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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97415_cuf9 >transcript:BL97415_cuf9-protein ID=transcript:BL97415_cuf9-protein|Name=transcript:BL97415_cuf9|organism=Branchiostoma lanceolatum|type=polypeptide|length=283bp
LMKIDSMSPASQLQNPCMGNRCDMNAVCIPNPVPSDCPCKQDYTCMCQPG
FTGTGYNCRSIPCHSGESMCDINGVVRMTKSASHPVNPCFSGDHMCDINA
YCVAGLANEYECKCMPGFSGTGFRCDAASPCTNHDCHPAADCVEINSFNF
MCLCGPGYAGDGRTCVLSLDQGTSTDPCEQNQCDPNAQCIPYQDRYSCRC
NQGFQGNGLQCTPELIQPYDACAQNTCDLNADCIAIGSAYTCKCQPGYIG
DGFACISDTRALSGQTRQSGVCGSAICDVNAIC Run BLAST on NCBI mRNA from alignment at Sc0000221:302529..306164- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97415_cuf9 ID=transcript:BL97415_cuf9|Name=transcript:BL97415_cuf9|organism=Branchiostoma lanceolatum|type=mRNA|length=3636bp|location=Sequence derived from alignment at Sc0000221:302529..306164- (Branchiostoma lanceolatum)
TTTGATGAAGATTGACTCCATGAGCCCTGCCAGCCAGCTGCAGAACCCCT
GTATGGGGAACAGGTGTGACATGAACGCTGTCTGCATCCCCAACCCTGTA
CCCAGCGACTGCCCCTGTAAGCAAGACTACACCTGCATGTGTCAGCCTGG
CTTCACTGGAACTGGCTACAATTGTAGATGTGAGTATGTGTTCTAGATTG
TTCTGCTGCAAGATTCCACTGGGGAGAGGATGGATCAAAAAAATAATATC
CCAATAATTTGCACATGAATAATTTCCTTCCCTATAACTGCAACAGACTC
TGTTCTTAATTGTCTTTTTAGTCAAACTCCCAAATGATTACAAAACGACA
AAATAGAACGATCCTTATACAACTTGTAGTGGTCCTTCTGTAAGTGGTAA
CAACTGTGTTGAGGTTGGTACATGTGTTGCCCAGTATGATTACCCAGCTG
ATAAGTACCTAATTATGCTGATAATCTTTTGACCCTTTTGGCCCTTCTCA
GAAGTCCAGTTGCAGGTCCATGCAAAGTTGTGTAACCAAAATAAACTTGA
TTGACCCACACCATGGTTACAATTAACCCCTTGTGGTTAGGAGTGCTGTA
GGAGTGATTCAGTTAACCAACATTACTTCCCTTCCAGCCATCCCCTGTCA
CAGTGGGGAGAGCATGTGTGACATCAACGGAGTTGTTCGGATGACCAAGA
GTGCTTCCCATCCAGTCAATCCCTGTTTCTCAGGGGATCACATGTGCGAC
ATTAACGCGTATTGCGTAGCAGGGTTGGCCAATGAATACGAGTGCAAGTG
CATGCCAGGGTTTTCAGGAACTGGATTCAGATGTGACGGTATGCCCAACA
TTTACAGTAGTGGTTGTCCCATGTCTAGAGACAGATTGTCACCTTGCACT
GCTGTGTTGTTGCTGGTGTTGTCGTTTCAACTACAATCAGATAGATATGG
TGACAGCTCTGCAGAAGATTTCCTTTACTTTAGATACATTAATTGACTTG
CTGAGCTCATTTGCACTGTCTACTTGTAAATCAATAGCAAATATTTGTTT
TGTACTCGCATGAACGAAATAGTTAAGATTTGTGCTAATAGGTTGCTCTA
TGTGCAAGCATGTCCCTATTTTGCTAAAAAGTTAAATGAAATGCATGATA
