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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97410_cuf3 >transcript:BL97410_cuf3-protein ID=transcript:BL97410_cuf3-protein|Name=transcript:BL97410_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=274bp
TGDGMFFQWVFCSAVWCVGLVVNVIQGFPKFYAISMIGGALWCTGNAVVV
PILKTIGLGMGMLFWASTNLLMGWFSGRFGWFGMRPDRLTRPALDYAGVA
LGIVRTIILSFVKSDVMDKPETDHEPLLEEDRIRGVVNSPRERVPSSEPD
DYSWVDKLSPGKKRITGITLAMFSGCMYGLNFVPVIYAQQHYEGATDNGL
DYVFAHFSGIYATSTLYFILYCMYTRNKPAVFPRAILPALLSGTMRAVAQ
AAWFVANQRLQESVSFPIITTGPS Run BLAST on NCBI mRNA from alignment at Sc0000018:3791474..3794383+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97410_cuf3 ID=transcript:BL97410_cuf3|Name=transcript:BL97410_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=2910bp|location=Sequence derived from alignment at Sc0000018:3791474..3794383+ (Branchiostoma lanceolatum)
ACGGGAGATGGTAAGACTGCCAGAAATAACATCACCGGTGCCTCTGTCTT
TAACCCTCCAAGTAGAGGTTCGGCAAAAGCTTGTTTTTGACGTCTTTTTA
GGCGTTTGCATAGGGCTTTCTATTTTGTCAGGTTTTCATTCTGTCAGCAA
GTGAGTAGGTTTATAGGGCATTGATTCTTGCGTCTTTGGGGAGAGGTTTG
GCTGGTTGACAAAAAGAAAACCTGACAAAACAGAAATCTCCATAGAAACT
AATAAAAAGATCTATAAGTCAGAGCGGAACCTCTGCTTGAAGGGTACTTG
GTACCTCTATGTCATTCGAAAGTACTTCTTTCTTTCAAATTAAGTTATCA
GAGGCGTTTCTTCAATTAGAACCCGTGCTTTTTTGCTGATACCTTTCTTT
CCCCGAATGCAGGCATGTTCTTCCAGTGGGTGTTCTGCTCTGCGGTATGG
TGTGTTGGTCTGGTGGTGAACGTTATTCAGGGCTTCCCCAAGTTCTACGC
CATCTCAATGATTGGAGGAGCTCTGTGGTGTACAGGTATACCATAGGGAT
TAATGCATTTGTTCTCGTTTAAGTTGCTTCTTACTATTGAAAAATATACA
GCACACCGATATTCATCATGGCTGATATGCTGAAGAAATACACAGATGCT
CTTTTGCAACGGTTGTTTTAGTGGTGACTTACCAGTGCTATTTGTGTCCA
GGCAACGCAGTCGTTGTGCCAATCCTGAAGACAATAGGGCTGGGGATGGG
CATGCTGTTCTGGGCTTCTACCAACCTCCTGATGGGCTGGTTCAGTGGAA
GGTTCGGCTGGTTCGGGATGCGGCCGGACAGGTTAACCAGGCCTGCCTTA
GACTATGCCGGGGTGGCCCTGGGCATTGTCAGGTAAGAAAAATGACTTAG
TTACAACACGTTACAATCAACTACGTTGCCATTTGAATTATATGTCTTTT
GTATGTGTAACTGCCACGAAACCCACATTTTTCCTGTTGNTTCAGCGGGA
GGTTCGGCTGGTTCGGGATGCGGCCGGACAGGTTAACCAGGCCTGCCTTA
GACTATGCCGGGGTGGCCCTGGGCATTGTCAGGTAAGAAAAATGACTTAG
TTACAACACGTTACAATCAACTACGTTGCCATTTGAATTATATGTCTTTT
GTATGTGTAACTGCCACGAAACCCACATTTTTCCTGTTGATCGAACATTC
AATTCGAAGCCCCTTTTCTACACATCATTATAGATATATAGCCAAACTTG
TCATGAAGGTAGATGGAGAAAACACGTGCTGTAATCACTTCTTTTTACCT
