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transcript:BL97406_cuf4 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97406_cuf4
Unique Nametranscript:BL97406_cuf4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97406_cuf4

>transcript:BL97406_cuf4-protein ID=transcript:BL97406_cuf4-protein|Name=transcript:BL97406_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=264bp
ILKCIGMGMGMLIWGSFNLMMGWFSGRFGWFGLKPQDKFTRPPLDYAGFG
LAVLSVAMFLFVKSEGKRTPSAEEQRLLVSKETLNSRYGTSSAAAVEESD
DSWVDRLSSNQKRLVGILLSACAGCAYGTSFAPVIYAQEHYTGASQNGLD
YVFAHFSGIYATSTLYFILYAMYMKNKPKVFPRAILPTLLSGLMWGIAES
GWFVANQKLQESVSFPIISTGPGMIAALWSIFYFKEIKGARNLSILALAF
AVTVAGALLTAFSY
Run BLAST on NCBI

mRNA from alignment at Sc0000018:3796707..3800337+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97406_cuf4 ID=transcript:BL97406_cuf4|Name=transcript:BL97406_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=3631bp|location=Sequence derived from alignment at Sc0000018:3796707..3800337+ (Branchiostoma lanceolatum)
CGATCCTGAAGTGTATAGGCATGGGCATGGGCATGCTCATCTGGGGGTCC TTCAACCTCATGATGGGCTGGTTCAGCGGGCGGTTCGGCTGGTTCGGACT GAAGCCGCAGGACAAGTTTACCCGCCCGCCGCTGGACTACGCTGGCTTCG GGTTAGCCGTTCTAAGGTGAAAAAAACACAGTTTCAAAACGCTTACCAGG ACACACCAGCTAGGCCGAGCGGAGTTGTCATTTGTCGTATCATATCAGTC AGTCTTTGATAAGGAAAAAATGCAATTATGATAATGCAGGGGCAAAAACA GCAATAATTCAAGACTGAGAATACCACACAGAAAAGAAGATTATCTCTTT CTTTCACGTCCAAAGAACACCACGGCTATCTCGTCAAACTTGCACATGTC CGTCTTTATTTCAGTGTTGCCATGTTTCTATTTGTGAAGAGCGAAGGAAA GAGAACGCCCTCGGCAGAAGAACAGCGCCTGTTGGTCAGCAAGGTAACTA TATTTCTTACACCGTATTGCTTTTGAAGCAAGGATAGAACTCTACCCCAA GACAACGTACGGTGACTATGCTTTTTTTGTCCAAAGAAGATAAACGCTTA TCTCCTTTTGGACAAAAAAGCATAGTCACCGTACGTTTTCTTGGGGTACA GTTTTGTCCGTGATCAAGGGTAGCCCCCTTCGCAGACTTCTAGGAGCATC GGTGTTTTTTTTTGTGGGGGGGGGGGGCTGACTCACGACCCCGGAAAAAT AAACGATGAGGCTCCTAGACGTATGCGAAGGAGGCTAGATCAAGTGATTC ACCCATACTAATCATAATAAACAAAACTACGGTTAACCATAATGTTTGCA TTTATTTTAGGAGACACTCAACAGCCGTTACGGCACCAGTTCTGCTGCAG