TGCAGAAGCATGTATCAAAAGTGAGTGCATGATACATGTTTACTGCTTTT
TAAAATGCAGTTTGTAACCTTATTTGCATGTTTGAGTCTTTTGTGTTACA
AGTACACAGCTTGCTTAAGTAATGCGCCAGCTTCAGTCCTTCCTCCTGCT
TACACTGCCTCTGCAACCTCCCACCTCCCCGCTTTCAGCTGCCAGCCCCT
GCACAAACCATGACTGCCACCCTGCTGCTGACTGCGTAGAGATAAACTCC
TTCAACTTCATGTGTCTCTGTGGCCCTGGATACGCTGGGGACGGACGCAC
ATGCGTGCTGTGTAAGCATTTCTGTTGCTTTGACCCATTATTACTTCCAT
GAAAGGGAGTTTCCTTGTTCCAGTAGTATAGTTTTAGTTTAGATAAACAA
GAACTCGAAATTTTATCATGCCAGTCTGTGTCTTCAAAGAACTTGATCAC
CACTGAGATTTTGTTCTAAATTTGTTGTAACTTTTACTTTCAGGAAGAAT
ATTTTAGATGACTACTGTACTTTTGGTTTTGATTATGCATATCCCTTATC
CTTGACGTGTGCAAGCTCCAATGTTCAGGGGATGGACAGATAGTGAGACA
CAGTCTTCTCTGTAGTATCTTAATTTTCAAAAAATCTAATTTTGAAGTTT
TTTTTCAGTGGAACGTTTATTGAAAAGAGCCATCTTTTGTGACTTGGACA
GACAGGAAAACAGCATGAAATTTGATAACAGGACATCAAACACGAACTGT
AAGCATTCACTGCATGTAAAATGTTCCCTCGTTTTTTGTGTCCTGCAGCT
CTTGACCAGGGCACCTCAACTGACCCCTGTGAGCAGAATCAGTGTGACCC
TAATGCCCAGTGCATCCCGTATCAGGACAGGTACTCATGCAGGTGCAACC
AGGGGTTCCAAGGGAACGGTCTACAGTGTACACGTGAGTACAAACTGTGA
TGAAACAGGTTTTACACCAATTTAGATTCATAGCTTTTTAGATGCAGTTA
AGTTAGTAGTGTTATAGACATCAATAAAAGTTAGAATTGGACAAATACTT
GATATCAATCCTCACTGTATGCTGTAAAAAGAAGTTGTGGTAGATGGTTC
ACACAATGAAGCTAATCTGTTACTTGTGTACTTTTTCTCAAACTTGAATG
CTCAAGGACGGTAGCCTTGCTTATTGGCAGCTTTTGTTTATTAGTATATC
TATATGTATTGCCAAAATTCTAACTTCAGATGAGGACTGCAAGAACAAAG
CTTTAAATGTCTACAGTGATGTGTCAGTAAAGCAGTTGGAAGTTAGAACT
CCATGTCGGAATGTCTAATAACTTAGCCTTGAAACTTCACACAATTTACC
CATAGAGCCAAAGTGTAGTAGTAACACATATTAGATTTTCAGTCCATGCT
AGAAATGTCTGTGTATTAAGCCTGCCTCTAGTCTAGTCTTGTGGAACTCT
ACTCGATTCACCCTGCTGCTCCTGGACACACCTTCGGCCTGTTGGAAAGC
AGCGAGCATTACGGTCATTCTGACGCTGGAGAATATGACAGTAATGCCCG
CTGACTTCTAATGGAGCTCCCTCTCATCACTTCTGGACACGCCTCGGATC
CTCTGACTCGGCTTCTTCTCACTGAAGCAGGCACACAAGTAGCTTCCTAC
TTCTTAGCCGTCTATACTGTAGTGCTGTCGTAGGAAAACACTCCCTAATA
GCCTTCTGTAGTTGCTTGTAGGTTAGTGTTTCACTGCAACATGTTTAGTT
CACATAGTTGATTTAATGGATAACATGAGTTTGTGTATGGTACTGTTGTC
CCATTGTTTGCATGGGGGTCATTGTTAGGGGGAGAAATATTTAGCCTTTT
TAGTTACGTCTGAAATGCAGCCTGTCATGAAATTTGCTACCTTTTTGTGG
ATCACCTTTTCAAGGTCCCTGCATTTGCAAATGTTTCAGGACATGATTGA
TACCACAGCACATGAGTTAACTTATTGGATCTGTATCCTCACAGCTGAGT
TGATTCAGCCTTATGACGCCTGTGCACAGAATACCTGTGACCTGAATGCT