GTCTTTTAGGACGATAATACTGTCCTTTGTGAAAAGTGACGTCATGGACA
AGCCTGAAACTGATCACGAGCCATTGCTGGAAGAAGACAGAATACGTGTA
ATTCCATTACTATCATCGTATTTGACCAAAGAAAGAGAGAGTTAGTAAAT
ACACCCGAACAAGTAGATAGATTGTGTTAATGAAACGTTTAAGAGAATTT
CCCGGCACACTGCACCACAAGTGGTCGAACATCATTTGCCAATGGCATTT
GTTGAAATGTATAATTTTACTATGCAGTAGGGAATGTTCTTGTAGACGTT
TGTCGTAATATGTGTGACATAACATATACTTGACCTGAAATGTAAAAACC
TGTTATGTCTGTAATTGAACAGGGTGTCGTCAACAGTCCACGTGAGAGGG
TTCCCTCATCAGAACCTGATGACTACTCCTGGGTGGATAAACTTTCTCCT
GGGAAAAAGAGAATCACGTAAGTGTAGCTGACTTAAAATTGAAAGTACTT
AAATGGGAATTTATGGTTATGTTCAGATGTCTCTCTTCCACAATAATGAA
TTGTGGATTTTCATCGTATCGCAGCAAGTCTGTATTTTGTGTTGGTAAAT
GAAAGCTGTGGAATGAACATATTGATATCAACCATCGTACACTGCGCCTA
TCCCCACTCTTACTGAACCCCATACGTTGATCTGAAGTGTATTTAGGACC
TTGTGTTATCTTTTCCCGCAGGGGAATCACACTGGCGATGTTTTCTGGCT
GCATGTACGGTCTTAATTTTGTACCGGTTATTTACGCACAGCAACACTAC
GAAGGAGCCACAGACAATGGTAACGTTTACTATTTTCAACTTAAAACAAA
TAATACTGTTATAACTTGTAAAGACTTTATAGAAGGATTCTACAACATCT
TAGATTACTATATTTTTGATTGAATAAATCAATATGTAAACATACTCTAC
ACATGGCATTATGAAACAAATGTCCGATTTATGTGTACGGTTTTTCTTAA
GTCAGTCGTGTCTTCTGTGTTTTATTTCAGGTCTAGATTATGTTTTCGCT
CACTTCAGTGGTATCTACGCGACATCTACGCTATACTTCATACTATACTG
CATGTACACGAGAAACAAGCCTGCGGTTTTCCCGCGAGCCATTCTACCGG
CCCTACTGTCGGGGACCATGAGGGCCGTAGCTCAGGCTGCCTGGTTCGTG
GCCAATCAGAGGCTGCAGGAGAGCGTCAGTTTCCCCATCATCACTACGGT
AACTTGCCGCTGCTTTTGTATGAAACTTCAGGCTCAAGATACGGGTTACA
TGTTGAGTCAGGGATTTAATTGAGTCAGGGACTTAACTATGTATTAACAG
AACTTTGAATTTTGAATAAAATAAACTCTTCTTCGTCCTCACAGTGGACA
AGGGGAACGTATTATGTGACTCTTTTGAACCTCTCGTACATGATATACAT
TCTATATTTGTTTTATGTCATAATAGGAAACAAATGTTGCTTTGGTTCGT
TTAAAGCAAGATACATGGTTAAAATTATGTCTGTGGTTATGACGTATTTG
AATATCAGTGGAAGAAGTAAGAAAAAAATCGTACATCTTTCTCTTTGTAG
GGCCCAAGCC Coding sequence (CDS) from alignment at Sc0000018:3791474..3794383+ >transcript:BL97410_cuf3 ID=transcript:BL97410_cuf3|Name=transcript:BL97410_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=6576bp|location=Sequence derived from alignment at Sc0000018:3791474..3794383+ (Branchiostoma lanceolatum)
ACGGGAGATGGCATGTTCTTCCAGTGGGTGTTCTGCTCTGCGGTATGGTG
TGTTGGTCTGGTGGTGAACGTTATTCAGGGCTTCCCCAAGTTCTACGCCA
TCTCAATGATTGGAGGAGCTCTGTGGTGTACAGGCAACGCAGTCGTTGTG
CCAATCCTGAAGACAATAGGGCTGGGGATGGGCATGCTGTTCTGGGCTTC
TACCAACCTCCTGATGGGCTGGTTCAGTGGAAGGTTCGGCTGGTTCGGGA
TGCGGCCGGACAGGTTAACCAGGCCTGCCTTAGACTATGCCGGGGTGGCC