CAGTGGAGGAATCGGACGACTCCTGGGTGGATAGACTGTCTTCCAATCAG AAGCGGCTAGTGTGAGTTCACAACTAAGTAGTAGTAACGTTTACTTAGTA GTAGTCTACTGTGTTCTGCTGCTGCAGTGGTCACAATTTAGGGTTTTATC AATCAGTCCAAATCTACCAAATTATCTATCTATAATATATATATATATGA CGTTACATGGAATCAACAACAGAATCAAGAACTCTGGTCTTCTTATCAAG AACGCATCAGAAAGATTCAGTGTAAATATCTTGAAGTTAACCATGTGGTA TCTTTACTCCAGTGGCATACTGCTGTCTGCGTGTGCAGGCTGTGCGTACG GGACGTCCTTTGCGCCGGTAATTTACGCACAGGAACATTACACGGGAGCC TCACAGAATGGTATGTGTCACTGTAGACATCTACTCATATATATATAAGT GGATGATGCACTGATGATGTATGGCAATAATTACGTTCACAGTGCATATT AGGAATCATAAAACACTCACACATATACACGCACAAGCCAAAACTTCACT GCCTTGTAGAGAAGTAACCAACACTTCTCATTGTAAATTTTCCTCAATAC GTTTTTCTGTAGGACTGGACTATGTTTTTGCTCACTTCTCTGGTATCTAC GCTACATCTACTCTGTATTTCATCCTGTACGCCATGTACATGAAGAACAA ACCTAAAGTGTTCCCCAGAGCCATTCTCCCTACACTTTTATCTGGACTTA TGTGGGGCATCGCTGAGTCAGGGTGGTTTGTGGCCAACCAGAAGCTTCAA GAGAGCGTCAGCTTCCCCATAATCTCAACGGTATGTTAACATTTCCACAT CTCTTACACACCACAAACTTTTACATTGTGCCACAAGGGATTACCCAAAA CAAAGCCCTACATAAAACGAGAATTTCTGCCCTTTCACACTAAGGTTGAT CCTATTTCATCCATACGTTGATGAAGGTTAAACACCCAGGTAAACAATAC TAACATTCAGTTCAAACTCTACTACTGGAGGAATTACGGATATTACGGTA TTTCATACATAGTGTTGTTCGACATGTATTCTGCAGGGTCCGGGAATGAT TGCAGCACTTTGGAGTATTTTCTATTTCAAAGAAATCAAGGTATGGAACT CTCATCAAAGCAGTTAGTTGCCTGTCTTGTATTGTGCTGAATATTGTTAT CTTTTGTCATACTTCGTATATGTCAGGATAGAGACTCGGATCTGGTAAAT CAGCCATTTTGCCGGTAGAGATCCTGATCGAACTTTCTGTCGACAGAGAC TCCAATCAGGATCTCTGCCACCAGAAACTCTGATTGACATAAAATCTGAT TAGCATCTCTACCGGCAGAATTGGCAATTCCACAGTGTAACACCGGACAC TTTAATCTGAAATGGCAGTAACTTAACAATGCCTAATATATCTTAAAAGT AAAACATACAATTGCACTACTTATACCAGTATCATTTGAATACATGTACT ACTGTGTTACCATAAAACAACTCTCATTCTGGTGTTGCAGGGAGCCAGGA ATCTATCGATACTGGCATTGGCGTTTGCAGTCACTGTTGCAGGAGCCTTG CTGACTGCTTTCTCCTATTGAAAAAAGTTTGCAGCGTGCACACAAATGTC GCCATTTTTCTTAATGTCTATAGAAGCAATATCAGGTCAATTTTACATTT CAAGAAATGTAACATTCATATCTATTCACATAAGTGAGTTTATGTTTTCT ATGTGAACATACATTCAGAAGAATATCTGCTTGGAACAGCTGACCTAAGA ATAGAATAGTTAACATATTCTAGACAATTATTGTCACAGATGATATGATG ACAGATGGTATGATGAAATAAGAAAGCAAGTACATGTATGTTATCATCAT