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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97409_cuf13 >transcript:BL97409_cuf13-protein ID=transcript:BL97409_cuf13-protein|Name=transcript:BL97409_cuf13|organism=Branchiostoma lanceolatum|type=polypeptide|length=303bp
KMALSMIKTYLVGLQATISQLLQGHRCLKDQPRQDGKVAIVTGGRSQDEA NIAIETIKQSCPEAKVEFIRLDLASMKSIHEFVEKFKSRQLPLHLLINNA GVMLTPYSLTEDGFETHFGINHLGHFLLTNLLLDILRSSGKPDHWSRILF VSSVVHFIGDIDFPDLNSSKHYSPHASYAQSKLAIILTTNELQRRLLADL SHVTANALHPGVVNSDLYQHVMWPLRVVQRMMGWIGLTKTPEQGADTILY AAMSPDLEGIGGRYLDNCQEVPSSDQSYDKDLQKRLWEESCRLVHLENLS LNA Run BLAST on NCBI mRNA from alignment at Sc0000018:2260423..2264549+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97409_cuf13 ID=transcript:BL97409_cuf13|Name=transcript:BL97409_cuf13|organism=Branchiostoma lanceolatum|type=mRNA|length=4127bp|location=Sequence derived from alignment at Sc0000018:2260423..2264549+ (Branchiostoma lanceolatum) AAGATGGCGCTCTCCATGATCAAAACGTATCTTGTTGGACTTCAAGCGAC
GATTTCTCAGCTATTGCAGGGCCACCGATGTCTGAAAGGTTATGATTTTA
TCGTCTTATAGTATAGAGAATGGTATGAATGCTTGCTGCTGGCATGGCGT
TTGTATGAAACGTGTAATTCGGGAAGTATTGTGAAGCAAGTGGGAGGGGG
GCGAAACCATGCCTGGTCTGTTGGCATATACATGACTCTTATTAACATCC
TGACAGTGGATATTATGAGACTCTCTGGAAGAATGGACGGAATAAATCCG
CACTGTGTCAAAAAATGCTTTCTTAGAATTTCAAAATTCTTCAGGCCGAT
TAAGAGAATCCTCAGAATATGTCATAATTTGACCTAAGCTTGCAAGTAAG
TAAGTGCACTTCTGGGTTGCTAGAAATTACTGATCATCTCTTCAAACCAT
GACGACATGAAACTCAAGTGAATATACTGTTTTTATTTGTATCTACTCCC
GCAGATTTATGCACTCACTGTTAAATCTTGAATTATTTGAAAGAAATGTT
GCAACAAGCTTACCAGCACCAGTATTGTTTGAAAGTAAAATGAATTTCTT
TTATTTCAGATCAACCAAGACAAGATGGGAAGGTTGCCATAGTAACAGGT
GGAGCAAAGGGCATAGGATTGGAAGTGACGAAAGGACTGGCACAGCTTGG
TGTGCGTGTCTTTATAGGTACTAGTAATGATCAGTGCTATAATTGAGTTA
AACTTTTATCATTTTAAGTTTTAAAGTTTAAGTTTTGCATGATGATTTTG
GTATGCAGTCTGCCATTCACAATTCATGACAATATCACCCTCATTAAATC
AGGACCCCTATCGCTCCACGTTAGCTTGCTCATGTAGGGGCCCTGATCTT
CAGCGCCGGTAGACATGGTTCTGGCGACGTCACCACCAAAACAGCTTCAG
CCAACCAGAGGGTTTACTAAACCTCACAAATTAACCGCCAAATAAGGATA
GCTCATTATTATCCATGACCAACTGTCAGTAACAGAACCATGTCTACCGG