CTGGGCATTGTCAGGACGATAATACTGTCCTTTGTGAAAAGTGACGTCAT
GGACAAGCCTGAAACTGATCACGAGCCATTGCTGGAAGAAGACAGAATAC
GTGGTGTCGTCAACAGTCCACGTGAGAGGGTTCCCTCATCAGAACCTGAT
GACTACTCCTGGGTGGATAAACTTTCTCCTGGGAAAAAGAGAATCACGGG
AATCACACTGGCGATGTTTTCTGGCTGCATGTACGGTCTTAATTTTGTAC
CGGTTATTTACGCACAGCAACACTACGAAGGAGCCACAGACAATGGTCTA
GATTATGTTTTCGCTCACTTCAGTGGTATCTACGCGACATCTACGCTATA
CTTCATACTATACTGCATGTACACGAGAAACAAGCCTGCGGTTTTCCCGC
GAGCCATTCTACCGGCCCTACTGTCGGGGACCATGAGGGCCGTAGCTCAG
GCTGCCTGGTTCGTGGCCAATCAGAGGCTGCAGGAGAGCGTCAGTTTCCC
CATCATCACTACGGGCCCAAGCACGGGAGATGGCATGTTCTTCCAGTGGG
TGTTCTGCTCTGCGGTATGGTGTGTTGGTCTGGTGGTGAACGTTATTCAG
GGCTTCCCCAAGTTCTACGCCATCTCAATGATTGGAGGAGCTCTGTGGTG
TACAGGCAACGCAGTCGTTGTGCCAATCCTGAAGACAATAGGGCTGGGGA
TGGGCATGCTGTTCTGGGCTTCTACCAACCTCCTGATGGGCTGGTTCAGT
GGAAGGTTCGGCTGGTTCGGGATGCGGCCGGACAGGTTAACCAGGCCTGC
CTTAGACTATGCCGGGGTGGCCCTGGGCATTGTCAGGACGATAATACTGT
CCTTTGTGAAAAGTGACGTCATGGACAAGCCTGAAACTGATCACGAGCCA
TTGCTGGAAGAAGACAGAATACGTGGTGTCGTCAACAGTCCACGTGAGAG
GGTTCCCTCATCAGAACCTGATGACTACTCCTGGGTGGATAAACTTTCTC
CTGGGAAAAAGAGAATCACGGGAATCACACTGGCGATGTTTTCTGGCTGC
ATGTACGGTCTTAATTTTGTACCGGTTATTTACGCACAGCAACACTACGA
AGGAGCCACAGACAATGGTCTAGATTATGTTTTCGCTCACTTCAGTGGTA
TCTACGCGACATCTACGCTATACTTCATACTATACTGCATGTACACGAGA
AACAAGCCTGCGGTTTTCCCGCGAGCCATTCTACCGGCCCTACTGTCGGG
GACCATGAGGGCCGTAGCTCAGGCTGCCTGGTTCGTGGCCAATCAGAGGC
TGCAGGAGAGCGTCAGTTTCCCCATCATCACTACGGGCCCAAGCACGGGA
GATGGCATGTTCTTCCAGTGGGTGTTCTGCTCTGCGGTATGGTGTGTTGG
TCTGGTGGTGAACGTTATTCAGGGCTTCCCCAAGTTCTACGCCATCTCAA
TGATTGGAGGAGCTCTGTGGTGTACAGGCAACGCAGTCGTTGTGCCAATC
CTGAAGACAATAGGGCTGGGGATGGGCATGCTGTTCTGGGCTTCTACCAA
CCTCCTGATGGGCTGGTTCAGTGGAAGGTTCGGCTGGTTCGGGATGCGGC
CGGACAGGTTAACCAGGCCTGCCTTAGACTATGCCGGGGTGGCCCTGGGC
ATTGTCAGGACGATAATACTGTCCTTTGTGAAAAGTGACGTCATGGACAA
GCCTGAAACTGATCACGAGCCATTGCTGGAAGAAGACAGAATACGTGGTG
TCGTCAACAGTCCACGTGAGAGGGTTCCCTCATCAGAACCTGATGACTAC
TCCTGGGTGGATAAACTTTCTCCTGGGAAAAAGAGAATCACGGGAATCAC
ACTGGCGATGTTTTCTGGCTGCATGTACGGTCTTAATTTTGTACCGGTTA
TTTACGCACAGCAACACTACGAAGGAGCCACAGACAATGGTCTAGATTAT
GTTTTCGCTCACTTCAGTGGTATCTACGCGACATCTACGCTATACTTCAT
ACTATACTGCATGTACACGAGAAACAAGCCTGCGGTTTTCCCGCGAGCCA
TTCTACCGGCCCTACTGTCGGGGACCATGAGGGCCGTAGCTCAGGCTGCC
TGGTTCGTGGCCAATCAGAGGCTGCAGGAGAGCGTCAGTTTCCCCATCAT
