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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97406_cuf4 >transcript:BL97406_cuf4-protein ID=transcript:BL97406_cuf4-protein|Name=transcript:BL97406_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=264bp
ILKCIGMGMGMLIWGSFNLMMGWFSGRFGWFGLKPQDKFTRPPLDYAGFG
LAVLSVAMFLFVKSEGKRTPSAEEQRLLVSKETLNSRYGTSSAAAVEESD
DSWVDRLSSNQKRLVGILLSACAGCAYGTSFAPVIYAQEHYTGASQNGLD
YVFAHFSGIYATSTLYFILYAMYMKNKPKVFPRAILPTLLSGLMWGIAES
GWFVANQKLQESVSFPIISTGPGMIAALWSIFYFKEIKGARNLSILALAF
AVTVAGALLTAFSY Run BLAST on NCBI mRNA from alignment at Sc0000018:3796707..3800337+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97406_cuf4 ID=transcript:BL97406_cuf4|Name=transcript:BL97406_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=3631bp|location=Sequence derived from alignment at Sc0000018:3796707..3800337+ (Branchiostoma lanceolatum)
CGATCCTGAAGTGTATAGGCATGGGCATGGGCATGCTCATCTGGGGGTCC
TTCAACCTCATGATGGGCTGGTTCAGCGGGCGGTTCGGCTGGTTCGGACT
GAAGCCGCAGGACAAGTTTACCCGCCCGCCGCTGGACTACGCTGGCTTCG
GGTTAGCCGTTCTAAGGTGAAAAAAACACAGTTTCAAAACGCTTACCAGG
ACACACCAGCTAGGCCGAGCGGAGTTGTCATTTGTCGTATCATATCAGTC
AGTCTTTGATAAGGAAAAAATGCAATTATGATAATGCAGGGGCAAAAACA
GCAATAATTCAAGACTGAGAATACCACACAGAAAAGAAGATTATCTCTTT
CTTTCACGTCCAAAGAACACCACGGCTATCTCGTCAAACTTGCACATGTC
CGTCTTTATTTCAGTGTTGCCATGTTTCTATTTGTGAAGAGCGAAGGAAA
GAGAACGCCCTCGGCAGAAGAACAGCGCCTGTTGGTCAGCAAGGTAACTA
TATTTCTTACACCGTATTGCTTTTGAAGCAAGGATAGAACTCTACCCCAA
GACAACGTACGGTGACTATGCTTTTTTTGTCCAAAGAAGATAAACGCTTA
TCTCCTTTTGGACAAAAAAGCATAGTCACCGTACGTTTTCTTGGGGTACA
GTTTTGTCCGTGATCAAGGGTAGCCCCCTTCGCAGACTTCTAGGAGCATC
GGTGTTTTTTTTTGTGGGGGGGGGGGGCTGACTCACGACCCCGGAAAAAT
AAACGATGAGGCTCCTAGACGTATGCGAAGGAGGCTAGATCAAGTGATTC
ACCCATACTAATCATAATAAACAAAACTACGGTTAACCATAATGTTTGCA
TTTATTTTAGGAGACACTCAACAGCCGTTACGGCACCAGTTCTGCTGCAG
CAGTGGAGGAATCGGACGACTCCTGGGTGGATAGACTGTCTTCCAATCAG
AAGCGGCTAGTGTGAGTTCACAACTAAGTAGTAGTAACGTTTACTTAGTA
GTAGTCTACTGTGTTCTGCTGCTGCAGTGGTCACAATTTAGGGTTTTATC
AATCAGTCCAAATCTACCAAATTATCTATCTATAATATATATATATATGA
CGTTACATGGAATCAACAACAGAATCAAGAACTCTGGTCTTCTTATCAAG
AACGCATCAGAAAGATTCAGTGTAAATATCTTGAAGTTAACCATGTGGTA
TCTTTACTCCAGTGGCATACTGCTGTCTGCGTGTGCAGGCTGTGCGTACG
