Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

transcript:BL97401_cuf25 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97401_cuf25
Unique Nametranscript:BL97401_cuf25
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97401_cuf25

>transcript:BL97401_cuf25-protein ID=transcript:BL97401_cuf25-protein|Name=transcript:BL97401_cuf25|organism=Branchiostoma lanceolatum|type=polypeptide|length=133bp
REHTWGVTMRFYVVCLTLLLGVLTVNSVPGVHNANRVRRYLSEDELLREL
SALDEALKDGLENDKRDEELEGRSKSGSDGSGGKSGSGGKSGSGGKSGHG
KDHGSHGSHGSHGSHGGHGSHGKDHSGHGSHGK
Run BLAST on NCBI

mRNA from alignment at Sc0000260:163856..171162-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97401_cuf25 ID=transcript:BL97401_cuf25|Name=transcript:BL97401_cuf25|organism=Branchiostoma lanceolatum|type=mRNA|length=7307bp|location=Sequence derived from alignment at Sc0000260:163856..171162- (Branchiostoma lanceolatum)
CGGGAACACACTTGGGGCGTCACCATGAGGTTCTACGTCGTGTGTCTGAC TCTACTGCTGGGGGTGCTGACCGTCAACTCAGTCCCAGGTAAGAAATACT TCGCTCAAGTTCGCTCAAGTTCATCTAAAAGATGATAGATGATATTTCTT GGTCCGTGTGGACATACCCGTAGTGGAAATAGAGGCGTAGGGGCTAGGTC CGATTCGTCTCACGATCGAAAACTAATGGCACTTTTGGTATAGTCGTGCA TGTCTCCTGCACAACTTAGCTACCTTGTGACGAAAAATGCTGTCTTTGAT CATTGTTGGGGCTGCATCCGTCACAGCCAGCTTGAACTTGACCCCTACGA AATCCAAAGCTTGTGTGTTACGCCGAATGGCGGTTCTACCGGCTATGTAG ATACAGATGTGTCAAAATCTTACGACGGCCTTCGACAAATGTGACCGAGG ATAACGGAAGAAATACTATAATTCGCGATAGTTTCTTAGGTTTATTTCCG ACCAAATACGAGTTTTTGTCGTCCTTAGATTGGACAGATGTACTGTAAAA ACAAGGATTTGATTCTTCTTTATCTTAGATTGTGTCATGTTAGCTTACTT GCAGTGTTGAACCCGAAACAAACATATTTTGATTTGTTAGTAAAAATAAA AGTATTTTCGTGTCAGCGCTTTAAAAAAAATACTCTTCAAGCAGAGTTTT GNCAGTAAACCGTCCCATGGCGCAGTGGCAGGGTGTTTGGCCCCAGAACC CAGAGGTACTGAGTTCGAATCCGGGGTTCCCTGATTGTCCCGTTGACGTT GTGCCCTTAGGAGAGGCACTTTTCCTTACTTCACTCACTTGTATATGAGT ACCTAGCTTCGGTTAGGGACGTCCTTCGGATAGGACGTTAAATGGAGGAC CCGTGTTTGAGGAGAGCCACACCTCGAGCACGTTAAAGAACCCGCACGTT AAAGAACATCGCACTTATCGAAAAGAGTAGGGGTCCTTCCCGGTGGGAGT GGTTCAAAACTTACAGTCCTATGGTCGCACATGGGTTAATTGTCGTATTG AGGTCACCTGCGCGCCGAATGGCAGTCGCTACAGACCCTTGCGATCTAGC ACCGCCAAATGTGCGCTCCTCGCAATTCAGCTTCTGGCTGCGAAGAGAGA