GACTGCATAGCCATTGGGTCTGCCTACACCTGCAAGTGCCAGCCTGGGTA
CATCGGCGACGGGTTCGCGTGTATTTGTAAGGAAACATCTTGTGATATAT
GATGATATTTCTAGAGCAATTAAAACCATTTCCTGGTAATTCTTAACAAA
ATGGGTTTTTTTTCTTCTAGATTTTGTTGATGTTGTGTCAACACTGTTGC
ATGCAGTTGTTTTGATGTGTGAGTGAGAAAGGTTGCAAAACATGTTATGA
TATCTAAGAAGAAGGAAGCTAAATTTCTTTCTCCCTAAGTAGCAATGTAT
CATGTAGAATATGATACATGTGAGAAACCTTGCTGACTGTTCTGTTTCCC
TACAGCGGATACACGTGCTTTGTCTGGTCAGACAAGGCAGTCAGGTGTGT
GCGGCTCAGCGATCTGTGATGTTAACGCCATCTGTA Coding sequence (CDS) from alignment at Sc0000221:302529..306164- >transcript:BL97415_cuf9 ID=transcript:BL97415_cuf9|Name=transcript:BL97415_cuf9|organism=Branchiostoma lanceolatum|type=CDS|length=5094bp|location=Sequence derived from alignment at Sc0000221:302529..306164- (Branchiostoma lanceolatum)
TTGATGAAGATTGACTCCATGAGCCCTGCCAGCCAGCTGCAGAACCCCTG
TATGGGGAACAGGTGTGACATGAACGCTGTCTGCATCCCCAACCCTGTAC
CCAGCGACTGCCCCTGTAAGCAAGACTACACCTGCATGTGTCAGCCTGGC
TTCACTGGAACTGGCTACAATTGTAGATCCATCCCCTGTCACAGTGGGGA
GAGCATGTGTGACATCAACGGAGTTGTTCGGATGACCAAGAGTGCTTCCC
ATCCAGTCAATCCCTGTTTCTCAGGGGATCACATGTGCGACATTAACGCG
TATTGCGTAGCAGGGTTGGCCAATGAATACGAGTGCAAGTGCATGCCAGG
GTTTTCAGGAACTGGATTCAGATGTGACGCTGCCAGCCCCTGCACAAACC
ATGACTGCCACCCTGCTGCTGACTGCGTAGAGATAAACTCCTTCAACTTC
ATGTGTCTCTGTGGCCCTGGATACGCTGGGGACGGACGCACATGCGTGCT
GTCTCTTGACCAGGGCACCTCAACTGACCCCTGTGAGCAGAATCAGTGTG
ACCCTAATGCCCAGTGCATCCCGTATCAGGACAGGTACTCATGCAGGTGC
AACCAGGGGTTCCAAGGGAACGGTCTACAGTGTACACCTGAGTTGATTCA
GCCTTATGACGCCTGTGCACAGAATACCTGTGACCTGAATGCTGACTGCA
TAGCCATTGGGTCTGCCTACACCTGCAAGTGCCAGCCTGGGTACATCGGC
GACGGGTTCGCGTGTATTTCGGATACACGTGCTTTGTCTGGTCAGACAAG
GCAGTCAGGTGTGTGCGGCTCAGCGATCTGTGATGTTAACGCCATCTGTT
TGATGAAGATTGACTCCATGAGCCCTGCCAGCCAGCTGCAGAACCCCTGT
ATGGGGAACAGGTGTGACATGAACGCTGTCTGCATCCCCAACCCTGTACC
CAGCGACTGCCCCTGTAAGCAAGACTACACCTGCATGTGTCAGCCTGGCT
TCACTGGAACTGGCTACAATTGTAGATCCATCCCCTGTCACAGTGGGGAG
AGCATGTGTGACATCAACGGAGTTGTTCGGATGACCAAGAGTGCTTCCCA
TCCAGTCAATCCCTGTTTCTCAGGGGATCACATGTGCGACATTAACGCGT
ATTGCGTAGCAGGGTTGGCCAATGAATACGAGTGCAAGTGCATGCCAGGG
TTTTCAGGAACTGGATTCAGATGTGACGCTGCCAGCCCCTGCACAAACCA
TGACTGCCACCCTGCTGCTGACTGCGTAGAGATAAACTCCTTCAACTTCA
