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transcript:BL97414_cuf7 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97414_cuf7
Unique Nametranscript:BL97414_cuf7
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97414_cuf7

>transcript:BL97414_cuf7-protein ID=transcript:BL97414_cuf7-protein|Name=transcript:BL97414_cuf7|organism=Branchiostoma lanceolatum|type=polypeptide|length=210bp
MTALPNTEAPPLPDTEIPPPPDLPPPPPPVVPHHPRSGSTSSSGNSSDGV
KRPSIPPPEPPGRPSAPPPDPPKRKAPPPPRRAPTTTLSENVTLTPPSTP
PTQPKRTAPNLQIRPGSSQEGSSPEDTMQQMPQPLNTFQPRAAAQNAPQT
AQPSEISHNALAQNGAQGPVLIGPSVPNSQIVLPVAKPPPAPKPKDKKGV
FGGLFSKKKK
Run BLAST on NCBI

mRNA from alignment at Sc0000221:79118..82947+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97414_cuf7 ID=transcript:BL97414_cuf7|Name=transcript:BL97414_cuf7|organism=Branchiostoma lanceolatum|type=mRNA|length=3830bp|location=Sequence derived from alignment at Sc0000221:79118..82947+ (Branchiostoma lanceolatum)
CTTACGTGACCGGGATTCTTCATGACAGGTGACTCATGTTTCAGATGGGG AGACAGTTGGGATGCACAGCACCACCTGCATATCTAACTCTACTGTTCTG CACTTCCCATAGGTTCAGGATTCTTGCATCTGGTGAAGCACAAAAGTTGG TGTTTGCAGTGTTTGCACTTTATTCTGGTGACGATGATATCTTTAAAAAG GTTTTGTAGTTTTCAGTTGTCTCCGGAGGAAATTTTGTTCAGCACAGTTG ATTTTTACTTTTTTCTTGCACCCATTCAATTGGCACCTTTTTCTTTCTTC CAGCCTTGCCCAACACTGAGGCCCCCCCACTGCCAGACACAGAAATCCCA CCACCACCCGACCTCCCCCCTCCCCCACCCCCTGTAGTACCACACCACCC CAGAAGTGGCAGCACCAGTAGTAGCGGAAACAGTAGTGATGGCGTAAAGA GAGTAAGTGGACCTCAGTTTTATCCAATAAACTTCATTGAATTCATGTCA GCAGATTTGTACCTTTGTGTTCCTTCTGCTACCCATTACCATGCCTCTGA GTACCTGTCTAGTGTACCTACTACTGTATTTGGTCATTTGTGACGGTTAG TGCAGTACAATGCTGTGGCAAACTTCAGAGAGTGAGACCTTCCTTATGAT TTCACCATAAGATGACCAGTGGCCTTTGGAACCCATCATCCATTTGATAT CTAGATGCATTTGCAGAGAAATTGGCCATGTTTTGGGTTGCAGATGGAAC TAGAGGGTGATTTGAAGTAGGATTCTGTTTCTTTAAGTACAAAGGTACAA TTTCAAATGTCTCCTACATTTGTGAACAATTTTGTTTGTATTGCATGCAT GGTATGTTATGTTACAATGTAAGTCTCAAATTTTAAAATATTCTCTGTGT CTGATACAGCCAAGTATCCCCCCACCAGAGCCTCCGGGAAGACCATCTGC ACCCCCACCAGACCCTCCCAAACGGAAGGCTCCTCCACCGCCGCGTAGAG CTCCCACCACAACCTTGTCTGAAAACGTCACCCTCACTCCACCCAGCACC CCTCCTACCCAGCCAAAACGTACAGCCCCAAACTTGCAGATCAGACCTGG TTCCAGTCAGGAAGGCAGCAGTCCTGAAGACACCATGCAGCAAATGCCTC AGCCTCTCAACACATTCCAGCCACGCGCAGCGGCCCAGAATGCACCACAG ACTGCCCAACCTTCGGAGATATCCCACAATGCCTTGGCACAGAACGGTGC ACAGGGACCCGTGCTGATAGGACCCTCGGTGCCAAATTCACAAATAGTTC TGCCAGTAGCAAAACCACCCCCTGCACCTAAACCTAAGGACAAGAAGGGA GTGTTTGGGGGCCTTTTCAGCAAGAAGAAGAAATGAAAGAAAACAAAGTA CAGAAAAAGACTTTTCTGGCTGGGTATCCCTTGCCATGCAGCATGAGAAC AAAGATGTTTTGAGCGGTTATCAGTCTAAGGAACTGTAATGTCTGTACAT AACAGTGCAATAGCAGTAGAAGTTGTATTAGTTTCAAAAGTTATGGTGAG