GAGTAGTTGGCCCACCCAGTAACAAATGACATAACTCACCAGGTTTGTAC TGAAGAGTACAAGCTGTGTATACGGACAGATTTATTTGATCCACTCATAC CGAAAAGTACCACTACTATTTTCGATAAGTCTGGTGGGTGGGATATTGAG TTTGACCCTGTTTGTCGACCTCTGACATGTGAAAGTAAATACTGGAAATG TTAAGATTGTCTGAGAGAGTTAGCAAAGTTCTTGATTAGGTCAAGACGTT CTTGACTATAGAAAAGGTAGGTCGGTTCTGTCTAGCCTCTACAAGGCTCC ACAGGTCGCTGGAAAAATAGTAGAAATTTGCCAAATATACAGATAACATG CCCGAGGAGTTAGTTGTCCAGGGAGTACAGTTTGCGACCTGGTCAGCTAA CTCCTCTGGCATGTTATCTGTCTATTTGGCAAATTTCTACTTATTTTTCC AGCTACCTGTGGAGCCTGGTAGAGGATAGGTTCTGTCGAAGACTCGCTAC AACTACTACAGTAACTATTCTAAGTTGACTTTGATCAGCTGTCCACCAGG AGAGATTAACTGATTTTATCCCCTGTGTCGTATCTTGATATCATGAGGTA GATATAAAGGTAGTCCCATAGCCATTTTGAGGCCGTAGGGGCAGTAGTTA GTTATCTACTGTGTCAAGGGACTGTATTGGAAGGTGGAGCACAACCCTCT AATCCCACCACCTTTTACCGCCCAAACCGAAGTCAGGTACCCGTTTATAT ACCTGGATGGAGTGAGGAAAGTCGTGTTAAGATCGTTAAAGTCGTGCTAT TGATGTCTGTAAGGATCAAACAATAGTGCTCACGGTCAGAAAATCGATTT GGCTCATATTTTGCACAGAGATAGTACTTGGCCAAAAACAAGTTTTTGGG CCATTTTGACAGATTTTTGTACGGTGACAACATGGAAATTGGCAAAGTTT AGAGCAGACTCACTGCCAAATTCTATAACGTAGCGGAAAACACAAAAGGG CAGTTTTAGACCGATGCTTAAACTTTTAGAAAAATGGTGTGAAGTTGATT TAAATGAATATTTGAGTACTTGGCCATCCTCAAAACAATACGATGTTTTA AGGCTACAAAAAACTTAGATTTTTGCCTAACTTTGAGACGTTATAAGTAT AATATCAACGCAGATATGAGGGACCAAGCCTAAGCTCTGTCTTTTTTTGA ATAAGTTTACATTGATTTGGCAATATTCCGACGAAAATGCAAGAATGGTT GTTTACATTTCAAGCTGAAATTATAAAATGGTCGAGGAAAGAAATTAAAG AGAATGAACTGCTCAGTTAAATTTAATTCGACGTGTAAAATATCATTTAT ACGTTGATTTTGGTAATCTAATAAATTGCGTATTGTGAAATTTTCGTCAA ATTTGTGCATCAGTAGATATGTTTTCGGCTCGGATAAATTGCAATCATTA CGCACATTTAGGTCCGGTTTGTTTTTTTGCTAGCTTGTTTGTTTGTTGGT CTGTTTGTTTGTTGGTTGGTTAGTTGATTCATTGTTGGTTCGTTTTTTGA TTGGTGGGTCAATTACAAACATGCATGGTGGTATTTTGTGGGTTTTAATC GTTACTTCGCGTTGTGAAGTGATTTACATACTATGCTCGATTTTATATGT ATTGTGTGCTGAACGAAACACAGAACACATAATTCTTATGTGTGTACTTC TCACGCTCATTCCGTTCCATCGCCTGACTTCACTAGTCTCTACCAGACTA ACCGCGCCGGCTATAGGGAGAACATTTGCCGGGGGACTTTGGCCATGTAG GGTTTCATTCGCAGCCGCTAGGGTTGCATTATTGGACCCTATCTCCATAG CCGACTCCCTTCATACAGTTGACTCTATTTGGCCAATTTTTACTATTTTC CCAGCGACCCGCGGAGGCTGGTAGAGCCTATGACTTTACGAGCTTAGTAA CGCATAGATACTTTGCAGACAACTAAACGTACCTGCTCATGTGCAAGGGG TGTTAATAATCTACTTAAGGCGACGCCCACTTAAGCACTCCCTTCATAGG TCATCATAGTGCAGACTCGATACTGTACATCTTGAAATATTTGCGGTGGT