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transcript:BL97411_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97411_cuf0
Unique Nametranscript:BL97411_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97411_cuf0

>transcript:BL97411_cuf0-protein ID=transcript:BL97411_cuf0-protein|Name=transcript:BL97411_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=100bp
DGVPDGMCIDTDGKLWVAMFGKGQVLQVDPETGTHLRSVKIPTDQTTSCC
FGGPNLDILYVTTANVGLSAEAVQQKPQSGCLFQVTGLGVTGTPGMCYKG
Run BLAST on NCBI

mRNA from alignment at Sc0000181:423672..429738-

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97411_cuf0 ID=transcript:BL97411_cuf0|Name=transcript:BL97411_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=6067bp|location=Sequence derived from alignment at Sc0000181:423672..429738- (Branchiostoma lanceolatum)
GACGGCGTGCCTGATGGCATGTGCATCGACACTGATGGGAAACTGTGGGT AGCCATGTTTGGCAAAGGTCAGGTGCTGCAAGTGGACCCAGAGACAGGTT GGCAAAATACAATGATGATGATAATAGAGTCAATTCGAAGTCACCGAGAG AGTTGCTATTGCCGTCATGTACAAATACCTTCAATTCTTTGTAATTATTT GTTTAAAAGATTTGATACTTTTGAAATATTTTGAACATTATGTGAACTTA TCGATACTTATCTAAATATATAATTATTTTCCAGGTTGTGTTAAACTTTG GAAATATTCATAATGTTCTTTCTCCCCCTCTTGTTGCTTGGTCATCAAAA CTTTGCTATAAATTGTGATTTCAGTTTAGTCTTTCATGATTCGAAAACCT GTTCCAAATATCTAAATTTGCCACTTTTAAGTACATGAGTAGTTAGAAGT GTTTTGATGAGAAAAGAGAGTTTTGACATTGTCATTTCACTTCTCCAACA CCTCAGGCACACACCTCCGTTCGGTGAAGATCCCCACTGATCAGACCACG TCCTGCTGTTTCGGCGGCCCAAACCTGGACATCCTGTATGTAACAACCGC GAATGTTGGTCTGTCTGCTGAAGCGGTCCAGCAGAAGCCTCAGTCTGGCT GTCTGTTCCAGGTCACCGGGCTGGGCGCTACAGGCACACCTGGGCTGTGT TATAGTGGTTGAATACATTGTGGAAGGACTCTTCAACAGAGAATCGACCC TATGCTAGACATGAAGTTGCTTGCTAAAAATGCATGTCGCTCTTCAGAGA GTAGACTTGACTTATCATAGTTTTCACTAGAATCATCACCATTGTTCCCT AGATATATCACAATTGTTCACTAGAGCGATCACCATTGTCCCCTAGAATT ATCAAAATTGTTCACTAGAACTATCACAATTCTTAACTATAGGCTTATCA AAATTCTTAACTAGAGTTATCATGGTTGGTGCCAAATCGTTCACACATTG CTACTGCGTCGTCAAATTGTTTACCAAAGGTAACAATAGTCCAGCTAAAG AGGCAGCCGCCCAGTCTGTAAGTCGAGAAATTAAGTTTTGATTCCTTCCG AGTTTGCCAGCGGACACTCTAGCATGAGTGTCCATTATTGATATCAACTT GCTTTAAACAATAGAAAGAAAATAACGATATGTTATCAAAAGTGGTAGGC ATGAGTGTATTCATCAACTTGGTGAGTGTGATATTACTCTACCACACTAG TGTCACTTTGTACACCTCTGAAACAGGAGTAAAATACTTGTTGGCTGTGA TACCATATTTTGTCGCTTCAATTCCTGTTACAATATTCGTTGTGTCTATT