|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97396_cuf5 >transcript:BL97396_cuf5-protein ID=transcript:BL97396_cuf5-protein|Name=transcript:BL97396_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=470bp
VVESAGAPLVSANSAANTADGSSATYWAPSPTSGSYGSVLYDLRQPYWLY
YIRVLNFGDGDHYVTSFTLESSETGQDYTAAANFTFTQGAAAEVFDGFFA
RGRYLRFTVTGVVGGSEPWVAEIQLYGTPGWVRSLGCWTDRSSRAIQPLE
GTDPLLSDAYQSRQQPLEKCYTVSRGLGYSVFALQNGGWCASTATAQDTY
QRYGASSACAADGEGGGYANEVYQIIDEDHNPYMSSFLSNDRMFTCGSDP
SLFVLSGNNSTIGQMLSPNHGSGSYPGSSACSWLISAGHAGQVSLNFTDF
SLENSSECSNDYVAVYDGPGRSSRLLGNFCGNEGPGLVTSTAENLFVVFR
SDDSLELQGFVADIIATTVSKTVPECYPAITLAEGGPTMDEAVSVERPVP
FTIQALTDVTCNETYTVEFQWVVYSIVEGSVQWTNVSVPTNYPEILIPKN
TLGPGLVRLDLNATIVVERT Run BLAST on NCBI mRNA from alignment at Sc0000112:889639..891892- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97396_cuf5 ID=transcript:BL97396_cuf5|Name=transcript:BL97396_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=2254bp|location=Sequence derived from alignment at Sc0000112:889639..891892- (Branchiostoma lanceolatum)
GTGGTGGAGTCCGCTGGAGCCCCGCTGGTCAGCGCCAACAGCGCGGCCAA
CACCGCGGACGGCAGCAGCGCCACCTACTGGGCCCCGTCCCCCACATCCG
GGTCCTACGGCTCCGTCCTGTACGATCTGCGCCAGCCCTACTGGCTTTAC
TACATCCGGGTACTCAACTTCGGCGATGGGGATCATTACGTCACTTCCTT
TACCCTGGAATCGTCGGAAACTGGTCAGGACTACACGGCCGCTGCAAACT
TCACATTTACCCAGGGTGCCGCGGCGGAGGTCTTTGACGGCTTCTTCGCT
AGAGGGCGCTATTTGAGGTTTACTGTGACTGGAGTGGTGGGTGGGAGTGA
ACCATGGGTGGCAGAGATACAGCTCTATGGCACTCCAGGTACGAGTTTTG
AAGTCGCAATCGAGTTCATCTATTTCGATATAGATATCCATATCTCATAC
ACTCTACCAATGTAGACCGGGTCCGACATATATCCGTGATATCTCCTACA
CTCACCCCTGTGCCCCTGTAGGCTGGGTCCATGTCCATACATATATCCGT
GATATCTCCTGCACTAACCGTTTTCCCCATGTAGGCTGGGTCCAACATAT
ATCCGTGATATCTCCTACACTGACCACTGTGCCCCTGTATAGGCTGGATC
CATGTGATTTCCCTTGCACTAACCCCTGTAACCCTGTAGGCCGGGTCCAA
CATATACCCATGATATCTCCTGCACTAACCCGACTGTGCCCACCATGTAG
GCTGGGTCCGACACATATCCATTATATCTCCAGCACTAACCGCTGTACCC
CTGTAGGATGGGTCCGACATATATCCGTGATATCTCCTGCACTAACCCCT
TACCCCTGTAGGATGGGTCCATGTGATATCCCCTGCACTAACCACTGTAC
CCCTGTAGGCTGGGTGCGGTCGTTGGGCTGCTGGACGGACCGGTCATCCC
GTGCGATCCAGCCACTTGAGGGGACCGATCCGCTCCTGTCCGATGCCTAC
CAGAGCCGGCAGCAGCCGCTGGAGAAGTGCTACACCGTGTCCAGGGGTTT
GGGGTACAGCGTGTTCGCTCTGCAGAACGGCGGGTGGTGCGCGTCCACCG