CGCTGAAGATGAGGGCCCCTACGTGAGCGAGCTAACGTGGAGCGATAGGG
GTCCTGATTTAATGAGGGTGGACAATATATAATGTAAAAGAAGCCTAATC
ATTGATATCATTGAATTTAAAGACAGTCGTTACTATGTACAGTGTATGGA
CAGCTGTCAATCGTTTTGCAATGCATTGTCAGGTGGGCGGAGCCAAGATG
AAGCAAACATCGCCATAGAAACTATCAAGCAGTCTTGTCCAGAAGCCAAA
GGTAAGAGGTCAATTGCATATTTTAAAAAAATGTCTTTTTCACGTCCTTG
TTTGCTGTTGCAGCTTTTTTTAAAGTATTGTCACATCTTTTTAAAGTATT
GTCACATTTTATACAACCTACATGTACATTACTATTGCCAATCCCAAACT
GAAAGTTGAATGTGTTTTACCCACAGTTGAGTTTATCAGATTGGACCTGG
CATCTATGAAGTCCATCCATGAGTTTGTAGAAAAGTTCAAGTCCAGACAA
CTACCATTACATCTGCTTATCAACAATGGTATGTACCCATTGATATTGAT
ATGTCAAAATATTTCACTTGGAAATTATGTCACTGTGACATCAATATGTT
TCTTCAACTGTTGCATTTTCTATGTATTTTTTTAATCATCATCCTGGTTT
TGTGATCTTTTTCTTTATCTATTATTTGCCTGAATGAATAGAGGTCCATA
AATAGTAGTGTAATGTAATAAAATATTGATGTACCCTCTGACTTTGACCT
AAAAAAGTGTCATATATTCCATTTAACAGCTCTGAACTACTCCAAGATAT
ATATTCATAGAAGGGCACTCCATACTTTAAACTCACTTGCCCAGTCCCAT
GCTTAAAGAAAACTATAAATGTCTATAAAATGATAATATCATAAGAAGAT
TTGATCAATATAAAAGTTTCTCTAGCTGACTGCTACCCACACCTGTGTCA
GGGAATCCCGCAGTAGTATAATTAAATACTCTTGATGGTTTATTGGTCCG
AAATTACCCATGCAATGGCAGCCAGTGCTGAATTACTGCAGGGTTTACGA
TCATATAATACAGAATAGATACATATTTGCTCCACATTTTCACTTTGTGC
AACTGTCGCAAGGGTCTGGGCGGCTGCCATTCGGCGCCAGCAGGTGACCT
CAATACGACCTTCCCCAACCGAAGTCAGGTACCCATTCACACCTGGGTAG
AGTGAGCCTTTTGATCTTGATCTTGATCGGTTACTGGGCAACACCCCTCT
TGAAACTACTACTCTCTCTCTGCAGCTGGAGTGATGTTGACCCCTTACAG
TCTAACAGAGGATGGATTTGAGACACACTTTGGAATCAACCACCTCGGTC
ACTTCCTGCTGACCAACCTGTTACTGGACATCCTGAGGTCCAGTGGAAAA
CCTGACCACTGGTCAAGAATACTATTTGTATCTTCGGTGGTACATTTCAT
TGGAGATATCGACTTTCCTGACTTAAATAGCAGGTAATGGTTAGGAGCTT
ACTAGTAGTTCACTTGACTTTATTCTGTTGAAAATCATTGCCTGCTGTAA
AAGGGTAGTATGACACACAAGAAAACCAGTCAGTGACAAAAGATAGTGGA
TGCTACCTGAAACAATTGACCTTTTCTAAAGTCTATCCAGTTGCTTGAGT
ATTGTAATTCTTGATTTGTTAACTGTAACTTAATTTTAGCTGATTTAACG
GTCACAAGTCAAATTCATCATCGCTTATGTGTGATCACTTATATTTGAGA
CAGTAATGTTTGTTCCCACCGTTAGAATTAAGTGCCGTGACCTACTCCAT
TTTCCCCCAAACGCTATATTTTCCTGCCACTATATTAAAGTGATTTACAG
TATCCGTTTTCTTGCATTATAATCTAATGACTTTGATGTCTAAGCTTTAT
CGACATAGAATGACACTTACTTGACTAAGAGTTGATAGTTTTGTTTTCTA
CAGTAAGAAGGACATGAGTGTGCATTGACCAAGCCTGTTTTTTTGGCGTT