GGACGTCCTTTGCGCCGGTAATTTACGCACAGGAACATTACACGGGAGCC
TCACAGAATGGTATGTGTCACTGTAGACATCTACTCATATATATATAAGT
GGATGATGCACTGATGATGTATGGCAATAATTACGTTCACAGTGCATATT
AGGAATCATAAAACACTCACACATATACACGCACAAGCCAAAACTTCACT
GCCTTGTAGAGAAGTAACCAACACTTCTCATTGTAAATTTTCCTCAATAC
GTTTTTCTGTAGGACTGGACTATGTTTTTGCTCACTTCTCTGGTATCTAC
GCTACATCTACTCTGTATTTCATCCTGTACGCCATGTACATGAAGAACAA
ACCTAAAGTGTTCCCCAGAGCCATTCTCCCTACACTTTTATCTGGACTTA
TGTGGGGCATCGCTGAGTCAGGGTGGTTTGTGGCCAACCAGAAGCTTCAA
GAGAGCGTCAGCTTCCCCATAATCTCAACGGTATGTTAACATTTCCACAT
CTCTTACACACCACAAACTTTTACATTGTGCCACAAGGGATTACCCAAAA
CAAAGCCCTACATAAAACGAGAATTTCTGCCCTTTCACACTAAGGTTGAT
CCTATTTCATCCATACGTTGATGAAGGTTAAACACCCAGGTAAACAATAC
TAACATTCAGTTCAAACTCTACTACTGGAGGAATTACGGATATTACGGTA
TTTCATACATAGTGTTGTTCGACATGTATTCTGCAGGGTCCGGGAATGAT
TGCAGCACTTTGGAGTATTTTCTATTTCAAAGAAATCAAGGTATGGAACT
CTCATCAAAGCAGTTAGTTGCCTGTCTTGTATTGTGCTGAATATTGTTAT
CTTTTGTCATACTTCGTATATGTCAGGATAGAGACTCGGATCTGGTAAAT
CAGCCATTTTGCCGGTAGAGATCCTGATCGAACTTTCTGTCGACAGAGAC
TCCAATCAGGATCTCTGCCACCAGAAACTCTGATTGACATAAAATCTGAT
TAGCATCTCTACCGGCAGAATTGGCAATTCCACAGTGTAACACCGGACAC
TTTAATCTGAAATGGCAGTAACTTAACAATGCCTAATATATCTTAAAAGT
AAAACATACAATTGCACTACTTATACCAGTATCATTTGAATACATGTACT
ACTGTGTTACCATAAAACAACTCTCATTCTGGTGTTGCAGGGAGCCAGGA
ATCTATCGATACTGGCATTGGCGTTTGCAGTCACTGTTGCAGGAGCCTTG
CTGACTGCTTTCTCCTATTGAAAAAAGTTTGCAGCGTGCACACAAATGTC
GCCATTTTTCTTAATGTCTATAGAAGCAATATCAGGTCAATTTTACATTT
CAAGAAATGTAACATTCATATCTATTCACATAAGTGAGTTTATGTTTTCT
ATGTGAACATACATTCAGAAGAATATCTGCTTGGAACAGCTGACCTAAGA
ATAGAATAGTTAACATATTCTAGACAATTATTGTCACAGATGATATGATG
ACAGATGGTATGATGAAATAAGAAAGCAAGTACATGTATGTTATCATCAT
AGATGTTCACATTTTTTAAAGGCACATGTTATCCTATATGTGGTCACAAT
TTGTGTTTAACACTTCTCAGTAAAACCTCTTGATAAAATGCATTGTCATC
ACAATAAGTTTTGTCCTCCTCACACTAATTGATATACATGTATATATATA
CAGATTATGTTCTGTGTAAAATACATGATCATAAAACGGTTAACCTTACT
TATGAATAATTTTGTTTTCATTGCATACAAATAACAATGCAATCCTTATC
GTAAAATATGGACAGAACAATATACATTATTACTGTTACATTTAACAGCC
AATCTATGTTGCTCTCAGTTAATCTCCAAGCAGATGAGTGATCTACCAGT
GGCAAGACAGTCTGATCCATGGGCCAGAACAAACTTGTGATACAGACCAG
TGTCTTGCCACCGGTAGACCTGCTTGGAGATTAACCCTCAGTACTCAGTC
TCTTAAAATGTTGAAGTCCTTCAGCACCTGTACTGTAGATGCAAAAACCT
CCTCCTTAGAGCCACTTGCATTAACCACCTGAAGGCTAGGATTCTCCAGC
CTCAGATAGGCTTCAACCAACCTTAAAGAGAGGAAAGTCAATAGGTACAA