GAGCCACCATATGCATGGGTGGATACAAATTGCTTGTACCCATTTCATGC AGGTTGGATATCAGCATAGAAGTTGGTGTATATATGCTCACCTAAGGAGA TAGTAGACTGGGTATGGTGCCATTTAAGAGAAGAAAATGTACAGTAGTGT CACAGACTGACAGTTGAAGTCCTTATTCTGTAGTCTAGTTTGTATGTTAT CATGTAAGTGCCCCAAATACTGTAAAACAGAATGTCCTCACTGTAGCCAT TTATAAGCACTTGTAACAATTTTATGTCTTAATTGAAAAATACAGGTACA TTAGCATACCAGGCAACGGATATCTTGCCATGGATGGACATTTCACTTGT GCCAAGCACTTATTTTGTACATGACTCACACAAGTTGTAATTTTGTGTGT ACTAGCCATAGCTAAAAGTCACACAAATTCTCTTGCCTTAGTTTTAGATG ACTCCTTAATTGCTGTAAATGTATATTTTTCTCCGCACACTGTCACTGCT GAAGATACATCAGATTCAGTATTTCTACAAGACAGAAGCACATTTCAGCT GACCAGCTTGTGTGGCATTCACCAATACAGGCCAGAAAATGCTTCTTCAA CAATGAACATGTTTGTAATAAAAGATATTCTTTAAAAAGAAAAAAAAAGG CCATATAGAAAGCACAAGACCAGGCTTGTGGCTCCACTCAAAGTTGCCAC ACCAAATGCAATTATAGTAACACTCCATGCCTGAGGATAAGACCACTGCC ATTTTGGCATCACAGTTTTGTAGAGAAGGATTTAATTTTTGCCAATATTT ATATTTACCTCAATAATTCATATCATGTCAAATATTGTATATTTACTAAT TTATTGATATCAATCTTTTTTTTAATTTCTATAAAGAGTTCTATGCAAAA GTTTGAGTACTTGATTTAATTCTTAGTTGACATGTAAATTAATCCAGTTA AAGATACATACCGCAGTGTATATGCAGTAGGTGGATAGTGCATTTAAGGT ATTAGGTTTTAACCATATGTGCAAATAAATTAGGCTGCAAATATGATAAC CCAGTCTAGGTACCATGTAGCTTGTACTTACAAACACAGTAAGGTGTAGA AAAGGGTTTTTGTGGAATACCTGTACAGTATAAAGTCACTGACAGGGATA GTGCTTTGAGTGTACCATGTTGGGATGTCTACTTGCACTATGTTAGAACT ACATGTAAAATGTGCCCTAGTGAATTGTTAGCATTGTTAACTGTTGCCAC CTCAAACACGGAAGATTGTACAGAGTAACCACTTAAAAACTGTCTTTCCT TTATCTGTCCCTTTTACCCTGCATCTGTAGAAGACAGCAGCAGCACCTTC AGATAGTTTTCTAACATTGTTGTCTTCAACATCCTGTCCTTGAAGTTGAT GTTTCTGTATATAGTTCCGTTGTCGTGCCCCTCATCTCCTTCTCTAGTGC CTTATGATGTTCTTATCATGTCTAATTTAGACTTCTTTCCTGTTTGACTG GATTTGCCTGTGGAAATGTTATTGGCACTAAAAAGTTTTCCTGGGATCTG CTAGTTCCTCAAGAGCCAGGGGCTCCTACNCCTAGGGGCTCCCACCACTT TCTCCCCTTCCCTTCACCCTTAATCCATGATACATTCCCATTTAGGACCT GGCACACACCGTTCATGTATCCTACACATACATGTATGTTGTATTAAATT CTAGTGAATCCGTCTTGGAAGATTTTGTCACTTTCTTGTCTTTATTAAAA TATTATTACCACAAAGAAGATTACTAGACATATCAGAGGCACTAATTTAA AAGTTACCTGATCTTCAGCCATGACTACATGATAATGTAATGTAGTTTGG GGATAAGATCTGCTGGGAACACGTTTGATAGATTTATACTTTGTCCTTGT AGAATAGAGGCATGTTTAACCCTTCTAACGCCGTGGGCCTGTTTAACGGC CAATGGCAATTGACCCTGACGTTGGGAAGATTGTAGCTATGTTGTCAGGT AATCTAAATCTACCATAACAACAAACGAAATAAAATCCTCATAATCATTG TTGCACTAATTTTATTACACTTACATCTCTACATGTAAAACTAGTAAAAT ATATCCTTGGGTCTACTTTTGGCAAATTAAAAAAAAAGCTAGCTATAAAA TATTACAAGATTGTATTGATCTTACTTGAAGTGCTAAATGTGAAATATAC TACCGGTATAGTTAATAACAATTAGAAGACAGACAGGTAGATGTTATGAC AAGAAGTACAACAATGTGGCTCATGAACTT

Coding sequence (CDS) from alignment at Sc0000221:79118..82947+

>transcript:BL97414_cuf7 ID=transcript:BL97414_cuf7|Name=transcript:BL97414_cuf7|organism=Branchiostoma lanceolatum|type=CDS|length=1899bp|location=Sequence derived from alignment at Sc0000221:79118..82947+ (Branchiostoma lanceolatum)