TTTTAGTTTGAGAAAACAAGGAGGTTTAAACCTCCTTGGAGAAAACAAGA
AAATATTTGTCAGCTTCTATAAAGTTTTCCTTTCTCTACAATTATCTATC
TGTTGACAGATCTTTTGAACATGCAATTTCTTTACTGATCTTTCATTTGC
AGCAAACACTACTCTCCACATGCAAGTTACGCTCAGAGTAAGCTTGCCAT
CATCCTCACCACAAATGAACTTCAGAGAAGGCTATTGGCTGACCTAAGTC
ATGTGACTGCCAATGCTCTTCATCCTGGAGTTGTGAACTCCGACCTCTAC
CAGCATGTCATGTGGCCTTTGAGAGTGGTACAAAGGATGATGGGATGGAT
TGGTTTAACAAAGGTATTATACTAGATGTCATCATTCCAGTAGGGTCCTG
TCCTGGATCTGATTATTTGTTGTTACTTGTATTTCAAAATACTATAAAGT
AAACAAAATAAGGAGGGAAATATTCCGCATTTGCTTGCAAATGATGGCTC
ACTACCCTAGATCTGCTTTTGTCTATTGAATATGCAAAAGATACAAATAG
CTTGTCACAGGGTGTCCCTGTGGTGTAGTGGTCTGCGCTTCTGTTACTTT
CCACATCTGGTTCTGATTACTTGGAACCAGAAGGCCTGAGTTCAACTCCC
GGCTAGGACACCTCTGGACAAGAGGCGCATTGAGTCATCCCAAAGACTTT
ATAAAAATGGTACATACGTGTGGCCCAGGGCTATGAAACGGTGATGGACT
CCGCCCTATACACCTTATGGTGTGGGAGGATTTTAACCAACTAACTTGTC
ACATATACCTCAGACACAGACATGTACATGTATTTAATTTCCAGACACCT
GAACAAGGTGCCGACACCATCTTGTATGCTGCCATGTCTCCTGACCTCGA
GGGCATAGGAGGTCGTTACCTTGACAACTGTCAGGAAGTCCCCTCCAGCG
ACCAATCATATGACAAAGACTTACAGAAGAGACTTTGGGAGGAGAGCTGT
AGACTTGTACATTTGGAGAACCTTTCTTTAAATGCATGATAATCGAGTAT
ATAAGATGAACTGTAGTAGTAGTCCAC Coding sequence (CDS) from alignment at Sc0000018:2260423..2264549+ >transcript:BL97409_cuf13 ID=transcript:BL97409_cuf13|Name=transcript:BL97409_cuf13|organism=Branchiostoma lanceolatum|type=CDS|length=6384bp|location=Sequence derived from alignment at Sc0000018:2260423..2264549+ (Branchiostoma lanceolatum) AAGATGGCGCTCTCCATGATCAAAACGTATCTTGTTGGACTTCAAGCGAC GATTTCTCAGCTATTGCAGGGCCACCGATGTCTGAAAGATCAACCAAGAC AAGATGGGAAGGTTGCCATAGTAACAGGTGGGCGGAGCCAAGATGAAGCA AACATCGCCATAGAAACTATCAAGCAGTCTTGTCCAGAAGCCAAAGTTGA GTTTATCAGATTGGACCTGGCATCTATGAAGTCCATCCATGAGTTTGTAG AAAAGTTCAAGTCCAGACAACTACCATTACATCTGCTTATCAACAATGCT GGAGTGATGTTGACCCCTTACAGTCTAACAGAGGATGGATTTGAGACACA CTTTGGAATCAACCACCTCGGTCACTTCCTGCTGACCAACCTGTTACTGG ACATCCTGAGGTCCAGTGGAAAACCTGACCACTGGTCAAGAATACTATTT GTATCTTCGGTGGTACATTTCATTGGAGATATCGACTTTCCTGACTTAAA TAGCAGCAAACACTACTCTCCACATGCAAGTTACGCTCAGAGTAAGCTTG CCATCATCCTCACCACAAATGAACTTCAGAGAAGGCTATTGGCTGACCTA AGTCATGTGACTGCCAATGCTCTTCATCCTGGAGTTGTGAACTCCGACCT