAGC
ATGTGTGACATCAACGGAGTTGTTCGGATGACCAAGAGTGCTTCCCATCC
AGTCAATCCCTGTTTCTCAGGGGATCACATGTGCGACATTAACGCGTATT
GCGTAGCAGGGTTGGCCAATGAATACGAGTGCAAGTGCATGCCAGGGTTT
TCAGGAACTGGATTCAGATGTGACGCTGCCAGCCCCTGCACAAACCATGA
CTGCCACCCTGCTGCTGACTGCGTAGAGATAAACTCCTTCAACTTCATGT
GTCTCTGTGGCCCTGGATACGCTGGGGACGGACGCACATGCGTGCTGTCT
CTTGACCAGGGCACCTCAACTGACCCCTGTGAGCAGAATCAGTGTGACCC
TAATGCCCAGTGCATCCCGTATCAGGACAGGTACTCATGCAGGTGCAACC
AGGGGTTCCAAGGGAACGGTCTACAGTGTACACCTGAGTTGATTCAGCCT
TATGACGCCTGTGCACAGAATACCTGTGACCTGAATGCTGACTGCATAGC
CATTGGGTCTGCCTACACCTGCAAGTGCCAGCCTGGGTACATCGGCGACG
GGTTCGCGTGTATTTCGGATACACGTGCTTTGTCTGGTCAGACAAGGCAG
TCAGGTGTGTGCGGCTCAGCGATCTGTGATGTTAACGCCATCTGTTTGAT
GAAGATTGACTCCATGAGCCCTGCCAGCCAGCTGCAGAACCCCTGTATGG
GGAACAGGTGTGACATGAACGCTGTCTGCATCCCCAACCCTGTACCCAGC
GACTGCCCCTGTAAGCAAGACTACACCTGCATGTGTCAGCCTGGCTTCAC
TGGAACTGGCTACAATTGTAGATCCATCCCCTGTCACAGTGGGGAGAGCA
TGTGTGACATCAACGGAGTTGTTCGGATGACCAAGAGTGCTTCCCATCCA
GTCAATCCCTGTTTCTCAGGGGATCACATGTGCGACATTAACGCGTATTG
CGTAGCAGGGTTGGCCAATGAATACGAGTGCAAGTGCATGCCAGGGTTTT
CAGGAACTGGATTCAGATGTGACGCTGCCAGCCCCTGCACAAACCATGAC
TGCCACCCTGCTGCTGACTGCGTAGAGATAAACTCCTTCAACTTCATGTG
TCTCTGTGGCCCTGGATACGCTGGGGACGGACGCACATGCGTGCTGTCTC
TTGACCAGGGCACCTCAACTGACCCCTGTGAGCAGAATCAGTGTGACCCT
AATGCCCAGTGCATCCCGTATCAGGACAGGTACTCATGCAGGTGCAACCA
GGGGTTCCAAGGGAACGGTCTACAGTGTACACCTGAGTTGATTCAGCCTT
ATGACGCCTGTGCACAGAATACCTGTGACCTGAATGCTGACTGCATAGCC
ATTGGGTCTGCCTACACCTGCAAGTGCCAGCCTGGGTACATCGGCGACGG
GTTCGCGTGTATTTCGGATACACGTGCTTTGTCTGGTCAGACAAGGCAGT
CAGGTGTGTGCGGCTCAGCGATCTGTGATGTTAACGCCATCTGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97415gene:BL97415Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97415_cuf9transcript:BL97415_cuf9-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97415_cuf9-E1BL97415_cuf9-E1-1564476830-395245Branchiostoma lanceolatumexon
BL97415_cuf9-E2BL97415_cuf9-E2-1564476830-395242Branchiostoma lanceolatumexon
BL97415_cuf9-E3BL97415_cuf9-E3-1564476830-395240Branchiostoma lanceolatumexon
BL97415_cuf9-E4BL97415_cuf9-E4-1564476830-395238Branchiostoma lanceolatumexon
BL97415_cuf9-E5BL97415_cuf9-E5-1564476830-395236Branchiostoma lanceolatumexon
BL97415_cuf9-E6BL97415_cuf9-E6-1564476830-395234Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000221genomeSc0000221:302529..306164 -
Properties
Property NameValue
Transcript idBL97415_cuf9
Biotypeprotein_coding