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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97411_cuf0 >transcript:BL97411_cuf0-protein ID=transcript:BL97411_cuf0-protein|Name=transcript:BL97411_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=100bp
DGVPDGMCIDTDGKLWVAMFGKGQVLQVDPETGTHLRSVKIPTDQTTSCC
FGGPNLDILYVTTANVGLSAEAVQQKPQSGCLFQVTGLGVTGTPGMCYKG Run BLAST on NCBI mRNA from alignment at Sc0000181:423672..429738- Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97411_cuf0 ID=transcript:BL97411_cuf0|Name=transcript:BL97411_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=6067bp|location=Sequence derived from alignment at Sc0000181:423672..429738- (Branchiostoma lanceolatum)
GACGGCGTGCCTGATGGCATGTGCATCGACACTGATGGGAAACTGTGGGT
AGCCATGTTTGGCAAAGGTCAGGTGCTGCAAGTGGACCCAGAGACAGGTT
GGCAAAATACAATGATGATGATAATAGAGTCAATTCGAAGTCACCGAGAG
AGTTGCTATTGCCGTCATGTACAAATACCTTCAATTCTTTGTAATTATTT
GTTTAAAAGATTTGATACTTTTGAAATATTTTGAACATTATGTGAACTTA
TCGATACTTATCTAAATATATAATTATTTTCCAGGTTGTGTTAAACTTTG
GAAATATTCATAATGTTCTTTCTCCCCCTCTTGTTGCTTGGTCATCAAAA
CTTTGCTATAAATTGTGATTTCAGTTTAGTCTTTCATGATTCGAAAACCT
GTTCCAAATATCTAAATTTGCCACTTTTAAGTACATGAGTAGTTAGAAGT
GTTTTGATGAGAAAAGAGAGTTTTGACATTGTCATTTCACTTCTCCAACA
CCTCAGGCACACACCTCCGTTCGGTGAAGATCCCCACTGATCAGACCACG
TCCTGCTGTTTCGGCGGCCCAAACCTGGACATCCTGTATGTAACAACCGC
GAATGTTGGTCTGTCTGCTGAAGCGGTCCAGCAGAAGCCTCAGTCTGGCT
GTCTGTTCCAGGTCACCGGGCTGGGCGCTACAGGCACACCTGGGCTGTGT
TATAGTGGTTGAATACATTGTGGAAGGACTCTTCAACAGAGAATCGACCC
TATGCTAGACATGAAGTTGCTTGCTAAAAATGCATGTCGCTCTTCAGAGA
GTAGACTTGACTTATCATAGTTTTCACTAGAATCATCACCATTGTTCCCT
AGATATATCACAATTGTTCACTAGAGCGATCACCATTGTCCCCTAGAATT
ATCAAAATTGTTCACTAGAACTATCACAATTCTTAACTATAGGCTTATCA
AAATTCTTAACTAGAGTTATCATGGTTGGTGCCAAATCGTTCACACATTG
CTACTGCGTCGTCAAATTGTTTACCAAAGGTAACAATAGTCCAGCTAAAG
AGGCAGCCGCCCAGTCTGTAAGTCGAGAAATTAAGTTTTGATTCCTTCCG
AGTTTGCCAGCGGACACTCTAGCATGAGTGTCCATTATTGATATCAACTT
GCTTTAAACAATAGAAAGAAAATAACGATATGTTATCAAAAGTGGTAGGC
ATGAGTGTATTCATCAACTTGGTGAGTGTGATATTACTCTACCACACTAG
TGTCACTTTGTACACCTCTGAAACAGGAGTAAAATACTTGTTGGCTGTGA
TACCATATTTTGTCGCTTCAATTCCTGTTACAATATTCGTTGTGTCTATT