TTGAAAATTTAGCCATCTTGTTCAAGGGTGGGTTACTCTGCCGAGGAGGT GCAGCAGGAACCTTTTACATATTACGCACAATTCCGGTCGCCGCGCATGC GTACTCGGAAGTGTGAAAGCGCTTATTGCACTCTGACACAAAAGAGATGT CCCCTAATCGAGGTACAGTATCACTGTAAGGTACTATTGCCTGATATCCG TACTAATGATCCCTCAACTTTTCGGGCATATCTTTGACTACAGGGTAAGG AGGAGGATGTTTGTTGACCATTGTCTCACGGTGAACGCATATCCGCCATG AGCCCGTCCTTTTAGTTTTCTGATTGGTCCTCGCGTGAGGAACGAATGGC CGTCTATGCTTCAAGGAACGCAGAGGGTTCCTTAAAATCCAAGGATTAAC AAAGAGACAGTTTAACGTCGGTATTTTGAGAATACACTATAGATGTACAT TAGATAAATAATCTTCTTGCGTAAGTCGTCTAACCCGTTTAGAATATGTG TCATGTCGCCTAGAATCCATTCATAGAATTCATTTTCCTTCTCTGTTAAG TGTACACTCGTCGTATACAAGTGCTTTGCTTTGCTTTATTTGCAATTAGT TTTTGGGTATAATTTGATAATAAAGGTATCATTATCACTGTTATTGTTAT TATTATCAGGCTATATGTAAATTATCAAAGTCAGCACTATTCTTTCTATG GACTCTGCACTTAATGTGGAACCGAATAGAACAGGTGTTTGGTGAGGGCA GCTGCTTGTGTATACATCGTACAAAGGTCAGGCCTTAGCGCAGAAAACAG TACAAATCAACATTCGTTGAACTTCGACACACTTGTATGTAGTCCATTTA ATTTATACAGTCCAAATCATGGCGGTGTCGGTGGCTGTGGACGAACCAGG CCTGTGTTTGGAGGGTCCCCACTGGGACGGTCGCACAGGAACACTGCTGT ATGTGGACATCAACGGACGGAAGGCCCATCGCTGGGATCCAGTCACAGGA CAGAAGGACACAGTTACGATGGGTGAGATTACAAAGCGTGTATTCCACGT GTACGTTTCTCATAGTCACACATTTAAGACCAAAAGGCAGTTTTGACAAC GACTCCGCGATCGCCGCATTGCTCAGATATGGACAATAGAACTTGGTGGT TTCATTGTTAATTTCTGTTACATTTTTACCACTGATTGAATGTATCTTCC ATGCAATGTTGCTATTGCAGACTGTATGGTAGGTGCCATCGTCCCGAGGG AATCTGGAGGGGTCGTAGTGGCCGCTGGAACCAGCTTTGCCTTCCTAGAT TTCAAGACCAGTCAACTGACCACTGTTGCACCGGTGGACCAACACAAACC CAGTAACCGGTTCAACGATGGGAAGTGCGATGCTGCCGGCAGGTTTTGGG CTGGTAAGGGTACAATGATAGGTTTATTGCAAATTCATGCCCGAAGGCTA AATGCAGATAACATACATAAATGAACAGGATACAAAATAGGTAAAAAAGC TGCTTATCTAAATTATACAAAGTTAACGTAATTGTCTATAACTAGTGAAG GGTTTGACTTCTCTTTTGTAAGCAATGGAAGACGTAATGTCCAACCCTTT CTATAATTTATGGGTTTTTGGTAGTTAAAAGAAGAATAGTATTTTCTTTG TCTGTAAGCTTTAAGCTGTAAGTGGTCTGGTACAATGAAAACTTACGAAT GTAGCTATTATGACTTATGTGTAGTTTGTGACTATTCCTAACATAATGCG TTGTAATATGGCTGGTATACTCGAACCACCGAATGAAGGCGACTGTATTT TCAGGCACGATGCCGGAGCTCGAGCCTCCCACCCCCGATCAAGTCGAACG CAAAGTCGGATCCTTGTACTGCCTTCACACCGATCACACTGTTACAAAGG TATGGTTAGCCTTGTCTCAGAGATTCTGATGACTGAGACATATTTTAGTG GTAGTGGCAATAAACTACATGTATAACAACGCGGCTACATCAGACTGTGT CGAAGAAAAGATATACATTGCACAATGTACATGTATATTGACATGCTTAG TTATTTCAATTGACATAGTCAGGGATACTAAACATGTTTGCTCCACGTTC GTCGAATAAAATTATTTTTATCACTAGTACTTTACCCTTCGCTATGTCCT