|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97414_cuf7 >transcript:BL97414_cuf7-protein ID=transcript:BL97414_cuf7-protein|Name=transcript:BL97414_cuf7|organism=Branchiostoma lanceolatum|type=polypeptide|length=210bp
MTALPNTEAPPLPDTEIPPPPDLPPPPPPVVPHHPRSGSTSSSGNSSDGV
KRPSIPPPEPPGRPSAPPPDPPKRKAPPPPRRAPTTTLSENVTLTPPSTP
PTQPKRTAPNLQIRPGSSQEGSSPEDTMQQMPQPLNTFQPRAAAQNAPQT
AQPSEISHNALAQNGAQGPVLIGPSVPNSQIVLPVAKPPPAPKPKDKKGV
FGGLFSKKKK Run BLAST on NCBI mRNA from alignment at Sc0000221:79118..82947+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97414_cuf7 ID=transcript:BL97414_cuf7|Name=transcript:BL97414_cuf7|organism=Branchiostoma lanceolatum|type=mRNA|length=3830bp|location=Sequence derived from alignment at Sc0000221:79118..82947+ (Branchiostoma lanceolatum)
CTTACGTGACCGGGATTCTTCATGACAGGTGACTCATGTTTCAGATGGGG
AGACAGTTGGGATGCACAGCACCACCTGCATATCTAACTCTACTGTTCTG
CACTTCCCATAGGTTCAGGATTCTTGCATCTGGTGAAGCACAAAAGTTGG
TGTTTGCAGTGTTTGCACTTTATTCTGGTGACGATGATATCTTTAAAAAG
GTTTTGTAGTTTTCAGTTGTCTCCGGAGGAAATTTTGTTCAGCACAGTTG
ATTTTTACTTTTTTCTTGCACCCATTCAATTGGCACCTTTTTCTTTCTTC
CAGCCTTGCCCAACACTGAGGCCCCCCCACTGCCAGACACAGAAATCCCA
CCACCACCCGACCTCCCCCCTCCCCCACCCCCTGTAGTACCACACCACCC
CAGAAGTGGCAGCACCAGTAGTAGCGGAAACAGTAGTGATGGCGTAAAGA
GAGTAAGTGGACCTCAGTTTTATCCAATAAACTTCATTGAATTCATGTCA
GCAGATTTGTACCTTTGTGTTCCTTCTGCTACCCATTACCATGCCTCTGA
GTACCTGTCTAGTGTACCTACTACTGTATTTGGTCATTTGTGACGGTTAG
TGCAGTACAATGCTGTGGCAAACTTCAGAGAGTGAGACCTTCCTTATGAT
TTCACCATAAGATGACCAGTGGCCTTTGGAACCCATCATCCATTTGATAT
CTAGATGCATTTGCAGAGAAATTGGCCATGTTTTGGGTTGCAGATGGAAC
TAGAGGGTGATTTGAAGTAGGATTCTGTTTCTTTAAGTACAAAGGTACAA
TTTCAAATGTCTCCTACATTTGTGAACAATTTTGTTTGTATTGCATGCAT
GGTATGTTATGTTACAATGTAAGTCTCAAATTTTAAAATATTCTCTGTGT
CTGATACAGCCAAGTATCCCCCCACCAGAGCCTCCGGGAAGACCATCTGC
ACCCCCACCAGACCCTCCCAAACGGAAGGCTCCTCCACCGCCGCGTAGAG
CTCCCACCACAACCTTGTCTGAAAACGTCACCCTCACTCCACCCAGCACC
CCTCCTACCCAGCCAAAACGTACAGCCCCAAACTTGCAGATCAGACCTGG
TTCCAGTCAGGAAGGCAGCAGTCCTGAAGACACCATGCAGCAAATGCCTC
AGCCTCTCAACACATTCCAGCCACGCGCAGCGGCCCAGAATGCACCACAG
ACTGCCCAACCTTCGGAGATATCCCACAATGCCTTGGCACAGAACGGTGC
ACAGGGACCCGTGCTGATAGGACCCTCGGTGCCAAATTCACAAATAGTTC
TGCCAGTAGCAAAACCACCCCCTGCACCTAAACCTAAGGACAAGAAGGGA
GTGTTTGGGGGCCTTTTCAGCAAGAAGAAGAAATGAAAGAAAACAAAGTA
CAGAAAAAGACTTTTCTGGCTGGGTATCCCTTGCCATGCAGCATGAGAAC
AAAGATGTTTTGAGCGGTTATCAGTCTAAGGAACTGTAATGTCTGTACAT
AACAGTGCAATAGCAGTAGAAGTTGTATTAGTTTCAAAAGTTATGGTGAG