TTGAAAATTTAGCCATCTTGTTCAAGGGTGGGTTACTCTGCCGAGGAGGT
GCAGCAGGAACCTTTTACATATTACGCACAATTCCGGTCGCCGCGCATGC
GTACTCGGAAGTGTGAAAGCGCTTATTGCACTCTGACACAAAAGAGATGT
CCCCTAATCGAGGTACAGTATCACTGTAAGGTACTATTGCCTGATATCCG
TACTAATGATCCCTCAACTTTTCGGGCATATCTTTGACTACAGGGTAAGG
AGGAGGATGTTTGTTGACCATTGTCTCACGGTGAACGCATATCCGCCATG
AGCCCGTCCTTTTAGTTTTCTGATTGGTCCTCGCGTGAGGAACGAATGGC
CGTCTATGCTTCAAGGAACGCAGAGGGTTCCTTAAAATCCAAGGATTAAC
AAAGAGACAGTTTAACGTCGGTATTTTGAGAATACACTATAGATGTACAT
TAGATAAATAATCTTCTTGCGTAAGTCGTCTAACCCGTTTAGAATATGTG
TCATGTCGCCTAGAATCCATTCATAGAATTCATTTTCCTTCTCTGTTAAG
TGTACACTCGTCGTATACAAGTGCTTTGCTTTGCTTTATTTGCAATTAGT
TTTTGGGTATAATTTGATAATAAAGGTATCATTATCACTGTTATTGTTAT
TATTATCAGGCTATATGTAAATTATCAAAGTCAGCACTATTCTTTCTATG
GACTCTGCACTTAATGTGGAACCGAATAGAACAGGTGTTTGGTGAGGGCA
GCTGCTTGTGTATACATCGTACAAAGGTCAGGCCTTAGCGCAGAAAACAG
TACAAATCAACATTCGTTGAACTTCGACACACTTGTATGTAGTCCATTTA
ATTTATACAGTCCAAATCATGGCGGTGTCGGTGGCTGTGGACGAACCAGG
CCTGTGTTTGGAGGGTCCCCACTGGGACGGTCGCACAGGAACACTGCTGT
ATGTGGACATCAACGGACGGAAGGCCCATCGCTGGGATCCAGTCACAGGA
CAGAAGGACACAGTTACGATGGGTGAGATTACAAAGCGTGTATTCCACGT
GTACGTTTCTCATAGTCACACATTTAAGACCAAAAGGCAGTTTTGACAAC
GACTCCGCGATCGCCGCATTGCTCAGATATGGACAATAGAACTTGGTGGT
TTCATTGTTAATTTCTGTTACATTTTTACCACTGATTGAATGTATCTTCC
ATGCAATGTTGCTATTGCAGACTGTATGGTAGGTGCCATCGTCCCGAGGG
AATCTGGAGGGGTCGTAGTGGCCGCTGGAACCAGCTTTGCCTTCCTAGAT
TTCAAGACCAGTCAACTGACCACTGTTGCACCGGTGGACCAACACAAACC
CAGTAACCGGTTCAACGATGGGAAGTGCGATGCTGCCGGCAGGTTTTGGG
CTGGTAAGGGTACAATGATAGGTTTATTGCAAATTCATGCCCGAAGGCTA
AATGCAGATAACATACATAAATGAACAGGATACAAAATAGGTAAAAAAGC
TGCTTATCTAAATTATACAAAGTTAACGTAATTGTCTATAACTAGTGAAG
GGTTTGACTTCTCTTTTGTAAGCAATGGAAGACGTAATGTCCAACCCTTT
CTATAATTTATGGGTTTTTGGTAGTTAAAAGAAGAATAGTATTTTCTTTG
TCTGTAAGCTTTAAGCTGTAAGTGGTCTGGTACAATGAAAACTTACGAAT
GTAGCTATTATGACTTATGTGTAGTTTGTGACTATTCCTAACATAATGCG
TTGTAATATGGCTGGTATACTCGAACCACCGAATGAAGGCGACTGTATTT
TCAGGCACGATGCCGGAGCTCGAGCCTCCCACCCCCGATCAAGTCGAACG
CAAAGTCGGATCCTTGTACTGCCTTCACACCGATCACACTGTTACAAAGG
TATGGTTAGCCTTGTCTCAGAGATTCTGATGACTGAGACATATTTTAGTG
GTAGTGGCAATAAACTACATGTATAACAACGCGGCTACATCAGACTGTGT
CGAAGAAAAGATATACATTGCACAATGTACATGTATATTGACATGCTTAG
TTATTTCAATTGACATAGTCAGGGATACTAAACATGTTTGCTCCACGTTC