CTACCAGCATGTCATGTGGCCTTTGAGAGTGGTACAAAGGATGATGGGAT GGATTGGTTTAACAAAGACACCTGAACAAGGTGCCGACACCATCTTGTAT GCTGCCATGTCTCCTGACCTCGAGGGCATAGGAGGTCGTTACCTTGACAA CTGTCAGGAAGTCCCCTCCAGCGACCAATCATATGACAAAGACTTACAGA AGAGACTTTGGGAGGAGAGCTGTAGACTTGTACATTTGGAGAACCTTTCT TTAAATGCATGAAAGATGGCGCTCTCCATGATCAAAACGTATCTTGTTGG ACTTCAAGCGACGATTTCTCAGCTATTGCAGGGCCACCGATGTCTGAAAG ATCAACCAAGACAAGATGGGAAGGTTGCCATAGTAACAGGTGGGCGGAGC CAAGATGAAGCAAACATCGCCATAGAAACTATCAAGCAGTCTTGTCCAGA AGCCAAAGTTGAGTTTATCAGATTGGACCTGGCATCTATGAAGTCCATCC ATGAGTTTGTAGAAAAGTTCAAGTCCAGACAACTACCATTACATCTGCTT ATCAACAATGCTGGAGTGATGTTGACCCCTTACAGTCTAACAGAGGATGG ATTTGAGACACACTTTGGAATCAACCACCTCGGTCACTTCCTGCTGACCA ACCTGTTACTGGACATCCTGAGGTCCAGTGGAAAACCTGACCACTGGTCA AGAATACTATTTGTATCTTCGGTGGTACATTTCATTGGAGATATCGACTT TCCTGACTTAAATAGCAGCAAACACTACTCTCCACATGCAAGTTACGCTC AGAGTAAGCTTGCCATCATCCTCACCACAAATGAACTTCAGAGAAGGCTA TTGGCTGACCTAAGTCATGTGACTGCCAATGCTCTTCATCCTGGAGTTGT GAACTCCGACCTCTACCAGCATGTCATGTGGCCTTTGAGAGTGGTACAAA GGATGATGGGATGGATTGGTTTAACAAAGACACCTGAACAAGGTGCCGAC ACCATCTTGTATGCTGCCATGTCTCCTGACCTCGAGGGCATAGGAGGTCG TTACCTTGACAACTGTCAGGAAGTCCCCTCCAGCGACCAATCATATGACA AAGACTTACAGAAGAGACTTTGGGAGGAGAGCTGTAGACTTGTACATTTG GAGAACCTTTCTTTAAATGCATGAAAGATGGCGCTCTCCATGATCAAAAC GTATCTTGTTGGACTTCAAGCGACGATTTCTCAGCTATTGCAGGGCCACC GATGTCTGAAAGATCAACCAAGACAAGATGGGAAGGTTGCCATAGTAACA GGTGGGCGGAGCCAAGATGAAGCAAACATCGCCATAGAAACTATCAAGCA GTCTTGTCCAGAAGCCAAAGTTGAGTTTATCAGATTGGACCTGGCATCTA TGAAGTCCATCCATGAGTTTGTAGAAAAGTTCAAGTCCAGACAACTACCA TTACATCTGCTTATCAACAATGCTGGAGTGATGTTGACCCCTTACAGTCT AACAGAGGATGGATTTGAGACACACTTTGGAATCAACCACCTCGGTCACT TCCTGCTGACCAACCTGTTACTGGACATCCTGAGGTCCAGTGGAAAACCT GACCACTGGTCAAGAATACTATTTGTATCTTCGGTGGTACATTTCATTGG AGATATCGACTTTCCTGACTTAAATAGCAGCAAACACTACTCTCCACATG CAAGTTACGCTCAGAGTAAGCTTGCCATCATCCTCACCACAAATGAACTT CAGAGAAGGCTATTGGCTGACCTAAGTCATGTGACTGCCAATGCTCTTCA TCCTGGAGTTGTGAACTCCGACCTCTACCAGCATGTCATGTGGCCTTTGA GAGTGGTACAAAGGATGATGGGATGGATTGGTTTAACAAAGACACCTGAA CAAGGTGCCGACACCATCTTGTATGCTGCCATGTCTCCTGACCTCGAGGG CATAGGAGGTCGTTACCTTGACAACTGTCAGGAAGTCCCCTCCAGCGACC