TAAGGCATTCAATGAAACTGACATCTCTAACGGCCTGGCATGGACATCTG ACAACTCCACCATGTACTACATCGACTCACTCCAGTACAGCGTGGATGCC TTCGACTTTGACCTGCCCACTGGAACTCTGAGTATGTACAGTTGATAACT CCCAGAGGCCCCATTGTATTATATAGGGCCATGTTGGGTTAATTATATGG ATGGCATCCTCTGGGGACCCCGAAACTGGTGCGAGCGTGCGAATGAAAAA AAAGTTTGGCAAAAAAAAGAGGAATACGTCAGTTTTGAGACTGTACGAGT TGGATAACGATTTTTGTTCCTTCGGGTTGAATTCGCGTCNTTTTGTTCCT TCGGCTTGAATTCGCGTCTGAATATTGTTACCGCTAACTGCTGTGCGTCG GCTGCAGTATGATGACCTACGCTGGGCGTTAAATAAAAGTGACTTTTAAG AGAGAACATACTTTGTAGATTGTACCCTGAAATCAAACATATTCAAATGT TGTACCTTGCTTGTGCACCCTACAATAAATTTTGAAGCGTCGAAGGTTCT CACTTTGGGGTCCTATAGGCGAAATACTGTGGTCTGGCCTAGCTGTCAGT CAAACATGGGGAATTTTCATTGCCATCATCTTTAAAGCACGACACAGTTG CAAGCGACATGTTGATGATATCTACGGTGTTGATAAACAATCAATTTTCT GGCCGTGGTTTTATTCACGATGTATTTTTTATTCTTCAGCAAACCGTCGT AAAGTGGTGAATTTTGACCAGAGCACAGACGGCGTGCCTGATGGCATGTG TATCGACACTGATGGGAAACTGTGGGTAGCCATGTTTGGCAAAGGTCAGG TGCTGCAAGTGGACCCAGAGACAGGTTGGCAAAATATAATGATGATGACA ATAATGATGACAATTCATCAATGTGGACTACCAACTGCTTACTTTTTCTC CATCTTGTTGTTGCATGCTTGCACATCGGCAACATTTCTCTGGTTGTAAA TTCGGCTCTCTCTTTCAAGCTTAGAAAACCTGTTCCAAATATCTAAACAT GTAAAACATGCCACATTTGAGCACATGAGTTGTAAGGATGCTCTCCAAGC AGAGGTTCGGCACTGCTGATTTTTGACGTGAACTTATGCTTGGGGGGGGG GGCTTTTCTATTTTGCCCAGTATTCTTTATGTTGCCAAGCCAAGTTGTAT ACTATCATGAAAAAGAGATTTTTGACATTATCATTTCACTTGTCCAACAT CTCAGGCACACACCTCCGTTCGGTGAAAATCCCCGCTGATCAGACCACGT CCTGCTGTTTCGCCGGCCCAAACTTGGACATCCTGTATGTAACAACCGCG AATGTTGGTCTGTCTGCTGAGGCGGTCCAGCAGAAGCCTCAGTCTGGCTG TCTGTTCCAGGTGACCGGGCTGGGCGTTACAGGCACACCTGGGATGTGCT ACAAAGGTTGATCCCATGGTGGCAGACCACTTGAACAAAGAATCAAAAAA TGATAGCAATTGTTGCTTTTTACTCCTCTGTACCAGACTCAGTTGCCTGC TGAACTGAAATAGAGGAATTTGGCCAAATGTATTGAGTGATGTTACAGAT GAGTTAGCCAGCCATAGAGTTACACAGTTGCGAGCACAGCTGTAAGCTGG TCTGGTAGAGAGACATCTAAGTCCATAGAGTTCTTAATGGTTGAGTCAAG TATTATGAATGTGTACTAGATTTACAATTGTGTACTAGATTTATCTCAAT TGTGTACTAGATTTATCTCAATTGTTTATTAGAATTATCACAATTATTTA CTAGAATTATATCAATTGTTTGCTAGAATTATCTCAGTTGTTTACTAGAA TGATCACAATTGCTTACTTGAATTATCACAATTGTTTACTAGAATTATCT CAATTGTTAACTAGAGTTATCATAGCTGCTGCCAAATTGTTCTGTTCACA TGTTGCTGTTGTGTCGCCAAGTTCTCACCAAAGAAAGCAATAGTCTAGCT AAAGAGGCAACATACGGCCCAGTCTGTAAGCCGCGAAAATAAGTTTTGAT TCCTTCATAGTTTGAACACATGAGTGGTCGTTATCTTTGTAACCCAACTG CGAAGTTTGAAAATGTGTGCTGATGTATCAAAACTGCTATCAACATAGTT