GTTTAAACCAAAACAAAGCAAATATTTCTTACGAATAGTAGTAGTTAGTA
GAATGATTTATTCCTCTAAAATGACAACCAAGTTGCAGCCCAAAGGCCAA
GTACTGTTATAACATATAAAGATAAAATAAAAGCAGGTGGTGTCCATTCT
GCAGCTTTTACTTTACACAATACTACACATACATGTTCTACATAGAGACA
AAAGGCTGGACTGGGGTATGGCTACTTTTGG Coding sequence (CDS) from alignment at Sc0000018:3796707..3800337+ >transcript:BL97406_cuf4 ID=transcript:BL97406_cuf4|Name=transcript:BL97406_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=5565bp|location=Sequence derived from alignment at Sc0000018:3796707..3800337+ (Branchiostoma lanceolatum)
ATCCTGAAGTGTATAGGCATGGGCATGGGCATGCTCATCTGGGGGTCCTT
CAACCTCATGATGGGCTGGTTCAGCGGGCGGTTCGGCTGGTTCGGACTGA
AGCCGCAGGACAAGTTTACCCGCCCGCCGCTGGACTACGCTGGCTTCGGG
TTAGCCGTTCTAAGTGTTGCCATGTTTCTATTTGTGAAGAGCGAAGGAAA
GAGAACGCCCTCGGCAGAAGAACAGCGCCTGTTGGTCAGCAAGGAGACAC
TCAACAGCCGTTACGGCACCAGTTCTGCTGCAGCAGTGGAGGAATCGGAC
GACTCCTGGGTGGATAGACTGTCTTCCAATCAGAAGCGGCTAGTTGGCAT
ACTGCTGTCTGCGTGTGCAGGCTGTGCGTACGGGACGTCCTTTGCGCCGG
TAATTTACGCACAGGAACATTACACGGGAGCCTCACAGAATGGACTGGAC
TATGTTTTTGCTCACTTCTCTGGTATCTACGCTACATCTACTCTGTATTT
CATCCTGTACGCCATGTACATGAAGAACAAACCTAAAGTGTTCCCCAGAG
CCATTCTCCCTACACTTTTATCTGGACTTATGTGGGGCATCGCTGAGTCA
GGGTGGTTTGTGGCCAACCAGAAGCTTCAAGAGAGCGTCAGCTTCCCCAT
AATCTCAACGGGTCCGGGAATGATTGCAGCACTTTGGAGTATTTTCTATT
TCAAAGAAATCAAGGGAGCCAGGAATCTATCGATACTGGCATTGGCGTTT
GCAGTCACTGTTGCAGGAGCCTTGCTGACTGCTTTCTCCTATTGAATCCT
GAAGTGTATAGGCATGGGCATGGGCATGCTCATCTGGGGGTCCTTCAACC
TCATGATGGGCTGGTTCAGCGGGCGGTTCGGCTGGTTCGGACTGAAGCCG
CAGGACAAGTTTACCCGCCCGCCGCTGGACTACGCTGGCTTCGGGTTAGC
CGTTCTAAGTGTTGCCATGTTTCTATTTGTGAAGAGCGAAGGAAAGAGAA
CGCCCTCGGCAGAAGAACAGCGCCTGTTGGTCAGCAAGGAGACACTCAAC
AGCCGTTACGGCACCAGTTCTGCTGCAGCAGTGGAGGAATCGGACGACTC
CTGGGTGGATAGACTGTCTTCCAATCAGAAGCGGCTAGTTGGCATACTGC
TGTCTGCGTGTGCAGGCTGTGCGTACGGGACGTCCTTTGCGCCGGTAATT
TACGCACAGGAACATTACACGGGAGCCTCACAGAATGGACTGGACTATGT
TTTTGCTCACTTCTCTGGTATCTACGCTACATCTACTCTGTATTTCATCC
TGTACGCCATGTACATGAAGAACAAACCTAAAGTGTTCCCCAGAGCCATT
CTCCCTACACTTTTATCTGGACTTATGTGGGGCATCGCTGAGTCAGGGTG
GTTTGTGGCCAACCAGAAGCTTCAAGAGAGCGTCAGCTTCCCCATAATCT
CAACGGGTCCGGGAATGATTGCAGCACTTTGGAGTATTTTCTATTTCAAA
GAAATCAAGGGAGCCAGGAATCTATCGATACTGGCATTGGCGTTTGCAGT
CACTGTTGCAGGAGCCTTGCTGACTGCTTTCTCCTATTGAATCCTGAAGT