CACTACGGGCCCAAGCACGGGAGATGGCATGTTCTTCCAGTGGGTGTTCT
GCTCTGCGGTATGGTGTGTTGGTCTGGTGGTGAACGTTATTCAGGGCTTC
CCCAAGTTCTACGCCATCTCAATGATTGGAGGAGCTCTGTGGTGTACAGG
CAACGCAGTCGTTGTGCCAATCCTGAAGACAATAGGGCTGGGGATGGGCA
TGCTGTTCTGGGCTTCTACCAACCTCCTGATGGGCTGGTTCAGTGGAAGG
TTCGGCTGGTTCGGGATGCGGCCGGACAGGTTAACCAGGCCTGCCTTAGA
CTATGCCGGGGTGGCCCTGGGCATTGTCAGGACGATAATACTGTCCTTTG
TGAAAAGTGACGTCATGGACAAGCCTGAAACTGATCACGAGCCATTGCTG
GAAGAAGACAGAATACGTGGTGTCGTCAACAGTCCACGTGAGAGGGTTCC
CTCATCAGAACCTGATGACTACTCCTGGGTGGATAAACTTTCTCCTGGGA
AAAAGAGAATCACGGGAATCACACTGGCGATGTTTTCTGGCTGCATGTAC
GGTCTTAATTTTGTACCGGTTATTTACGCACAGCAACACTACGAAGGAGC
CACAGACAATGGTCTAGATTATGTTTTCGCTCACTTCAGTGGTATCTACG
CGACATCTACGCTATACTTCATACTATACTGCATGTACACGAGAAACAAG
CCTGCGGTTTTCCCGCGAGCCATTCTACCGGCCCTACTGTCGGGGACCAT
GAGGGCCGTAGCTCAGGCTGCCTGGTTCGTGGCCAATCAGAGGCTGCAGG
AGAGCGTCAGTTTCCCCATCATCACTACGGGCCCAAGCACGGGAGATGGC
ATGTTCTTCCAGTGGGTGTTCTGCTCTGCGGTATGGTGTGTTGGTCTGGT
GGTGAACGTTATTCAGGGCTTCCCCAAGTTCTACGCCATCTCAATGATTG
GAGGAGCTCTGTGGTGTACAGGCAACGCAGTCGTTGTGCCAATCCTGAAG
ACAATAGGGCTGGGGATGGGCATGCTGTTCTGGGCTTCTACCAACCTCCT
GATGGGCTGGTTCAGTGGAAGGTTCGGCTGGTTCGGGATGCGGCCGGACA
GGTTAACCAGGCCTGCCTTAGACTATGCCGGGGTGGCCCTGGGCATTGTC
AGGACGATAATACTGTCCTTTGTGAAAAGTGACGTCATGGACAAGCCTGA
AACTGATCACGAGCCATTGCTGGAAGAAGACAGAATACGTGGTGTCGTCA
ACAGTCCACGTGAGAGGGTTCCCTCATCAGAACCTGATGACTACTCCTGG
GTGGATAAACTTTCTCCTGGGAAAAAGAGAATCACGGGAATCACACTGGC
GATGTTTTCTGGCTGCATGTACGGTCTTAATTTTGTACCGGTTATTTACG
CACAGCAACACTACGAAGGAGCCACAGACAATGGTCTAGATTATGTTTTC
GCTCACTTCAGTGGTATCTACGCGACATCTACGCTATACTTCATACTATA
CTGCATGTACACGAGAAACAAGCCTGCGGTTTTCCCGCGAGCCATTCTAC
CGGCCCTACTGTCGGGGACCATGAGGGCCGTAGCTCAGGCTGCCTGGTTC
GTGGCCAATCAGAGGCTGCAGGAGAGCGTCAGTTTCCCCATCATCACTAC
GGGCCCAAGCACGGGAGATGGCATGTTCTTCCAGTGGGTGTTCTGCTCTG
CGGTATGGTGTGTTGGTCTGGTGGTGAACGTTATTCAGGGCTTCCCCAAG
TTCTACGCCATCTCAATGATTGGAGGAGCTCTGTGGTGTACAGGCAACGC
AGTCGTTGTGCCAATCCTGAAGACAATAGGGCTGGGGATGGGCATGCTGT
TCTGGGCTTCTACCAACCTCCTGATGGGCTGGTTCAGTGGAAGGTTCGGC
TGGTTCGGGATGCGGCCGGACAGGTTAACCAGGCCTGCCTTAGACTATGC
CGGGGTGGCCCTGGGCATTGTCAGGACGATAATACTGTCCTTTGTGAAAA
GTGACGTCATGGACAAGCCTGAAACTGATCACGAGCCATTGCTGGAAGAA
GACAGAATACGTGGTGTCGTCAACAGTCCACGTGAGAGGGTTCCCTCATC
AGAACCTGATGACTACTCCTGGGTGGATAAACTTTCTCCTGGGAAAAAGA
GAATCACGGGAATCACACTGGCGATGTTTTCTGGCTGCATGTACGGTCTT