CTAAACAATGGAAAGAAAATAACGATACGGTATTAAAGCAGCAAAAGGAA ATATATCTACATGTCATGAAAGATAGAACCAGCAGTAACGTAGCCTTGCT CGCACTCCACCATTTTGTGTCATCAGCGCGCTCATTAATTTTCGCCTGAT TAAAAAAAAATCTCCCGGAGATGGTCAACATGACGAGAGAGTACCCACAT GGGAAAATATGTTGTGTTGTAGCTTTGACTGTACCTGTAGAATTGACACT TGTGAGGTACCCATGACTGTAATTGTAGAAATGAAACCAGTTCGATAGTT CAGTAAAAGTGGCACAAAGAGTGTAATCGCACTTTGGTGAGTGATATCAG TCTAACCACACTAGTGTCACTTTGTGCACTTCTTGAATACAGGAATAAAA GACTTGTTGGCTGTGAC

Coding sequence (CDS) from alignment at Sc0000181:423672..429738-

>transcript:BL97411_cuf0 ID=transcript:BL97411_cuf0|Name=transcript:BL97411_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=909bp|location=Sequence derived from alignment at Sc0000181:423672..429738- (Branchiostoma lanceolatum)
GACGGCGTGCCTGATGGCATGTGCATCGACACTGATGGGAAACTGTGGGT
AGCCATGTTTGGCAAAGGTCAGGTGCTGCAAGTGGACCCAGAGACAGGCA
CACACCTCCGTTCGGTGAAGATCCCCACTGATCAGACCACGTCCTGCTGT
TTCGGCGGCCCAAACCTGGACATCCTGTATGTAACAACCGCGAATGTTGG
TCTGTCTGCTGAGGCGGTCCAGCAGAAGCCTCAGTCTGGCTGTCTGTTCC
AGGTGACCGGGCTGGGCGTTACAGGCACACCTGGGATGTGCTACAAAGGT
TGAGACGGCGTGCCTGATGGCATGTGCATCGACACTGATGGGAAACTGTG
GGTAGCCATGTTTGGCAAAGGTCAGGTGCTGCAAGTGGACCCAGAGACAG
GCACACACCTCCGTTCGGTGAAGATCCCCACTGATCAGACCACGTCCTGC
TGTTTCGGCGGCCCAAACCTGGACATCCTGTATGTAACAACCGCGAATGT
TGGTCTGTCTGCTGAGGCGGTCCAGCAGAAGCCTCAGTCTGGCTGTCTGT
TCCAGGTGACCGGGCTGGGCGTTACAGGCACACCTGGGATGTGCTACAAA
GGTTGAGACGGCGTGCCTGATGGCATGTGCATCGACACTGATGGGAAACT
GTGGGTAGCCATGTTTGGCAAAGGTCAGGTGCTGCAAGTGGACCCAGAGA
CAGGCACACACCTCCGTTCGGTGAAGATCCCCACTGATCAGACCACGTCC
TGCTGTTTCGGCGGCCCAAACCTGGACATCCTGTATGTAACAACCGCGAA
TGTTGGTCTGTCTGCTGAGGCGGTCCAGCAGAAGCCTCAGTCTGGCTGTC
TGTTCCAGGTGACCGGGCTGGGCGTTACAGGCACACCTGGGATGTGCTAC
AAAGGTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97411gene:BL97411Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97411_cuf0-E1BL97411_cuf0-E1-1564476830-371939Branchiostoma lanceolatumexon
BL97411_cuf0-E2BL97411_cuf0-E2-1564476830-371937Branchiostoma lanceolatumexon
BL97411_cuf0-E3BL97411_cuf0-E3-1564476830-371935Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97411_cuf0transcript:BL97411_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000181genomeSc0000181:423672..429738 -
Properties
Property NameValue
Transcript idBL97411_cuf0
Biotypeprotein_coding