TTGATTTGTATTTTTTCGGTGATCTCTCTTCTAAAAATTCATGACACCAA GATTAGCGTGTCCATCGTATCATTATTGTATTCTGTATTATAGTATCCCA ATCGTAAACTTAACACGCCACAACAATCTCCCTTTAAAGGTAGTGTGCGT AGTCCAGTGGTTAGCGATCTTGCCTCTGGAACTAGAAGCCCCGGGCTCGA TCCCGGCTGTGTCGCTCACCCGACATGCACGCTACCGGTAAGAGTCGCAG TCCTTAGGACGGGACGTTAGGCCGTGGTCCACTGTTCATTGTACTTGTCG AAAAGAGCTAGGGGAATTTCCCCGGTACAATGAACCTGTGAATACTGTAC ATAGCGTCTGTTTTCTCTGTCACGTGGAATATTAGCTCATCTGTTCCTTG AGTTCATTTGAGCCAAACTGGTTCGAGATGACTTTCCTTTCCTTTCCTTG CCCTCCTACCTCGAAATACAGTCCCGTGAAACATAGTGGCTGTACGGTAA AATTCAGGGCTGTCGTTCTCCAGATGGTGAATTATCATACAGTAACTATA TACAAGTTTCATGTTTAAAGCTTGTTACGGTGTTATTGTGGTTAGGCTTA TTATCTCCATGAAAAATGGAGATATTGTTTTTAGCGTGTCTGTGCGTGCG TGCGTGTGTGTGTCTGTCTGTCTGTCTGCGCGTTTGTGTTTCTAGACTAT TGTAGTCTGCATAACTCAAGAACCTCAATTATGATATTCATTACAATGAT ATTTGGTATGTGGGTAGGTGTTGTGGAGACAAAGGTCTAGGTTGATTTTG GGCCCCGTGGTATGTGATCTTGATACTGCAAGACCTGGACGAGCTTTTGA CCTGGACGAGCTATGGTCTTTTTTGGTGGCAGATAGCTTGTGATGTAAGG AAGAAGTGGTGTAGATTTGGGCCCCTTTGTTGACTTTGAGTTAAAAGCTG GTGGGTTCGAATGCCTGACACCTATTTCATGATGCCACTCACATGAACAC ATCTACATCTATCTTGGTGTTATTGCTATTTCCTCACTAGACGCAGGTGA AAATGAGTACGTATACCTAGCTCATGTTGGGGACGTATTCTCGGATAGGA CGTAACGTTTTAAGTCCGGAGGTCCATTGTTTGAGGAGAGCCACACACTT GAAATATCCAACCACTCGAAAAGAGTAGGGGTACGTCCTTCCCGGTTTGA GTTGATCCAACCTTACATTCTGGTCTTTCGCAGCTTGCACCTTATGAAAC TTGCATGCTACGGTTTTCTGGCTATGCTAAAGAACGAGAGCTGTGGCCCA AACTAGGACATAGGCTATTGCTGTTTCACGGGTCACTACAGAAGGGGGCT AGTCCACAAGGAGAGGAGAGTGTTCAACCCCCCGAACTGTTTCTCACTTA GAGCTAAGCAGACAAAGCAGTATGTACCATTTTAAAGTCTTCGGTATGAC CTGGCCGAGGTGTGGACTCGTGACCTGCCGAATACAAGGCGAACACTCTA CCATTTTACCTGTCAAGTACACCTGTCTGTTGTCTTTCGTGACTTTTTTT TTTACAATGAGGGAAAGAACACATCGTGTGGCATCGTTTAGCGCAATCGG TAGAGTGTTTCGCCCAGAACCGAGAGGTCCCGGGTTCGAAACCCCGATAT GCCCCGATGTTGTGCCCTTGGCAAAGGCACTTTACACGACTTTCCTCACT CCACCCAGGGGTGAATGGGTACCTGACTTCGGTTGGGGAAGGTCTTATTG AGGTCACCTGCTTGCGCCGAATGGCAGCCGCCCAGACCCTTGCGACAGTT CCACAAAGTGCAAGTGTGTAGCAAATATGCATCTGTTCTGTATTATATGA TTGTAAACCCTACAGCAATTCAGCACTGGCTGCCATTGCAGTGGTAATTT CTTACCAATAAACCAAGACCAATAATCCATTATTATAACACAGTAAATGT TTATTGTACAAGTAATGCGAAGGGGGGGGGGGGTCCCCGTACGTTTGTGC TTTAACAGAAAACAGCAAAACGTTAAACCGTCCATTTAAAACAATTGTGC