GAGCCACCATATGCATGGGTGGATACAAATTGCTTGTACCCATTTCATGC
AGGTTGGATATCAGCATAGAAGTTGGTGTATATATGCTCACCTAAGGAGA
TAGTAGACTGGGTATGGTGCCATTTAAGAGAAGAAAATGTACAGTAGTGT
CACAGACTGACAGTTGAAGTCCTTATTCTGTAGTCTAGTTTGTATGTTAT
CATGTAAGTGCCCCAAATACTGTAAAACAGAATGTCCTCACTGTAGCCAT
TTATAAGCACTTGTAACAATTTTATGTCTTAATTGAAAAATACAGGTACA
TTAGCATACCAGGCAACGGATATCTTGCCATGGATGGACATTTCACTTGT
GCCAAGCACTTATTTTGTACATGACTCACACAAGTTGTAATTTTGTGTGT
ACTAGCCATAGCTAAAAGTCACACAAATTCTCTTGCCTTAGTTTTAGATG
ACTCCTTAATTGCTGTAAATGTATATTTTTCTCCGCACACTGTCACTGCT
GAAGATACATCAGATTCAGTATTTCTACAAGACAGAAGCACATTTCAGCT
GACCAGCTTGTGTGGCATTCACCAATACAGGCCAGAAAATGCTTCTTCAA
CAATGAACATGTTTGTAATAAAAGATATTCTTTAAAAAGAAAAAAAAAGG
CCATATAGAAAGCACAAGACCAGGCTTGTGGCTCCACTCAAAGTTGCCAC
ACCAAATGCAATTATAGTAACACTCCATGCCTGAGGATAAGACCACTGCC
ATTTTGGCATCACAGTTTTGTAGAGAAGGATTTAATTTTTGCCAATATTT
ATATTTACCTCAATAATTCATATCATGTCAAATATTGTATATTTACTAAT
TTATTGATATCAATCTTTTTTTTAATTTCTATAAAGAGTTCTATGCAAAA
GTTTGAGTACTTGATTTAATTCTTAGTTGACATGTAAATTAATCCAGTTA
AAGATACATACCGCAGTGTATATGCAGTAGGTGGATAGTGCATTTAAGGT
ATTAGGTTTTAACCATATGTGCAAATAAATTAGGCTGCAAATATGATAAC
CCAGTCTAGGTACCATGTAGCTTGTACTTACAAACACAGTAAGGTGTAGA
AAAGGGTTTTTGTGGAATACCTGTACAGTATAAAGTCACTGACAGGGATA
GTGCTTTGAGTGTACCATGTTGGGATGTCTACTTGCACTATGTTAGAACT
ACATGTAAAATGTGCCCTAGTGAATTGTTAGCATTGTTAACTGTTGCCAC
CTCAAACACGGAAGATTGTACAGAGTAACCACTTAAAAACTGTCTTTCCT
TTATCTGTCCCTTTTACCCTGCATCTGTAGAAGACAGCAGCAGCACCTTC
AGATAGTTTTCTAACATTGTTGTCTTCAACATCCTGTCCTTGAAGTTGAT
GTTTCTGTATATAGTTCCGTTGTCGTGCCCCTCATCTCCTTCTCTAGTGC
CTTATGATGTTCTTATCATGTCTAATTTAGACTTCTTTCCTGTTTGACTG
GATTTGCCTGTGGAAATGTTATTGGCACTAAAAAGTTTTCCTGGGATCTG
CTAGTTCCTCAAGAGCCAGGGGCTCCTACNCCTAGGGGCTCCCACCACTT
TCTCCCCTTCCCTTCACCCTTAATCCATGATACATTCCCATTTAGGACCT
GGCACACACCGTTCATGTATCCTACACATACATGTATGTTGTATTAAATT
CTAGTGAATCCGTCTTGGAAGATTTTGTCACTTTCTTGTCTTTATTAAAA
TATTATTACCACAAAGAAGATTACTAGACATATCAGAGGCACTAATTTAA
AAGTTACCTGATCTTCAGCCATGACTACATGATAATGTAATGTAGTTTGG
GGATAAGATCTGCTGGGAACACGTTTGATAGATTTATACTTTGTCCTTGT
AGAATAGAGGCATGTTTAACCCTTCTAACGCCGTGGGCCTGTTTAACGGC
CAATGGCAATTGACCCTGACGTTGGGAAGATTGTAGCTATGTTGTCAGGT
AATCTAAATCTACCATAACAACAAACGAAATAAAATCCTCATAATCATTG
TTGCACTAATTTTATTACACTTACATCTCTACATGTAAAACTAGTAAAAT
ATATCCTTGGGTCTACTTTTGGCAAATTAAAAAAAAAGCTAGCTATAAAA
TATTACAAGATTGTATTGATCTTACTTGAAGTGCTAAATGTGAAATATAC
TACCGGTATAGTTAATAACAATTAGAAGACAGACAGGTAGATGTTATGAC