AGATGTTCACATTTTTTAAAGGCACATGTTATCCTATATGTGGTCACAAT TTGTGTTTAACACTTCTCAGTAAAACCTCTTGATAAAATGCATTGTCATC ACAATAAGTTTTGTCCTCCTCACACTAATTGATATACATGTATATATATA CAGATTATGTTCTGTGTAAAATACATGATCATAAAACGGTTAACCTTACT TATGAATAATTTTGTTTTCATTGCATACAAATAACAATGCAATCCTTATC GTAAAATATGGACAGAACAATATACATTATTACTGTTACATTTAACAGCC AATCTATGTTGCTCTCAGTTAATCTCCAAGCAGATGAGTGATCTACCAGT GGCAAGACAGTCTGATCCATGGGCCAGAACAAACTTGTGATACAGACCAG TGTCTTGCCACCGGTAGACCTGCTTGGAGATTAACCCTCAGTACTCAGTC TCTTAAAATGTTGAAGTCCTTCAGCACCTGTACTGTAGATGCAAAAACCT CCTCCTTAGAGCCACTTGCATTAACCACCTGAAGGCTAGGATTCTCCAGC CTCAGATAGGCTTCAACCAACCTTAAAGAGAGGAAAGTCAATAGGTACAA GTTTAAACCAAAACAAAGCAAATATTTCTTACGAATAGTAGTAGTTAGTA GAATGATTTATTCCTCTAAAATGACAACCAAGTTGCAGCCCAAAGGCCAA GTACTGTTATAACATATAAAGATAAAATAAAAGCAGGTGGTGTCCATTCT GCAGCTTTTACTTTACACAATACTACACATACATGTTCTACATAGAGACA AAAGGCTGGACTGGGGTATGGCTACTTTTGG

Coding sequence (CDS) from alignment at Sc0000018:3796707..3800337+

>transcript:BL97406_cuf4 ID=transcript:BL97406_cuf4|Name=transcript:BL97406_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=5565bp|location=Sequence derived from alignment at Sc0000018:3796707..3800337+ (Branchiostoma lanceolatum)
ATCCTGAAGTGTATAGGCATGGGCATGGGCATGCTCATCTGGGGGTCCTT
CAACCTCATGATGGGCTGGTTCAGCGGGCGGTTCGGCTGGTTCGGACTGA
AGCCGCAGGACAAGTTTACCCGCCCGCCGCTGGACTACGCTGGCTTCGGG
TTAGCCGTTCTAAGTGTTGCCATGTTTCTATTTGTGAAGAGCGAAGGAAA
GAGAACGCCCTCGGCAGAAGAACAGCGCCTGTTGGTCAGCAAGGAGACAC
TCAACAGCCGTTACGGCACCAGTTCTGCTGCAGCAGTGGAGGAATCGGAC
GACTCCTGGGTGGATAGACTGTCTTCCAATCAGAAGCGGCTAGTTGGCAT
ACTGCTGTCTGCGTGTGCAGGCTGTGCGTACGGGACGTCCTTTGCGCCGG
TAATTTACGCACAGGAACATTACACGGGAGCCTCACAGAATGGACTGGAC
TATGTTTTTGCTCACTTCTCTGGTATCTACGCTACATCTACTCTGTATTT
CATCCTGTACGCCATGTACATGAAGAACAAACCTAAAGTGTTCCCCAGAG
CCATTCTCCCTACACTTTTATCTGGACTTATGTGGGGCATCGCTGAGTCA
GGGTGGTTTGTGGCCAACCAGAAGCTTCAAGAGAGCGTCAGCTTCCCCAT
AATCTCAACGGGTCCGGGAATGATTGCAGCACTTTGGAGTATTTTCTATT
TCAAAGAAATCAAGGGAGCCAGGAATCTATCGATACTGGCATTGGCGTTT