TGTGTCTCTGTGGCCCTGGATACGCTGGGGACGGACGCACATGCGTGCTG
TCTCTTGACCAGGGCACCTCAACTGACCCCTGTGAGCAGAATCAGTGTGA
CCCTAATGCCCAGTGCATCCCGTATCAGGACAGGTACTCATGCAGGTGCA
ACCAGGGGTTCCAAGGGAACGGTCTACAGTGTACACCTGAGTTGATTCAG
CCTTATGACGCCTGTGCACAGAATACCTGTGACCTGAATGCTGACTGCAT
AGCCATTGGGTCTGCCTACACCTGCAAGTGCCAGCCTGGGTACATCGGCG
ACGGGTTCGCGTGTATTTCGGATACACGTGCTTTGTCTGGTCAGACAAGG
CAGTCAGGTGTGTGCGGCTCAGCGATCTGTGATGTTAACGCCATCTGTTT
GATGAAGATTGACTCCATGAGCCCTGCCAGCCAGCTGCAGAACCCCTGTA
TGGGGAACAGGTGTGACATGAACGCTGTCTGCATCCCCAACCCTGTACCC
AGCGACTGCCCCTGTAAGCAAGACTACACCTGCATGTGTCAGCCTGGCTT
CACTGGAACTGGCTACAATTGTAGATCCATCCCCTGTCACAGTGGGGAGA
GCATGTGTGACATCAACGGAGTTGTTCGGATGACCAAGAGTGCTTCCCAT
CCAGTCAATCCCTGTTTCTCAGGGGATCACATGTGCGACATTAACGCGTA
TTGCGTAGCAGGGTTGGCCAATGAATACGAGTGCAAGTGCATGCCAGGGT
TTTCAGGAACTGGATTCAGATGTGACGCTGCCAGCCCCTGCACAAACCAT
GACTGCCACCCTGCTGCTGACTGCGTAGAGATAAACTCCTTCAACTTCAT
GTGTCTCTGTGGCCCTGGATACGCTGGGGACGGACGCACATGCGTGCTGT
CTCTTGACCAGGGCACCTCAACTGACCCCTGTGAGCAGAATCAGTGTGAC
CCTAATGCCCAGTGCATCCCGTATCAGGACAGGTACTCATGCAGGTGCAA
CCAGGGGTTCCAAGGGAACGGTCTACAGTGTACACCTGAGTTGATTCAGC
CTTATGACGCCTGTGCACAGAATACCTGTGACCTGAATGCTGACTGCATA
GCCATTGGGTCTGCCTACACCTGCAAGTGCCAGCCTGGGTACATCGGCGA
CGGGTTCGCGTGTATTTCGGATACACGTGCTTTGTCTGGTCAGACAAGGC
AGTCAGGTGTGTGCGGCTCAGCGATCTGTGATGTTAACGCCATCTGTTTG
ATGAAGATTGACTCCATGAGCCCTGCCAGCCAGCTGCAGAACCCCTGTAT
GGGGAACAGGTGTGACATGAACGCTGTCTGCATCCCCAACCCTGTACCCA
GCGACTGCCCCTGTAAGCAAGACTACACCTGCATGTGTCAGCCTGGCTTC
ACTGGAACTGGCTACAATTGTAGATCCATCCCCTGTCACAGTGGGGAGAG
CATGTGTGACATCAACGGAGTTGTTCGGATGACCAAGAGTGCTTCCCATC
CAGTCAATCCCTGTTTCTCAGGGGATCACATGTGCGACATTAACGCGTAT
TGCGTAGCAGGGTTGGCCAATGAATACGAGTGCAAGTGCATGCCAGGGTT
TTCAGGAACTGGATTCAGATGTGACGCTGCCAGCCCCTGCACAAACCATG
ACTGCCACCCTGCTGCTGACTGCGTAGAGATAAACTCCTTCAACTTCATG
TGTCTCTGTGGCCCTGGATACGCTGGGGACGGACGCACATGCGTGCTGTC
TCTTGACCAGGGCACCTCAACTGACCCCTGTGAGCAGAATCAGTGTGACC
CTAATGCCCAGTGCATCCCGTATCAGGACAGGTACTCATGCAGGTGCAAC
CAGGGGTTCCAAGGGAACGGTCTACAGTGTACACCTGAGTTGATTCAGCC
TTATGACGCCTGTGCACAGAATACCTGTGACCTGAATGCTGACTGCATAG
CCATTGGGTCTGCCTACACCTGCAAGTGCCAGCCTGGGTACATCGGCGAC
GGGTTCGCGTGTATTTCGGATACACGTGCTTTGTCTGGTCAGACAAGGCA