AAACTTGGACAGTTTCCAATTCTTCCAGGCTATAATACGATATCATGTAA TACTAATGTATCAAAATAAAGGATACACCCACAGACCTATTTTCTTCTGT TCATAATTTGCGACTGAACAATGTTATTAATATGGAAAGCAGGCTATCCA TGTCATATTTTGGAAAAGTGTACTGAACGATCAAAAGACCCACCCTGATG TCGGGTCTCTCCTTGAAGAGGAGTAACTCTGAATAATGGAAAAGCGTTCA TGTGTAAAGCAAATGGGAAGCTAAAAAAAGTTGTATATTCAATTCTATTG CTATTACATGCTATTGTTCGTTTTACCGTTCACAGGTGTGCACAATGCTA ACCGTGTGCGACGTTATCTGTCTGAAGATGAGCTACTCAGGGAGCTATCT GCGCTGGATGAGGCCCTGAAGGACGGACTAGAAAACGACAAAAGGGATGA AGGTATATGATCATTTCTTTTCTGTCTGTGTTACACTTATCCTGAGCCCC CCCCCCCTCTTAAAGGACACACAAGCAATATTCGAGCCCAAAAATCGGAT TTTGAAAGTCAATGTATTTTGTCATTTCTATACATGATAAGTTCAAACGA CACTATCACAATGTATAGCGACGTCCATGATGCAAAAATACGGCATCGTT GTGATGTGAGATCTCGCTGAAAATCGTCGCCGGGGTTTTTGTAGGCTTGC GAAACTAAGGGGACTATCCTACGGCACGTTTTGCACAGTTTTAGAATGCT CAGAGTATGAAGTTATTACGGAAATATGCTAAACAGAGATGGTAAATGTC AACAGCAAAACTATTTCAGCATTTTTTTTATTTCCATTTTTTTGCCCTAA TATTGCTTTGGTTGCCTTTCACTGCCGTTAATGATGTCATCTTTGTCCAA CTTGACTTCCATCTGGGTAAAACGTCACAACTTTTACTCGACATAACAAA ACTGATTAATAAGAGAGCCTTTTGTTCATAGTTTTAGAATATTTCTTTGA CATTTTCTGTCAATTTCCTCCAAGCGCCATATTGTGTAGGATAAACATTG AACGGTTTGTGTTTTGTATATTTGATACATCTGCTATGGCTTACGACATA TTCTAGTTGAAGTTCGCTGTCGTTACAGCTGTTTGCTATTATTTTGTTGG TTGCTTGGTTGGTTGGTTGGTTGGTTGGTAGGTTGGTTGGTTGGTAGGTT GGTTGGTTGGTTGGTTGGTGGNGGTTGGTAGGTTAGTTGGTTGGTTGGTT GGTTGGTTGTTGGTTGGTTGGTTGGTTGGTCGGATGTTGGTCGATTGAAA AAGTATAATCTATGTAAATCCATGGGTGTCTTTGTTTCTCGGAAGTGTGT ATATCTAGATCCAAGTTAAACACTTTTGGCCATTCAGTTTCGTATATCCT AAGCATTGTTTGTGACTTAAAATGTTGGAAATTTAAGTCCCCGTTCTTGA CTTCGGGGATATGACGAGGTTACTGACTCTCAATTCTCGGGACATGTTTG GAACATTGACTTGTACAGGGTGGCCTGTAGCGATAACAGTTTGGCAAAGG CAATCTCAGCAGTAACTATGAGGCATTTTTGAGCACGTTTGCCTCTGCAC GCAGACATGTGTTCTTAATCACTTTGGGCATAACAGGACCATTGATCAAT ATACAGGAAACTTGTACAAGTATTGGCGGGACGATTTGACGAAGGTATTT ATTTTCGTTTCATGTCCAAAAGCATGATTTGGCGGAAGTCTTCTAGCTCT GGCGAGAAGTAGATTTAGCCCTAAAACCCTCATTGCATTGTGCTCTGTGG CTATTTTCCCCAGAACTTGAAGGGAGAAGCAAAAGCGGCAGCGATGGCAG CGGCGGCAAAAGTGGCAGCGGCGGCAAAAGTGGCAGCGGCGGTAAAAGTG GCCACGGCAAGGATCACGGCAGCCACGGCAGCCACGGCAGCCACGGCAGC CACGGCGGCCACGGCAGCCACGGCAAGGACCACAGCGGCCACGGCAGCCA CGGCAAG