AATCATATGACAAAGACTTACAGAAGAGACTTTGGGAGGAGAGCTGTAGA CTTGTACATTTGGAGAACCTTTCTTTAAATGCATGAAAGATGGCGCTCTC CATGATCAAAACGTATCTTGTTGGACTTCAAGCGACGATTTCTCAGCTAT TGCAGGGCCACCGATGTCTGAAAGATCAACCAAGACAAGATGGGAAGGTT GCCATAGTAACAGGTGGGCGGAGCCAAGATGAAGCAAACATCGCCATAGA AACTATCAAGCAGTCTTGTCCAGAAGCCAAAGTTGAGTTTATCAGATTGG ACCTGGCATCTATGAAGTCCATCCATGAGTTTGTAGAAAAGTTCAAGTCC AGACAACTACCATTACATCTGCTTATCAACAATGCTGGAGTGATGTTGAC CCCTTACAGTCTAACAGAGGATGGATTTGAGACACACTTTGGAATCAACC ACCTCGGTCACTTCCTGCTGACCAACCTGTTACTGGACATCCTGAGGTCC AGTGGAAAACCTGACCACTGGTCAAGAATACTATTTGTATCTTCGGTGGT ACATTTCATTGGAGATATCGACTTTCCTGACTTAAATAGCAGCAAACACT ACTCTCCACATGCAAGTTACGCTCAGAGTAAGCTTGCCATCATCCTCACC ACAAATGAACTTCAGAGAAGGCTATTGGCTGACCTAAGTCATGTGACTGC CAATGCTCTTCATCCTGGAGTTGTGAACTCCGACCTCTACCAGCATGTCA TGTGGCCTTTGAGAGTGGTACAAAGGATGATGGGATGGATTGGTTTAACA AAGACACCTGAACAAGGTGCCGACACCATCTTGTATGCTGCCATGTCTCC TGACCTCGAGGGCATAGGAGGTCGTTACCTTGACAACTGTCAGGAAGTCC CCTCCAGCGACCAATCATATGACAAAGACTTACAGAAGAGACTTTGGGAG GAGAGCTGTAGACTTGTACATTTGGAGAACCTTTCTTTAAATGCATGAAA GATGGCGCTCTCCATGATCAAAACGTATCTTGTTGGACTTCAAGCGACGA TTTCTCAGCTATTGCAGGGCCACCGATGTCTGAAAGATCAACCAAGACAA GATGGGAAGGTTGCCATAGTAACAGGTGGGCGGAGCCAAGATGAAGCAAA CATCGCCATAGAAACTATCAAGCAGTCTTGTCCAGAAGCCAAAGTTGAGT TTATCAGATTGGACCTGGCATCTATGAAGTCCATCCATGAGTTTGTAGAA AAGTTCAAGTCCAGACAACTACCATTACATCTGCTTATCAACAATGCTGG AGTGATGTTGACCCCTTACAGTCTAACAGAGGATGGATTTGAGACACACT TTGGAATCAACCACCTCGGTCACTTCCTGCTGACCAACCTGTTACTGGAC ATCCTGAGGTCCAGTGGAAAACCTGACCACTGGTCAAGAATACTATTTGT ATCTTCGGTGGTACATTTCATTGGAGATATCGACTTTCCTGACTTAAATA GCAGCAAACACTACTCTCCACATGCAAGTTACGCTCAGAGTAAGCTTGCC ATCATCCTCACCACAAATGAACTTCAGAGAAGGCTATTGGCTGACCTAAG TCATGTGACTGCCAATGCTCTTCATCCTGGAGTTGTGAACTCCGACCTCT ACCAGCATGTCATGTGGCCTTTGAGAGTGGTACAAAGGATGATGGGATGG ATTGGTTTAACAAAGACACCTGAACAAGGTGCCGACACCATCTTGTATGC TGCCATGTCTCCTGACCTCGAGGGCATAGGAGGTCGTTACCTTGACAACT GTCAGGAAGTCCCCTCCAGCGACCAATCATATGACAAAGACTTACAGAAG AGACTTTGGGAGGAGAGCTGTAGACTTGTACATTTGGAGAACCTTTCTTT AAATGCATGAAAGATGGCGCTCTCCATGATCAAAACGTATCTTGTTGGAC TTCAAGCGACGATTTCTCAGCTATTGCAGGGCCACCGATGTCTGAAAGAT