GTATAGGCATGGGCATGGGCATGCTCATCTGGGGGTCCTTCAACCTCATG
ATGGGCTGGTTCAGCGGGCGGTTCGGCTGGTTCGGACTGAAGCCGCAGGA
CAAGTTTACCCGCCCGCCGCTGGACTACGCTGGCTTCGGGTTAGCCGTTC
TAAGTGTTGCCATGTTTCTATTTGTGAAGAGCGAAGGAAAGAGAACGCCC
TCGGCAGAAGAACAGCGCCTGTTGGTCAGCAAGGAGACACTCAACAGCCG
TTACGGCACCAGTTCTGCTGCAGCAGTGGAGGAATCGGACGACTCCTGGG
TGGATAGACTGTCTTCCAATCAGAAGCGGCTAGTTGGCATACTGCTGTCT
GCGTGTGCAGGCTGTGCGTACGGGACGTCCTTTGCGCCGGTAATTTACGC
ACAGGAACATTACACGGGAGCCTCACAGAATGGACTGGACTATGTTTTTG
CTCACTTCTCTGGTATCTACGCTACATCTACTCTGTATTTCATCCTGTAC
GCCATGTACATGAAGAACAAACCTAAAGTGTTCCCCAGAGCCATTCTCCC
TACACTTTTATCTGGACTTATGTGGGGCATCGCTGAGTCAGGGTGGTTTG
TGGCCAACCAGAAGCTTCAAGAGAGCGTCAGCTTCCCCATAATCTCAACG
GGTCCGGGAATGATTGCAGCACTTTGGAGTATTTTCTATTTCAAAGAAAT
CAAGGGAGCCAGGAATCTATCGATACTGGCATTGGCGTTTGCAGTCACTG
TTGCAGGAGCCTTGCTGACTGCTTTCTCCTATTGAATCCTGAAGTGTATA
GGCATGGGCATGGGCATGCTCATCTGGGGGTCCTTCAACCTCATGATGGG
CTGGTTCAGCGGGCGGTTCGGCTGGTTCGGACTGAAGCCGCAGGACAAGT
TTACCCGCCCGCCGCTGGACTACGCTGGCTTCGGGTTAGCCGTTCTAAGT
GTTGCCATGTTTCTATTTGTGAAGAGCGAAGGAAAGAGAACGCCCTCGGC
AGAAGAACAGCGCCTGTTGGTCAGCAAGGAGACACTCAACAGCCGTTACG
GCACCAGTTCTGCTGCAGCAGTGGAGGAATCGGACGACTCCTGGGTGGAT
AGACTGTCTTCCAATCAGAAGCGGCTAGTTGGCATACTGCTGTCTGCGTG
TGCAGGCTGTGCGTACGGGACGTCCTTTGCGCCGGTAATTTACGCACAGG
AACATTACACGGGAGCCTCACAGAATGGACTGGACTATGTTTTTGCTCAC
TTCTCTGGTATCTACGCTACATCTACTCTGTATTTCATCCTGTACGCCAT
GTACATGAAGAACAAACCTAAAGTGTTCCCCAGAGCCATTCTCCCTACAC
TTTTATCTGGACTTATGTGGGGCATCGCTGAGTCAGGGTGGTTTGTGGCC
AACCAGAAGCTTCAAGAGAGCGTCAGCTTCCCCATAATCTCAACGGGTCC
GGGAATGATTGCAGCACTTTGGAGTATTTTCTATTTCAAAGAAATCAAGG
GAGCCAGGAATCTATCGATACTGGCATTGGCGTTTGCAGTCACTGTTGCA
GGAGCCTTGCTGACTGCTTTCTCCTATTGAATCCTGAAGTGTATAGGCAT
GGGCATGGGCATGCTCATCTGGGGGTCCTTCAACCTCATGATGGGCTGGT
TCAGCGGGCGGTTCGGCTGGTTCGGACTGAAGCCGCAGGACAAGTTTACC
CGCCCGCCGCTGGACTACGCTGGCTTCGGGTTAGCCGTTCTAAGTGTTGC
CATGTTTCTATTTGTGAAGAGCGAAGGAAAGAGAACGCCCTCGGCAGAAG
AACAGCGCCTGTTGGTCAGCAAGGAGACACTCAACAGCCGTTACGGCACC
AGTTCTGCTGCAGCAGTGGAGGAATCGGACGACTCCTGGGTGGATAGACT
GTCTTCCAATCAGAAGCGGCTAGTTGGCATACTGCTGTCTGCGTGTGCAG
GCTGTGCGTACGGGACGTCCTTTGCGCCGGTAATTTACGCACAGGAACAT
TACACGGGAGCCTCACAGAATGGACTGGACTATGTTTTTGCTCACTTCTC
TGGTATCTACGCTACATCTACTCTGTATTTCATCCTGTACGCCATGTACA
TGAAGAACAAACCTAAAGTGTTCCCCAGAGCCATTCTCCCTACACTTTTA
