transcript:BL97405_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97405_cuf3
Unique Nametranscript:BL97405_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97405_cuf3

>transcript:BL97405_cuf3-protein ID=transcript:BL97405_cuf3-protein|Name=transcript:BL97405_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=138bp
AKSHYQAELACEADGGHLVNIKTESLHNFILDMVREVNPYRDQDYWIGLN
DKRTYNVWTWSDGIPLSGCGFSKWAPGEPNDGAGTGQDCGQLWAAVGLRW
DDDFCSIRKRFICQIGPGENDACSGDGCRVANGGCAQI
Run BLAST on NCBI

mRNA from alignment at Sc0000018:2246280..2248717-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97405_cuf3 ID=transcript:BL97405_cuf3|Name=transcript:BL97405_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=2438bp|location=Sequence derived from alignment at Sc0000018:2246280..2248717- (Branchiostoma lanceolatum)
AGCCAAGTCCCACTACCAGGCGGAGCTGGCGTGCGAAGCAGACGGTGGAC ATCTCGTGAACATCAAGACAGAATCTCTTCACAACTTCATCCTCGACATG GTTCGGGAAGTCAATCCGTATCGTGATCAAGACTACTGGATCGGATTGAA TGACAAGAGGGTAAGTTACGAAAAACAACCTGGCACTTTATGCATGAACA CTATATTCTTTCAGCACACGAAAATCCAGACTAGCCGCGAAAGTCACCCG ATGCCTTTGACCTTCTTTATTATCCTGGTATTTTAGCAAGGGGTTAAAGG TCACTGGAAGTTGGTACCGTCCTCTGTTGTAGTTGAGTGTATGTTGCTAT ACTTCCATCTACTAATGTATACATGAATGTCAGGAACATTTTTGTGATAT TTGGTCTAATTTCCAGAGTTTGGTCACCACTTTTTTTCTATTATTTTCCG GTTTCTAGACGTACAACGTGTGGACGTGGTCTGATGGAATTCCGCTGAGC GGTTGTGGGTTCAGTAAGTGGGCTCCCGGAGAACCGAACGACGGGGCCGG CACGGGTCAGGACTGCGGGCAGCTCTGGGCAGCTGTCGGGCTCAGATGGG ACGACGACTTCTGTTCCATTCGCAAGAGATTCATCTGCCAAATAGGTGAT CTGTAATCTCCAAGCAGAGGTTTCGATCGGGGGGCTAGTAGTGGCCGGGA TTTTTAACGCTGCCCTCAGCCACCCTCCTTTATCAGCGCTGAAACCCACT CGGAAAATGTTCGGCAAACTCTCCCGGTCTCAGCCCTGATCTTTTGAACG GAGATTTTGGCTTCAGTAGGGGCGTCACTGACAGTTACTCATAACTGATT AATGAGCTAGCCTTATTCGGCACAAACAGTTGTTGGTTGCTCATGAATGA TTAAGTAGCGATGTAAGACGTAATCTGATTGGTTGATAGCTTACCAGCGT CCTTTGCGGCTTTGCTCAAAATGAGCATTAGCAAACCCTCTGATTGGCTG AAAGCTGTTTGGTGGCGACGTCGCCAGAAGCGTGTTCAGGGGCTCGGAAG GCAGGGCCGCTATGGAAGGTAACGAACATATCGGGTCTGCTGGGAGGATG CCCTCAGCGACAGAAATGATAGCCCCGCCCTGATGCGTTCTGTCGAAGAG GTGAAGGGAGAGCAACGTTAAAAATCCCGGCCACTACTAGCCCCTCCTCC CCCATCGAAACCTCTGCTTGGGGAATAGGTAATCTGGCGTTTTGGGCGAC GCCTCAGGGGCGAGCCTAGTAGTATATATATTGTGTGCAGTTTACAAGAA TTCTAGGAATTGCACAGGAATGTGAAAGTCTACGGGACGATAACCCAAGA ATGCTTCAATGGATTGCCTTCATATTTGGTAGGTGGGTAGGTCTTTATGA GACCTTGAAATGATTATATTTTGGGCCTCTTAGCAACACTTTATGACACT GCAGAGGAAATATGAGGAAACGGTACAATATCCTTTTTTGTGAAGACAAT ACTTTCAATCATTGGACAACTTGTGTCATTTGGGTAGAGAGAGTGAAAAA TTGATATGATTTACGCAAGTGAGGTCCTTATTTGCACGTGGGCTAAAAAA ATATTAACAGGGGCCACCGTTGCCATGGCAACGTCTTTTTATGTTGCCAA TATTGTTTATACGAATGTTGATGTAAATTTGTTGAACGTCTAGTAGATCG TATCTGAATTCTATTTATTTTTGTGTCGTCAGGTCCAGGTGAAAATGACG CGTGCTCTGGAGGTAACAAAAGTTTATTACAAATACATGACCGAGGGCTA ATTGCAAGTACAAACAGCAAATATGATAATGATAAATACAACGATATTGA GGGATACATCCGATATCATGCTACATTCTAGAATCTACATGGTACCAGTT TTCTTGGGGTTGACTTTTGAGGCAGTGGAAGTCGAATTTACCCACTTCGT TTGTCATTTTTTGGTTCTTTGATTTTAGTAACAGAGTTGTGATGTCACCA GTATATTTTTTTCCCTTTAACTGGGCATTGTTGGCAAAGTACGCTTAGAA ACGCCTCTTTTAAGAAACATCTTCCATATCTATCTGACAACCAAGCATCT AACATGAAGCAAAATGCAGAGAACAATACATTGATATGTTGATAGAGGTT AGACATCCAGGTAATAAGATACGCCAAAGAACAGTTACTCAAGCAACTAG ATAACATTTTGAAACAGTCAGACGCTTTAGACAGCATCCACTGTCTCTCC TCATCAGTGACTAATGGCAGTTGCAGTTCTTTCCACTAGTCACTGACGAT AGCGGGTGTTTAAAATGTTATCAAGTTGCGTGAGTAACTGTTTTAGAAAT ACCCTAACATGTCACATATACATGTATTCTATGATTTCGGTTTACTTCAG ACGGGTGTCGCGTTGCAAATGGTGGCTGTGCTCAGATC