CAACCAAGACAAGATGGGAAGGTTGCCATAGTAACAGGTGGGCGGAGCCA AGATGAAGCAAACATCGCCATAGAAACTATCAAGCAGTCTTGTCCAGAAG CCAAAGTTGAGTTTATCAGATTGGACCTGGCATCTATGAAGTCCATCCAT GAGTTTGTAGAAAAGTTCAAGTCCAGACAACTACCATTACATCTGCTTAT CAACAATGCTGGAGTGATGTTGACCCCTTACAGTCTAACAGAGGATGGAT TTGAGACACACTTTGGAATCAACCACCTCGGTCACTTCCTGCTGACCAAC CTGTTACTGGACATCCTGAGGTCCAGTGGAAAACCTGACCACTGGTCAAG AATACTATTTGTATCTTCGGTGGTACATTTCATTGGAGATATCGACTTTC CTGACTTAAATAGCAGCAAACACTACTCTCCACATGCAAGTTACGCTCAG AGTAAGCTTGCCATCATCCTCACCACAAATGAACTTCAGAGAAGGCTATT GGCTGACCTAAGTCATGTGACTGCCAATGCTCTTCATCCTGGAGTTGTGA ACTCCGACCTCTACCAGCATGTCATGTGGCCTTTGAGAGTGGTACAAAGG ATGATGGGATGGATTGGTTTAACAAAGACACCTGAACAAGGTGCCGACAC CATCTTGTATGCTGCCATGTCTCCTGACCTCGAGGGCATAGGAGGTCGTT ACCTTGACAACTGTCAGGAAGTCCCCTCCAGCGACCAATCATATGACAAA GACTTACAGAAGAGACTTTGGGAGGAGAGCTGTAGACTTGTACATTTGGA GAACCTTTCTTTAAATGCATGAAAGATGGCGCTCTCCATGATCAAAACGT ATCTTGTTGGACTTCAAGCGACGATTTCTCAGCTATTGCAGGGCCACCGA TGTCTGAAAGATCAACCAAGACAAGATGGGAAGGTTGCCATAGTAACAGG TGGGCGGAGCCAAGATGAAGCAAACATCGCCATAGAAACTATCAAGCAGT CTTGTCCAGAAGCCAAAGTTGAGTTTATCAGATTGGACCTGGCATCTATG AAGTCCATCCATGAGTTTGTAGAAAAGTTCAAGTCCAGACAACTACCATT ACATCTGCTTATCAACAATGCTGGAGTGATGTTGACCCCTTACAGTCTAA CAGAGGATGGATTTGAGACACACTTTGGAATCAACCACCTCGGTCACTTC CTGCTGACCAACCTGTTACTGGACATCCTGAGGTCCAGTGGAAAACCTGA CCACTGGTCAAGAATACTATTTGTATCTTCGGTGGTACATTTCATTGGAG ATATCGACTTTCCTGACTTAAATAGCAGCAAACACTACTCTCCACATGCA AGTTACGCTCAGAGTAAGCTTGCCATCATCCTCACCACAAATGAACTTCA GAGAAGGCTATTGGCTGACCTAAGTCATGTGACTGCCAATGCTCTTCATC CTGGAGTTGTGAACTCCGACCTCTACCAGCATGTCATGTGGCCTTTGAGA GTGGTACAAAGGATGATGGGATGGATTGGTTTAACAAAGACACCTGAACA AGGTGCCGACACCATCTTGTATGCTGCCATGTCTCCTGACCTCGAGGGCA TAGGAGGTCGTTACCTTGACAACTGTCAGGAAGTCCCCTCCAGCGACCAA TCATATGACAAAGACTTACAGAAGAGACTTTGGGAGGAGAGCTGTAGACT TGTACATTTGGAGAACCTTTCTTTAAATGCATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000018 | genome | Sc0000018:2260423..2264549 + |
Properties
Property Name | Value |
Transcript id | BL97409_cuf13 |
Biotype | protein_coding |
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