AATTTTGTACCGGTTATTTACGCACAGCAACACTACGAAGGAGCCACAGA
CAATGGTCTAGATTATGTTTTCGCTCACTTCAGTGGTATCTACGCGACAT
CTACGCTATACTTCATACTATACTGCATGTACACGAGAAACAAGCCTGCG
GTTTTCCCGCGAGCCATTCTACCGGCCCTACTGTCGGGGACCATGAGGGC
CGTAGCTCAGGCTGCCTGGTTCGTGGCCAATCAGAGGCTGCAGGAGAGCG
TCAGTTTCCCCATCATCACTACGGGCCCAAGCACGGGAGATGGCATGTTC
TTCCAGTGGGTGTTCTGCTCTGCGGTATGGTGTGTTGGTCTGGTGGTGAA
CGTTATTCAGGGCTTCCCCAAGTTCTACGCCATCTCAATGATTGGAGGAG
CTCTGTGGTGTACAGGCAACGCAGTCGTTGTGCCAATCCTGAAGACAATA
GGGCTGGGGATGGGCATGCTGTTCTGGGCTTCTACCAACCTCCTGATGGG
CTGGTTCAGTGGAAGGTTCGGCTGGTTCGGGATGCGGCCGGACAGGTTAA
CCAGGCCTGCCTTAGACTATGCCGGGGTGGCCCTGGGCATTGTCAGGACG
ATAATACTGTCCTTTGTGAAAAGTGACGTCATGGACAAGCCTGAAACTGA
TCACGAGCCATTGCTGGAAGAAGACAGAATACGTGGTGTCGTCAACAGTC
CACGTGAGAGGGTTCCCTCATCAGAACCTGATGACTACTCCTGGGTGGAT
AAACTTTCTCCTGGGAAAAAGAGAATCACGGGAATCACACTGGCGATGTT
TTCTGGCTGCATGTACGGTCTTAATTTTGTACCGGTTATTTACGCACAGC
AACACTACGAAGGAGCCACAGACAATGGTCTAGATTATGTTTTCGCTCAC
TTCAGTGGTATCTACGCGACATCTACGCTATACTTCATACTATACTGCAT
GTACACGAGAAACAAGCCTGCGGTTTTCCCGCGAGCCATTCTACCGGCCC
TACTGTCGGGGACCATGAGGGCCGTAGCTCAGGCTGCCTGGTTCGTGGCC
AATCAGAGGCTGCAGGAGAGCGTCAGTTTCCCCATCATCACTACGGGCCC
AAGCACGGGAGATGGCATGTTCTTCCAGTGGGTGTTCTGCTCTGCGGTAT
GGTGTGTTGGTCTGGTGGTGAACGTTATTCAGGGCTTCCCCAAGTTCTAC
GCCATCTCAATGATTGGAGGAGCTCTGTGGTGTACAGGCAACGCAGTCGT
TGTGCCAATCCTGAAGACAATAGGGCTGGGGATGGGCATGCTGTTCTGGG
CTTCTACCAACCTCCTGATGGGCTGGTTCAGTGGAAGGTTCGGCTGGTTC
GGGATGCGGCCGGACAGGTTAACCAGGCCTGCCTTAGACTATGCCGGGGT
GGCCCTGGGCATTGTCAGGACGATAATACTGTCCTTTGTGAAAAGTGACG
TCATGGACAAGCCTGAAACTGATCACGAGCCATTGCTGGAAGAAGACAGA
ATACGTGGTGTCGTCAACAGTCCACGTGAGAGGGTTCCCTCATCAGAACC
TGATGACTACTCCTGGGTGGATAAACTTTCTCCTGGGAAAAAGAGAATCA
CGGGAATCACACTGGCGATGTTTTCTGGCTGCATGTACGGTCTTAATTTT
GTACCGGTTATTTACGCACAGCAACACTACGAAGGAGCCACAGACAATGG
TCTAGATTATGTTTTCGCTCACTTCAGTGGTATCTACGCGACATCTACGC
TATACTTCATACTATACTGCATGTACACGAGAAACAAGCCTGCGGTTTTC
CCGCGAGCCATTCTACCGGCCCTACTGTCGGGGACCATGAGGGCCGTAGC
TCAGGCTGCCTGGTTCGTGGCCAATCAGAGGCTGCAGGAGAGCGTCAGTT
TCCCCATCATCACTACGGGCCCAAGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000018 | genome | Sc0000018:3791474..3794383 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97410_cuf3 |
| Biotype | protein_coding |
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