GCAGTCACTGTTGCAGGAGCCTTGCTGACTGCTTTCTCCTATTGAATCCT
GAAGTGTATAGGCATGGGCATGGGCATGCTCATCTGGGGGTCCTTCAACC
TCATGATGGGCTGGTTCAGCGGGCGGTTCGGCTGGTTCGGACTGAAGCCG
CAGGACAAGTTTACCCGCCCGCCGCTGGACTACGCTGGCTTCGGGTTAGC
CGTTCTAAGTGTTGCCATGTTTCTATTTGTGAAGAGCGAAGGAAAGAGAA
CGCCCTCGGCAGAAGAACAGCGCCTGTTGGTCAGCAAGGAGACACTCAAC
AGCCGTTACGGCACCAGTTCTGCTGCAGCAGTGGAGGAATCGGACGACTC
CTGGGTGGATAGACTGTCTTCCAATCAGAAGCGGCTAGTTGGCATACTGC
TGTCTGCGTGTGCAGGCTGTGCGTACGGGACGTCCTTTGCGCCGGTAATT
TACGCACAGGAACATTACACGGGAGCCTCACAGAATGGACTGGACTATGT
TTTTGCTCACTTCTCTGGTATCTACGCTACATCTACTCTGTATTTCATCC
TGTACGCCATGTACATGAAGAACAAACCTAAAGTGTTCCCCAGAGCCATT
CTCCCTACACTTTTATCTGGACTTATGTGGGGCATCGCTGAGTCAGGGTG
GTTTGTGGCCAACCAGAAGCTTCAAGAGAGCGTCAGCTTCCCCATAATCT
CAACGGGTCCGGGAATGATTGCAGCACTTTGGAGTATTTTCTATTTCAAA
GAAATCAAGGGAGCCAGGAATCTATCGATACTGGCATTGGCGTTTGCAGT
CACTGTTGCAGGAGCCTTGCTGACTGCTTTCTCCTATTGAATCCTGAAGT
GTATAGGCATGGGCATGGGCATGCTCATCTGGGGGTCCTTCAACCTCATG
ATGGGCTGGTTCAGCGGGCGGTTCGGCTGGTTCGGACTGAAGCCGCAGGA
CAAGTTTACCCGCCCGCCGCTGGACTACGCTGGCTTCGGGTTAGCCGTTC
TAAGTGTTGCCATGTTTCTATTTGTGAAGAGCGAAGGAAAGAGAACGCCC
TCGGCAGAAGAACAGCGCCTGTTGGTCAGCAAGGAGACACTCAACAGCCG
TTACGGCACCAGTTCTGCTGCAGCAGTGGAGGAATCGGACGACTCCTGGG
TGGATAGACTGTCTTCCAATCAGAAGCGGCTAGTTGGCATACTGCTGTCT
GCGTGTGCAGGCTGTGCGTACGGGACGTCCTTTGCGCCGGTAATTTACGC
ACAGGAACATTACACGGGAGCCTCACAGAATGGACTGGACTATGTTTTTG
CTCACTTCTCTGGTATCTACGCTACATCTACTCTGTATTTCATCCTGTAC
GCCATGTACATGAAGAACAAACCTAAAGTGTTCCCCAGAGCCATTCTCCC
TACACTTTTATCTGGACTTATGTGGGGCATCGCTGAGTCAGGGTGGTTTG
TGGCCAACCAGAAGCTTCAAGAGAGCGTCAGCTTCCCCATAATCTCAACG
GGTCCGGGAATGATTGCAGCACTTTGGAGTATTTTCTATTTCAAAGAAAT
CAAGGGAGCCAGGAATCTATCGATACTGGCATTGGCGTTTGCAGTCACTG
TTGCAGGAGCCTTGCTGACTGCTTTCTCCTATTGAATCCTGAAGTGTATA
GGCATGGGCATGGGCATGCTCATCTGGGGGTCCTTCAACCTCATGATGGG
CTGGTTCAGCGGGCGGTTCGGCTGGTTCGGACTGAAGCCGCAGGACAAGT
TTACCCGCCCGCCGCTGGACTACGCTGGCTTCGGGTTAGCCGTTCTAAGT
GTTGCCATGTTTCTATTTGTGAAGAGCGAAGGAAAGAGAACGCCCTCGGC
AGAAGAACAGCGCCTGTTGGTCAGCAAGGAGACACTCAACAGCCGTTACG