TCTGGACTTATGTGGGGCATCGCTGAGTCAGGGTGGTTTGTGGCCAACCA
GAAGCTTCAAGAGAGCGTCAGCTTCCCCATAATCTCAACGGGTCCGGGAA
TGATTGCAGCACTTTGGAGTATTTTCTATTTCAAAGAAATCAAGGGAGCC
AGGAATCTATCGATACTGGCATTGGCGTTTGCAGTCACTGTTGCAGGAGC
CTTGCTGACTGCTTTCTCCTATTGAATCCTGAAGTGTATAGGCATGGGCA
TGGGCATGCTCATCTGGGGGTCCTTCAACCTCATGATGGGCTGGTTCAGC
GGGCGGTTCGGCTGGTTCGGACTGAAGCCGCAGGACAAGTTTACCCGCCC
GCCGCTGGACTACGCTGGCTTCGGGTTAGCCGTTCTAAGTGTTGCCATGT
TTCTATTTGTGAAGAGCGAAGGAAAGAGAACGCCCTCGGCAGAAGAACAG
CGCCTGTTGGTCAGCAAGGAGACACTCAACAGCCGTTACGGCACCAGTTC
TGCTGCAGCAGTGGAGGAATCGGACGACTCCTGGGTGGATAGACTGTCTT
CCAATCAGAAGCGGCTAGTTGGCATACTGCTGTCTGCGTGTGCAGGCTGT
GCGTACGGGACGTCCTTTGCGCCGGTAATTTACGCACAGGAACATTACAC
GGGAGCCTCACAGAATGGACTGGACTATGTTTTTGCTCACTTCTCTGGTA
TCTACGCTACATCTACTCTGTATTTCATCCTGTACGCCATGTACATGAAG
AACAAACCTAAAGTGTTCCCCAGAGCCATTCTCCCTACACTTTTATCTGG
ACTTATGTGGGGCATCGCTGAGTCAGGGTGGTTTGTGGCCAACCAGAAGC
TTCAAGAGAGCGTCAGCTTCCCCATAATCTCAACGGGTCCGGGAATGATT
GCAGCACTTTGGAGTATTTTCTATTTCAAAGAAATCAAGGGAGCCAGGAA
TCTATCGATACTGGCATTGGCGTTTGCAGTCACTGTTGCAGGAGCCTTGC
TGACTGCTTTCTCCTATTGAATCCTGAAGTGTATAGGCATGGGCATGGGC
ATGCTCATCTGGGGGTCCTTCAACCTCATGATGGGCTGGTTCAGCGGGCG
GTTCGGCTGGTTCGGACTGAAGCCGCAGGACAAGTTTACCCGCCCGCCGC
TGGACTACGCTGGCTTCGGGTTAGCCGTTCTAAGTGTTGCCATGTTTCTA
TTTGTGAAGAGCGAAGGAAAGAGAACGCCCTCGGCAGAAGAACAGCGCCT
GTTGGTCAGCAAGGAGACACTCAACAGCCGTTACGGCACCAGTTCTGCTG
CAGCAGTGGAGGAATCGGACGACTCCTGGGTGGATAGACTGTCTTCCAAT
CAGAAGCGGCTAGTTGGCATACTGCTGTCTGCGTGTGCAGGCTGTGCGTA
CGGGACGTCCTTTGCGCCGGTAATTTACGCACAGGAACATTACACGGGAG
CCTCACAGAATGGACTGGACTATGTTTTTGCTCACTTCTCTGGTATCTAC
GCTACATCTACTCTGTATTTCATCCTGTACGCCATGTACATGAAGAACAA
ACCTAAAGTGTTCCCCAGAGCCATTCTCCCTACACTTTTATCTGGACTTA
TGTGGGGCATCGCTGAGTCAGGGTGGTTTGTGGCCAACCAGAAGCTTCAA
GAGAGCGTCAGCTTCCCCATAATCTCAACGGGTCCGGGAATGATTGCAGC
ACTTTGGAGTATTTTCTATTTCAAAGAAATCAAGGGAGCCAGGAATCTAT
CGATACTGGCATTGGCGTTTGCAGTCACTGTTGCAGGAGCCTTGCTGACT
GCTTTCTCCTATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000018 | genome | Sc0000018:3796707..3800337 + |
Properties
| Property Name | Value |
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| Transcript id | BL97406_cuf4 |
| Biotype | protein_coding |
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