Coding sequence (CDS) from alignment at Sc0000018:2246280..2248717-

>transcript:BL97405_cuf3 ID=transcript:BL97405_cuf3|Name=transcript:BL97405_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1656bp|location=Sequence derived from alignment at Sc0000018:2246280..2248717- (Branchiostoma lanceolatum)
GCCAAGTCCCACTACCAGGCGGAGCTGGCGTGCGAAGCAGACGGTGGACA
TCTCGTGAACATCAAGACAGAATCTCTTCACAACTTCATCCTCGACATGG
TTCGGGAAGTCAATCCGTATCGTGATCAAGACTACTGGATCGGATTGAAT
GACAAGAGGACGTACAACGTGTGGACGTGGTCTGATGGAATTCCGCTGAG
CGGTTGTGGGTTCAGTAAGTGGGCTCCCGGAGAACCGAACGACGGGGCCG
GCACGGGTCAGGACTGCGGGCAGCTCTGGGCAGCTGTCGGGCTCAGATGG
GACGACGACTTCTGTTCCATTCGCAAGAGATTCATCTGCCAAATAGGTCC
AGGTGAAAATGACGCGTGCTCTGGAGACGGGTGTCGCGTTGCAAATGGTG
GCTGTGCTCAGATCGCCAAGTCCCACTACCAGGCGGAGCTGGCGTGCGAA
GCAGACGGTGGACATCTCGTGAACATCAAGACAGAATCTCTTCACAACTT
CATCCTCGACATGGTTCGGGAAGTCAATCCGTATCGTGATCAAGACTACT
GGATCGGATTGAATGACAAGAGGACGTACAACGTGTGGACGTGGTCTGAT
GGAATTCCGCTGAGCGGTTGTGGGTTCAGTAAGTGGGCTCCCGGAGAACC
GAACGACGGGGCCGGCACGGGTCAGGACTGCGGGCAGCTCTGGGCAGCTG
TCGGGCTCAGATGGGACGACGACTTCTGTTCCATTCGCAAGAGATTCATC
TGCCAAATAGGTCCAGGTGAAAATGACGCGTGCTCTGGAGACGGGTGTCG
CGTTGCAAATGGTGGCTGTGCTCAGATCGCCAAGTCCCACTACCAGGCGG
AGCTGGCGTGCGAAGCAGACGGTGGACATCTCGTGAACATCAAGACAGAA
TCTCTTCACAACTTCATCCTCGACATGGTTCGGGAAGTCAATCCGTATCG
TGATCAAGACTACTGGATCGGATTGAATGACAAGAGGACGTACAACGTGT
GGACGTGGTCTGATGGAATTCCGCTGAGCGGTTGTGGGTTCAGTAAGTGG
GCTCCCGGAGAACCGAACGACGGGGCCGGCACGGGTCAGGACTGCGGGCA
GCTCTGGGCAGCTGTCGGGCTCAGATGGGACGACGACTTCTGTTCCATTC
GCAAGAGATTCATCTGCCAAATAGGTCCAGGTGAAAATGACGCGTGCTCT
GGAGACGGGTGTCGCGTTGCAAATGGTGGCTGTGCTCAGATCGCCAAGTC
CCACTACCAGGCGGAGCTGGCGTGCGAAGCAGACGGTGGACATCTCGTGA
ACATCAAGACAGAATCTCTTCACAACTTCATCCTCGACATGGTTCGGGAA
GTCAATCCGTATCGTGATCAAGACTACTGGATCGGATTGAATGACAAGAG
GACGTACAACGTGTGGACGTGGTCTGATGGAATTCCGCTGAGCGGTTGTG
GGTTCAGTAAGTGGGCTCCCGGAGAACCGAACGACGGGGCCGGCACGGGT
CAGGACTGCGGGCAGCTCTGGGCAGCTGTCGGGCTCAGATGGGACGACGA
CTTCTGTTCCATTCGCAAGAGATTCATCTGCCAAATAGGTCCAGGTGAAA
ATGACGCGTGCTCTGGAGACGGGTGTCGCGTTGCAAATGGTGGCTGTGCT
CAGATC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97405gene:BL97405Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97405_cuf3transcript:BL97405_cuf3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97405_cuf3-E1BL97405_cuf3-E1-1564476830-138595Branchiostoma lanceolatumexon
BL97405_cuf3-E2BL97405_cuf3-E2-1564476830-138592Branchiostoma lanceolatumexon
BL97405_cuf3-E3BL97405_cuf3-E3-1564476830-138590Branchiostoma lanceolatumexon
BL97405_cuf3-E4BL97405_cuf3-E4-1564476830-138588Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000018genomeSc0000018:2246280..2248717 -
Properties
Property NameValue
Transcript idBL97405_cuf3
Biotypeprotein_coding