GCACCAGTTCTGCTGCAGCAGTGGAGGAATCGGACGACTCCTGGGTGGAT
AGACTGTCTTCCAATCAGAAGCGGCTAGTTGGCATACTGCTGTCTGCGTG
TGCAGGCTGTGCGTACGGGACGTCCTTTGCGCCGGTAATTTACGCACAGG
AACATTACACGGGAGCCTCACAGAATGGACTGGACTATGTTTTTGCTCAC
TTCTCTGGTATCTACGCTACATCTACTCTGTATTTCATCCTGTACGCCAT
GTACATGAAGAACAAACCTAAAGTGTTCCCCAGAGCCATTCTCCCTACAC
TTTTATCTGGACTTATGTGGGGCATCGCTGAGTCAGGGTGGTTTGTGGCC
AACCAGAAGCTTCAAGAGAGCGTCAGCTTCCCCATAATCTCAACGGGTCC
GGGAATGATTGCAGCACTTTGGAGTATTTTCTATTTCAAAGAAATCAAGG
GAGCCAGGAATCTATCGATACTGGCATTGGCGTTTGCAGTCACTGTTGCA
GGAGCCTTGCTGACTGCTTTCTCCTATTGAATCCTGAAGTGTATAGGCAT
GGGCATGGGCATGCTCATCTGGGGGTCCTTCAACCTCATGATGGGCTGGT
TCAGCGGGCGGTTCGGCTGGTTCGGACTGAAGCCGCAGGACAAGTTTACC
CGCCCGCCGCTGGACTACGCTGGCTTCGGGTTAGCCGTTCTAAGTGTTGC
CATGTTTCTATTTGTGAAGAGCGAAGGAAAGAGAACGCCCTCGGCAGAAG
AACAGCGCCTGTTGGTCAGCAAGGAGACACTCAACAGCCGTTACGGCACC
AGTTCTGCTGCAGCAGTGGAGGAATCGGACGACTCCTGGGTGGATAGACT
GTCTTCCAATCAGAAGCGGCTAGTTGGCATACTGCTGTCTGCGTGTGCAG
GCTGTGCGTACGGGACGTCCTTTGCGCCGGTAATTTACGCACAGGAACAT
TACACGGGAGCCTCACAGAATGGACTGGACTATGTTTTTGCTCACTTCTC
TGGTATCTACGCTACATCTACTCTGTATTTCATCCTGTACGCCATGTACA
TGAAGAACAAACCTAAAGTGTTCCCCAGAGCCATTCTCCCTACACTTTTA
TCTGGACTTATGTGGGGCATCGCTGAGTCAGGGTGGTTTGTGGCCAACCA
GAAGCTTCAAGAGAGCGTCAGCTTCCCCATAATCTCAACGGGTCCGGGAA
TGATTGCAGCACTTTGGAGTATTTTCTATTTCAAAGAAATCAAGGGAGCC
AGGAATCTATCGATACTGGCATTGGCGTTTGCAGTCACTGTTGCAGGAGC
CTTGCTGACTGCTTTCTCCTATTGAATCCTGAAGTGTATAGGCATGGGCA
TGGGCATGCTCATCTGGGGGTCCTTCAACCTCATGATGGGCTGGTTCAGC
GGGCGGTTCGGCTGGTTCGGACTGAAGCCGCAGGACAAGTTTACCCGCCC
GCCGCTGGACTACGCTGGCTTCGGGTTAGCCGTTCTAAGTGTTGCCATGT
TTCTATTTGTGAAGAGCGAAGGAAAGAGAACGCCCTCGGCAGAAGAACAG
CGCCTGTTGGTCAGCAAGGAGACACTCAACAGCCGTTACGGCACCAGTTC
TGCTGCAGCAGTGGAGGAATCGGACGACTCCTGGGTGGATAGACTGTCTT
CCAATCAGAAGCGGCTAGTTGGCATACTGCTGTCTGCGTGTGCAGGCTGT
GCGTACGGGACGTCCTTTGCGCCGGTAATTTACGCACAGGAACATTACAC
GGGAGCCTCACAGAATGGACTGGACTATGTTTTTGCTCACTTCTCTGGTA
TCTACGCTACATCTACTCTGTATTTCATCCTGTACGCCATGTACATGAAG
AACAAACCTAAAGTGTTCCCCAGAGCCATTCTCCCTACACTTTTATCTGG