GTCAGGTGTGTGCGGCTCAGCGATCTGTGATGTTAACGCCATCTGTTTGA
TGAAGATTGACTCCATGAGCCCTGCCAGCCAGCTGCAGAACCCCTGTATG
GGGAACAGGTGTGACATGAACGCTGTCTGCATCCCCAACCCTGTACCCAG
CGACTGCCCCTGTAAGCAAGACTACACCTGCATGTGTCAGCCTGGCTTCA
CTGGAACTGGCTACAATTGTAGATCCATCCCCTGTCACAGTGGGGAGAGC
ATGTGTGACATCAACGGAGTTGTTCGGATGACCAAGAGTGCTTCCCATCC
AGTCAATCCCTGTTTCTCAGGGGATCACATGTGCGACATTAACGCGTATT
GCGTAGCAGGGTTGGCCAATGAATACGAGTGCAAGTGCATGCCAGGGTTT
TCAGGAACTGGATTCAGATGTGACGCTGCCAGCCCCTGCACAAACCATGA
CTGCCACCCTGCTGCTGACTGCGTAGAGATAAACTCCTTCAACTTCATGT
GTCTCTGTGGCCCTGGATACGCTGGGGACGGACGCACATGCGTGCTGTCT
CTTGACCAGGGCACCTCAACTGACCCCTGTGAGCAGAATCAGTGTGACCC
TAATGCCCAGTGCATCCCGTATCAGGACAGGTACTCATGCAGGTGCAACC
AGGGGTTCCAAGGGAACGGTCTACAGTGTACACCTGAGTTGATTCAGCCT
TATGACGCCTGTGCACAGAATACCTGTGACCTGAATGCTGACTGCATAGC
CATTGGGTCTGCCTACACCTGCAAGTGCCAGCCTGGGTACATCGGCGACG
GGTTCGCGTGTATTTCGGATACACGTGCTTTGTCTGGTCAGACAAGGCAG
TCAGGTGTGTGCGGCTCAGCGATCTGTGATGTTAACGCCATCTGTTTGAT
GAAGATTGACTCCATGAGCCCTGCCAGCCAGCTGCAGAACCCCTGTATGG
GGAACAGGTGTGACATGAACGCTGTCTGCATCCCCAACCCTGTACCCAGC
GACTGCCCCTGTAAGCAAGACTACACCTGCATGTGTCAGCCTGGCTTCAC
TGGAACTGGCTACAATTGTAGATCCATCCCCTGTCACAGTGGGGAGAGCA
TGTGTGACATCAACGGAGTTGTTCGGATGACCAAGAGTGCTTCCCATCCA
GTCAATCCCTGTTTCTCAGGGGATCACATGTGCGACATTAACGCGTATTG
CGTAGCAGGGTTGGCCAATGAATACGAGTGCAAGTGCATGCCAGGGTTTT
CAGGAACTGGATTCAGATGTGACGCTGCCAGCCCCTGCACAAACCATGAC
TGCCACCCTGCTGCTGACTGCGTAGAGATAAACTCCTTCAACTTCATGTG
TCTCTGTGGCCCTGGATACGCTGGGGACGGACGCACATGCGTGCTGTCTC
TTGACCAGGGCACCTCAACTGACCCCTGTGAGCAGAATCAGTGTGACCCT
AATGCCCAGTGCATCCCGTATCAGGACAGGTACTCATGCAGGTGCAACCA
GGGGTTCCAAGGGAACGGTCTACAGTGTACACCTGAGTTGATTCAGCCTT
ATGACGCCTGTGCACAGAATACCTGTGACCTGAATGCTGACTGCATAGCC
ATTGGGTCTGCCTACACCTGCAAGTGCCAGCCTGGGTACATCGGCGACGG
GTTCGCGTGTATTTCGGATACACGTGCTTTGTCTGGTCAGACAAGGCAGT
CAGGTGTGTGCGGCTCAGCGATCTGTGATGTTAACGCCATCTGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000221 | genome | Sc0000221:302529..306164 - |
Properties
| Property Name | Value |
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| Transcript id | BL97415_cuf9 |
| Biotype | protein_coding |
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