ATGACAGCCTTGCCCAACACTGAGGCCCCCCCACTGCCAGACACAGAAAT
CCCACCACCACCCGACCTCCCCCCTCCCCCACCCCCTGTAGTACCACACC
ACCCCAGAAGTGGCAGCACCAGTAGTAGCGGAAACAGTAGTGATGGCGTA
AAGAGACCAAGTATCCCCCCACCAGAGCCTCCGGGAAGACCATCTGCACC
CCCACCAGACCCTCCCAAACGGAAGGCTCCTCCACCGCCGCGTAGAGCTC
CCACCACAACCTTGTCTGAAAACGTCACCCTCACTCCACCCAGCACCCCT
CCTACCCAGCCAAAACGTACAGCCCCAAACTTGCAGATCAGACCTGGTTC
CAGTCAGGAAGGCAGCAGTCCTGAAGACACCATGCAGCAAATGCCTCAGC
CTCTCAACACATTCCAGCCACGCGCAGCGGCCCAGAATGCACCACAGACT
GCCCAACCTTCGGAGATATCCCACAATGCCTTGGCACAGAACGGTGCACA
GGGACCCGTGCTGATAGGACCCTCGGTGCCAAATTCACAAATAGTTCTGC
CAGTAGCAAAACCACCCCCTGCACCTAAACCTAAGGACAAGAAGGGAGTG
TTTGGGGGCCTTTTCAGCAAGAAGAAGAAATGAATGACAGCCTTGCCCAA
CACTGAGGCCCCCCCACTGCCAGACACAGAAATCCCACCACCACCCGACC
TCCCCCCTCCCCCACCCCCTGTAGTACCACACCACCCCAGAAGTGGCAGC
ACCAGTAGTAGCGGAAACAGTAGTGATGGCGTAAAGAGACCAAGTATCCC
CCCACCAGAGCCTCCGGGAAGACCATCTGCACCCCCACCAGACCCTCCCA
AACGGAAGGCTCCTCCACCGCCGCGTAGAGCTCCCACCACAACCTTGTCT
GAAAACGTCACCCTCACTCCACCCAGCACCCCTCCTACCCAGCCAAAACG
TACAGCCCCAAACTTGCAGATCAGACCTGGTTCCAGTCAGGAAGGCAGCA
GTCCTGAAGACACCATGCAGCAAATGCCTCAGCCTCTCAACACATTCCAG
CCACGCGCAGCGGCCCAGAATGCACCACAGACTGCCCAACCTTCGGAGAT
ATCCCACAATGCCTTGGCACAGAACGGTGCACAGGGACCCGTGCTGATAG
GACCCTCGGTGCCAAATTCACAAATAGTTCTGCCAGTAGCAAAACCACCC
CCTGCACCTAAACCTAAGGACAAGAAGGGAGTGTTTGGGGGCCTTTTCAG
CAAGAAGAAGAAATGAATGACAGCCTTGCCCAACACTGAGGCCCCCCCAC
TGCCAGACACAGAAATCCCACCACCACCCGACCTCCCCCCTCCCCCACCC
CCTGTAGTACCACACCACCCCAGAAGTGGCAGCACCAGTAGTAGCGGAAA
CAGTAGTGATGGCGTAAAGAGACCAAGTATCCCCCCACCAGAGCCTCCGG
GAAGACCATCTGCACCCCCACCAGACCCTCCCAAACGGAAGGCTCCTCCA
CCGCCGCGTAGAGCTCCCACCACAACCTTGTCTGAAAACGTCACCCTCAC
TCCACCCAGCACCCCTCCTACCCAGCCAAAACGTACAGCCCCAAACTTGC
AGATCAGACCTGGTTCCAGTCAGGAAGGCAGCAGTCCTGAAGACACCATG
CAGCAAATGCCTCAGCCTCTCAACACATTCCAGCCACGCGCAGCGGCCCA
GAATGCACCACAGACTGCCCAACCTTCGGAGATATCCCACAATGCCTTGG
CACAGAACGGTGCACAGGGACCCGTGCTGATAGGACCCTCGGTGCCAAAT
TCACAAATAGTTCTGCCAGTAGCAAAACCACCCCCTGCACCTAAACCTAA
GGACAAGAAGGGAGTGTTTGGGGGCCTTTTCAGCAAGAAGAAGAAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97414gene:BL97414Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97414_cuf7transcript:BL97414_cuf7-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97414_cuf7-E1BL97414_cuf7-E1-1564476830-394789Branchiostoma lanceolatumexon
BL97414_cuf7-E2BL97414_cuf7-E2-1564476830-394791Branchiostoma lanceolatumexon
BL97414_cuf7-E3BL97414_cuf7-E3-1564476830-394794Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000221genomeSc0000221:79118..82947 +
Properties
Property NameValue
Transcript idBL97414_cuf7
Biotypeprotein_coding