ACTTATGTGGGGCATCGCTGAGTCAGGGTGGTTTGTGGCCAACCAGAAGC
TTCAAGAGAGCGTCAGCTTCCCCATAATCTCAACGGGTCCGGGAATGATT
GCAGCACTTTGGAGTATTTTCTATTTCAAAGAAATCAAGGGAGCCAGGAA
TCTATCGATACTGGCATTGGCGTTTGCAGTCACTGTTGCAGGAGCCTTGC
TGACTGCTTTCTCCTATTGAATCCTGAAGTGTATAGGCATGGGCATGGGC
ATGCTCATCTGGGGGTCCTTCAACCTCATGATGGGCTGGTTCAGCGGGCG
GTTCGGCTGGTTCGGACTGAAGCCGCAGGACAAGTTTACCCGCCCGCCGC
TGGACTACGCTGGCTTCGGGTTAGCCGTTCTAAGTGTTGCCATGTTTCTA
TTTGTGAAGAGCGAAGGAAAGAGAACGCCCTCGGCAGAAGAACAGCGCCT
GTTGGTCAGCAAGGAGACACTCAACAGCCGTTACGGCACCAGTTCTGCTG
CAGCAGTGGAGGAATCGGACGACTCCTGGGTGGATAGACTGTCTTCCAAT
CAGAAGCGGCTAGTTGGCATACTGCTGTCTGCGTGTGCAGGCTGTGCGTA
CGGGACGTCCTTTGCGCCGGTAATTTACGCACAGGAACATTACACGGGAG
CCTCACAGAATGGACTGGACTATGTTTTTGCTCACTTCTCTGGTATCTAC
GCTACATCTACTCTGTATTTCATCCTGTACGCCATGTACATGAAGAACAA
ACCTAAAGTGTTCCCCAGAGCCATTCTCCCTACACTTTTATCTGGACTTA
TGTGGGGCATCGCTGAGTCAGGGTGGTTTGTGGCCAACCAGAAGCTTCAA
GAGAGCGTCAGCTTCCCCATAATCTCAACGGGTCCGGGAATGATTGCAGC
ACTTTGGAGTATTTTCTATTTCAAAGAAATCAAGGGAGCCAGGAATCTAT
CGATACTGGCATTGGCGTTTGCAGTCACTGTTGCAGGAGCCTTGCTGACT
GCTTTCTCCTATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97406gene:BL97406Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97406_cuf4transcript:BL97406_cuf4-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97406_cuf4-E1BL97406_cuf4-E1-1564476830-140322Branchiostoma lanceolatumexon
BL97406_cuf4-E2BL97406_cuf4-E2-1564476830-140324Branchiostoma lanceolatumexon
BL97406_cuf4-E3BL97406_cuf4-E3-1564476830-140326Branchiostoma lanceolatumexon
BL97406_cuf4-E4BL97406_cuf4-E4-1564476830-140328Branchiostoma lanceolatumexon
BL97406_cuf4-E5BL97406_cuf4-E5-1564476830-140330Branchiostoma lanceolatumexon
BL97406_cuf4-E6BL97406_cuf4-E6-1564476830-140332Branchiostoma lanceolatumexon
BL97406_cuf4-E7BL97406_cuf4-E7-1564476830-140335Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000018genomeSc0000018:3796707..3800337 +
Properties
Property NameValue
Transcript idBL97406_cuf4
Biotypeprotein_coding