GTCGAATAAAATTATTTTTATCACTAGTACTTTACCCTTCGCTATGTCCT
TAAGGCATTCAATGAAACTGACATCTCTAACGGCCTGGCATGGACATCTG
ACAACTCCACCATGTACTACATCGACTCACTCCAGTACAGCGTGGATGCC
TTCGACTTTGACCTGCCCACTGGAACTCTGAGTATGTACAGTTGATAACT
CCCAGAGGCCCCATTGTATTATATAGGGCCATGTTGGGTTAATTATATGG
ATGGCATCCTCTGGGGACCCCGAAACTGGTGCGAGCGTGCGAATGAAAAA
AAAGTTTGGCAAAAAAAAGAGGAATACGTCAGTTTTGAGACTGTACGAGT
TGGATAACGATTTTTGTTCCTTCGGGTTGAATTCGCGTCNTTTTGTTCCT
TCGGCTTGAATTCGCGTCTGAATATTGTTACCGCTAACTGCTGTGCGTCG
GCTGCAGTATGATGACCTACGCTGGGCGTTAAATAAAAGTGACTTTTAAG
AGAGAACATACTTTGTAGATTGTACCCTGAAATCAAACATATTCAAATGT
TGTACCTTGCTTGTGCACCCTACAATAAATTTTGAAGCGTCGAAGGTTCT
CACTTTGGGGTCCTATAGGCGAAATACTGTGGTCTGGCCTAGCTGTCAGT
CAAACATGGGGAATTTTCATTGCCATCATCTTTAAAGCACGACACAGTTG
CAAGCGACATGTTGATGATATCTACGGTGTTGATAAACAATCAATTTTCT
GGCCGTGGTTTTATTCACGATGTATTTTTTATTCTTCAGCAAACCGTCGT
AAAGTGGTGAATTTTGACCAGAGCACAGACGGCGTGCCTGATGGCATGTG
TATCGACACTGATGGGAAACTGTGGGTAGCCATGTTTGGCAAAGGTCAGG
TGCTGCAAGTGGACCCAGAGACAGGTTGGCAAAATATAATGATGATGACA
ATAATGATGACAATTCATCAATGTGGACTACCAACTGCTTACTTTTTCTC
CATCTTGTTGTTGCATGCTTGCACATCGGCAACATTTCTCTGGTTGTAAA
TTCGGCTCTCTCTTTCAAGCTTAGAAAACCTGTTCCAAATATCTAAACAT
GTAAAACATGCCACATTTGAGCACATGAGTTGTAAGGATGCTCTCCAAGC
AGAGGTTCGGCACTGCTGATTTTTGACGTGAACTTATGCTTGGGGGGGGG
GGCTTTTCTATTTTGCCCAGTATTCTTTATGTTGCCAAGCCAAGTTGTAT
ACTATCATGAAAAAGAGATTTTTGACATTATCATTTCACTTGTCCAACAT
CTCAGGCACACACCTCCGTTCGGTGAAAATCCCCGCTGATCAGACCACGT
CCTGCTGTTTCGCCGGCCCAAACTTGGACATCCTGTATGTAACAACCGCG
AATGTTGGTCTGTCTGCTGAGGCGGTCCAGCAGAAGCCTCAGTCTGGCTG
TCTGTTCCAGGTGACCGGGCTGGGCGTTACAGGCACACCTGGGATGTGCT
ACAAAGGTTGATCCCATGGTGGCAGACCACTTGAACAAAGAATCAAAAAA
TGATAGCAATTGTTGCTTTTTACTCCTCTGTACCAGACTCAGTTGCCTGC
TGAACTGAAATAGAGGAATTTGGCCAAATGTATTGAGTGATGTTACAGAT
GAGTTAGCCAGCCATAGAGTTACACAGTTGCGAGCACAGCTGTAAGCTGG
TCTGGTAGAGAGACATCTAAGTCCATAGAGTTCTTAATGGTTGAGTCAAG
TATTATGAATGTGTACTAGATTTACAATTGTGTACTAGATTTATCTCAAT
TGTGTACTAGATTTATCTCAATTGTTTATTAGAATTATCACAATTATTTA
CTAGAATTATATCAATTGTTTGCTAGAATTATCTCAGTTGTTTACTAGAA
TGATCACAATTGCTTACTTGAATTATCACAATTGTTTACTAGAATTATCT
CAATTGTTAACTAGAGTTATCATAGCTGCTGCCAAATTGTTCTGTTCACA
TGTTGCTGTTGTGTCGCCAAGTTCTCACCAAAGAAAGCAATAGTCTAGCT