Coding sequence (CDS) from alignment at Sc0000260:163856..171162-

>transcript:BL97401_cuf25 ID=transcript:BL97401_cuf25|Name=transcript:BL97401_cuf25|organism=Branchiostoma lanceolatum|type=CDS|length=1197bp|location=Sequence derived from alignment at Sc0000260:163856..171162- (Branchiostoma lanceolatum)
CGGGAACACACTTGGGGCGTCACCATGAGGTTCTACGTCGTGTGTCTGAC
TCTACTGCTGGGGGTGCTGACCGTCAACTCAGTCCCAGGTGTGCACAATG
CTAACCGTGTGCGACGTTATCTGTCTGAAGATGAGCTACTCAGGGAGCTA
TCTGCGCTGGATGAGGCCCTGAAGGACGGACTAGAAAACGACAAAAGGGA
TGAAGAACTTGAAGGGAGAAGCAAAAGCGGCAGCGATGGCAGCGGCGGCA
AAAGTGGCAGCGGCGGCAAAAGTGGCAGCGGCGGTAAAAGTGGCCACGGC
AAGGATCACGGCAGCCACGGCAGCCACGGCAGCCACGGCAGCCACGGCGG
CCACGGCAGCCACGGCAAGGACCACAGCGGCCACGGCAGCCACGGCAAGC
GGGAACACACTTGGGGCGTCACCATGAGGTTCTACGTCGTGTGTCTGACT
CTACTGCTGGGGGTGCTGACCGTCAACTCAGTCCCAGGTGTGCACAATGC
TAACCGTGTGCGACGTTATCTGTCTGAAGATGAGCTACTCAGGGAGCTAT
CTGCGCTGGATGAGGCCCTGAAGGACGGACTAGAAAACGACAAAAGGGAT
GAAGAACTTGAAGGGAGAAGCAAAAGCGGCAGCGATGGCAGCGGCGGCAA
AAGTGGCAGCGGCGGCAAAAGTGGCAGCGGCGGTAAAAGTGGCCACGGCA
AGGATCACGGCAGCCACGGCAGCCACGGCAGCCACGGCAGCCACGGCGGC
CACGGCAGCCACGGCAAGGACCACAGCGGCCACGGCAGCCACGGCAAGCG
GGAACACACTTGGGGCGTCACCATGAGGTTCTACGTCGTGTGTCTGACTC
TACTGCTGGGGGTGCTGACCGTCAACTCAGTCCCAGGTGTGCACAATGCT
AACCGTGTGCGACGTTATCTGTCTGAAGATGAGCTACTCAGGGAGCTATC
TGCGCTGGATGAGGCCCTGAAGGACGGACTAGAAAACGACAAAAGGGATG
AAGAACTTGAAGGGAGAAGCAAAAGCGGCAGCGATGGCAGCGGCGGCAAA
AGTGGCAGCGGCGGCAAAAGTGGCAGCGGCGGTAAAAGTGGCCACGGCAA
GGATCACGGCAGCCACGGCAGCCACGGCAGCCACGGCAGCCACGGCGGCC
ACGGCAGCCACGGCAAGGACCACAGCGGCCACGGCAGCCACGGCAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97401gene:BL97401Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97401_cuf25-E1BL97401_cuf25-E1-1564476830-412816Branchiostoma lanceolatumexon
BL97401_cuf25-E2BL97401_cuf25-E2-1564476830-412814Branchiostoma lanceolatumexon
BL97401_cuf25-E3BL97401_cuf25-E3-1564476830-412812Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97401_cuf25transcript:BL97401_cuf25-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000260genomeSc0000260:163856..171162 -
Properties
Property NameValue
Transcript idBL97401_cuf25
Biotypeprotein_coding