AAGAAGTACAACAATGTGGCTCATGAACTT Coding sequence (CDS) from alignment at Sc0000221:79118..82947+ >transcript:BL97414_cuf7 ID=transcript:BL97414_cuf7|Name=transcript:BL97414_cuf7|organism=Branchiostoma lanceolatum|type=CDS|length=1899bp|location=Sequence derived from alignment at Sc0000221:79118..82947+ (Branchiostoma lanceolatum)
ATGACAGCCTTGCCCAACACTGAGGCCCCCCCACTGCCAGACACAGAAAT
CCCACCACCACCCGACCTCCCCCCTCCCCCACCCCCTGTAGTACCACACC
ACCCCAGAAGTGGCAGCACCAGTAGTAGCGGAAACAGTAGTGATGGCGTA
AAGAGACCAAGTATCCCCCCACCAGAGCCTCCGGGAAGACCATCTGCACC
CCCACCAGACCCTCCCAAACGGAAGGCTCCTCCACCGCCGCGTAGAGCTC
CCACCACAACCTTGTCTGAAAACGTCACCCTCACTCCACCCAGCACCCCT
CCTACCCAGCCAAAACGTACAGCCCCAAACTTGCAGATCAGACCTGGTTC
CAGTCAGGAAGGCAGCAGTCCTGAAGACACCATGCAGCAAATGCCTCAGC
CTCTCAACACATTCCAGCCACGCGCAGCGGCCCAGAATGCACCACAGACT
GCCCAACCTTCGGAGATATCCCACAATGCCTTGGCACAGAACGGTGCACA
GGGACCCGTGCTGATAGGACCCTCGGTGCCAAATTCACAAATAGTTCTGC
CAGTAGCAAAACCACCCCCTGCACCTAAACCTAAGGACAAGAAGGGAGTG
TTTGGGGGCCTTTTCAGCAAGAAGAAGAAATGAATGACAGCCTTGCCCAA
CACTGAGGCCCCCCCACTGCCAGACACAGAAATCCCACCACCACCCGACC
TCCCCCCTCCCCCACCCCCTGTAGTACCACACCACCCCAGAAGTGGCAGC
ACCAGTAGTAGCGGAAACAGTAGTGATGGCGTAAAGAGACCAAGTATCCC
CCCACCAGAGCCTCCGGGAAGACCATCTGCACCCCCACCAGACCCTCCCA
AACGGAAGGCTCCTCCACCGCCGCGTAGAGCTCCCACCACAACCTTGTCT
GAAAACGTCACCCTCACTCCACCCAGCACCCCTCCTACCCAGCCAAAACG
TACAGCCCCAAACTTGCAGATCAGACCTGGTTCCAGTCAGGAAGGCAGCA
GTCCTGAAGACACCATGCAGCAAATGCCTCAGCCTCTCAACACATTCCAG
CCACGCGCAGCGGCCCAGAATGCACCACAGACTGCCCAACCTTCGGAGAT
ATCCCACAATGCCTTGGCACAGAACGGTGCACAGGGACCCGTGCTGATAG
GACCCTCGGTGCCAAATTCACAAATAGTTCTGCCAGTAGCAAAACCACCC
CCTGCACCTAAACCTAAGGACAAGAAGGGAGTGTTTGGGGGCCTTTTCAG
CAAGAAGAAGAAATGAATGACAGCCTTGCCCAACACTGAGGCCCCCCCAC
TGCCAGACACAGAAATCCCACCACCACCCGACCTCCCCCCTCCCCCACCC
CCTGTAGTACCACACCACCCCAGAAGTGGCAGCACCAGTAGTAGCGGAAA
CAGTAGTGATGGCGTAAAGAGACCAAGTATCCCCCCACCAGAGCCTCCGG
GAAGACCATCTGCACCCCCACCAGACCCTCCCAAACGGAAGGCTCCTCCA
CCGCCGCGTAGAGCTCCCACCACAACCTTGTCTGAAAACGTCACCCTCAC
TCCACCCAGCACCCCTCCTACCCAGCCAAAACGTACAGCCCCAAACTTGC
AGATCAGACCTGGTTCCAGTCAGGAAGGCAGCAGTCCTGAAGACACCATG
CAGCAAATGCCTCAGCCTCTCAACACATTCCAGCCACGCGCAGCGGCCCA
GAATGCACCACAGACTGCCCAACCTTCGGAGATATCCCACAATGCCTTGG
CACAGAACGGTGCACAGGGACCCGTGCTGATAGGACCCTCGGTGCCAAAT
TCACAAATAGTTCTGCCAGTAGCAAAACCACCCCCTGCACCTAAACCTAA
GGACAAGAAGGGAGTGTTTGGGGGCCTTTTCAGCAAGAAGAAGAAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000221 | genome | Sc0000221:79118..82947 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97414_cuf7 |
| Biotype | protein_coding |
|