AAAGAGGCAACATACGGCCCAGTCTGTAAGCCGCGAAAATAAGTTTTGAT
TCCTTCATAGTTTGAACACATGAGTGGTCGTTATCTTTGTAACCCAACTG
CGAAGTTTGAAAATGTGTGCTGATGTATCAAAACTGCTATCAACATAGTT
CTAAACAATGGAAAGAAAATAACGATACGGTATTAAAGCAGCAAAAGGAA
ATATATCTACATGTCATGAAAGATAGAACCAGCAGTAACGTAGCCTTGCT
CGCACTCCACCATTTTGTGTCATCAGCGCGCTCATTAATTTTCGCCTGAT
TAAAAAAAAATCTCCCGGAGATGGTCAACATGACGAGAGAGTACCCACAT
GGGAAAATATGTTGTGTTGTAGCTTTGACTGTACCTGTAGAATTGACACT
TGTGAGGTACCCATGACTGTAATTGTAGAAATGAAACCAGTTCGATAGTT
CAGTAAAAGTGGCACAAAGAGTGTAATCGCACTTTGGTGAGTGATATCAG
TCTAACCACACTAGTGTCACTTTGTGCACTTCTTGAATACAGGAATAAAA
GACTTGTTGGCTGTGAC Coding sequence (CDS) from alignment at Sc0000181:423672..429738- >transcript:BL97411_cuf0 ID=transcript:BL97411_cuf0|Name=transcript:BL97411_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=909bp|location=Sequence derived from alignment at Sc0000181:423672..429738- (Branchiostoma lanceolatum)
GACGGCGTGCCTGATGGCATGTGCATCGACACTGATGGGAAACTGTGGGT
AGCCATGTTTGGCAAAGGTCAGGTGCTGCAAGTGGACCCAGAGACAGGCA
CACACCTCCGTTCGGTGAAGATCCCCACTGATCAGACCACGTCCTGCTGT
TTCGGCGGCCCAAACCTGGACATCCTGTATGTAACAACCGCGAATGTTGG
TCTGTCTGCTGAGGCGGTCCAGCAGAAGCCTCAGTCTGGCTGTCTGTTCC
AGGTGACCGGGCTGGGCGTTACAGGCACACCTGGGATGTGCTACAAAGGT
TGAGACGGCGTGCCTGATGGCATGTGCATCGACACTGATGGGAAACTGTG
GGTAGCCATGTTTGGCAAAGGTCAGGTGCTGCAAGTGGACCCAGAGACAG
GCACACACCTCCGTTCGGTGAAGATCCCCACTGATCAGACCACGTCCTGC
TGTTTCGGCGGCCCAAACCTGGACATCCTGTATGTAACAACCGCGAATGT
TGGTCTGTCTGCTGAGGCGGTCCAGCAGAAGCCTCAGTCTGGCTGTCTGT
TCCAGGTGACCGGGCTGGGCGTTACAGGCACACCTGGGATGTGCTACAAA
GGTTGAGACGGCGTGCCTGATGGCATGTGCATCGACACTGATGGGAAACT
GTGGGTAGCCATGTTTGGCAAAGGTCAGGTGCTGCAAGTGGACCCAGAGA
CAGGCACACACCTCCGTTCGGTGAAGATCCCCACTGATCAGACCACGTCC
TGCTGTTTCGGCGGCCCAAACCTGGACATCCTGTATGTAACAACCGCGAA
TGTTGGTCTGTCTGCTGAGGCGGTCCAGCAGAAGCCTCAGTCTGGCTGTC
TGTTCCAGGTGACCGGGCTGGGCGTTACAGGCACACCTGGGATGTGCTAC
AAAGGTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000181 | genome | Sc0000181:423672..429738 - |
Properties
| Property Name | Value |
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| Transcript id | BL97411_cuf0 |
| Biotype | protein_coding |
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