CCACCGCGCAGGACACCTACCAGCGGTACGGGGCGTCCTCAGCCTGCGCG
GCGGACGGGGAGGGAGGAGGCTACGCCAATGAAGTCTACCAAATCATCGG
TAAGCACGCAGTGTTTGTCTATTGCCAAATCTCTCACTACCAAATCATCG
GTAAGCACGCAGTATTTCATCTATTGTCAAATCTCTCTCTCTTGAAAGGC
TATTTCGATTCCTTCCGGTGGAGCCATTAACATCTTAGATCTTACCGTTT
ATCTGTGTTTCGGAGATTTTCTAACAGATAGCCTGTCATTGAACGGCAAT
GTTGTTTTTGCAGATGAAGACCACAATCCCTACATGTCATCCTTCCTATC
GAACGACAGGATGTTCACGTGTGGAAGCGACCCGAGTCTGTTCGTCCTTT
CCGGGAATAACTCTACTATTGGGCAGATGCTGAGCCCGAACCACGGCAGC
GGCAGCTACCCGGGAAGCAGCGCGTGCAGCTGGCTCATCAGCGCCGGCCA
CGCCGGGCAAGTCTCCCTCAACTTCACGGACTTCAGCCTGGAGAACAGCT
CCGAGTGCTCTAACGACTACGTTGCTGTGTATGACGGGCCCGGCAGGTCG
TCGCGGCTGCTTGGTAACTTTTGCGGCAACGAGGGACCGGGACTAGTGAC
GTCAACGGCTGAAAATCTGTTTGTAGTCTTCAGATCAGATGATTCATTGG
AACTGCAGGGCTTCGTGGCGGATATCATCGCCACAACAGTGTCAAAGACT
GTCCCAGGTATGACTACGTTTGATGTCGGGTATTCCTGACGGCGTCAAAT
CGTATTCTCCTATAAATTCCCACTATGTTGAAGCTAACGTTTTTCCTTTT
TTCCAACTTGTGCAGAATGTTACCCGGCTATCACTCTTGCTGAGGGAGGA
CCGACCATGGATGAGGCCGTATCAGTGGAAAGGCCGGTGCCCTTCACCAT
TCAGGCTCTCACTGACGTCACATGTAATGAAACATACACCGTAGAGTTTC
AGTGGGTAGTTTATTCCATTGTTGAAGGGTCAGTTCAGTGGACAAATGTC
AGCGTGCCGACAAACTACCCAGAAATCTTGATCCCAAAGAACACCCTCGG
TCCCGGCCTGGTCCGACTTGATCTAAACGCGACCATTGTGGTTGAGAGAA
CCGG Coding sequence (CDS) from alignment at Sc0000112:889639..891892- >transcript:BL97396_cuf5 ID=transcript:BL97396_cuf5|Name=transcript:BL97396_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=5640bp|location=Sequence derived from alignment at Sc0000112:889639..891892- (Branchiostoma lanceolatum)
GTGGTGGAGTCCGCTGGAGCCCCGCTGGTCAGCGCCAACAGCGCGGCCAA
CACCGCGGACGGCAGCAGCGCCACCTACTGGGCCCCGTCCCCCACATCCG
GGTCCTACGGCTCCGTCCTGTACGATCTGCGCCAGCCCTACTGGCTTTAC
TACATCCGGGTACTCAACTTCGGCGATGGGGATCATTACGTCACTTCCTT
TACCCTGGAATCGTCGGAAACTGGTCAGGACTACACGGCCGCTGCAAACT
TCACATTTACCCAGGGTGCCGCGGCGGAGGTCTTTGACGGCTTCTTCGCT
AGAGGGCGCTATTTGAGGTTTACTGTGACTGGAGTGGTGGGTGGGAGTGA
ACCATGGGTGGCAGAGATACAGCTCTATGGCACTCCAGGCTGGGTGCGGT
CGTTGGGCTGCTGGACGGACCGGTCATCCCGTGCGATCCAGCCACTTGAG
GGGACCGATCCGCTCCTGTCCGATGCCTACCAGAGCCGGCAGCAGCCGCT
GGAGAAGTGCTACACCGTGTCCAGGGGTTTGGGGTACAGCGTGTTCGCTC
TGCAGAACGGCGGGTGGTGCGCGTCCACCGCCACCGCGCAGGACACCTAC
CAGCGGTACGGGGCGTCCTCAGCCTGCGCGGCGGACGGGGAGGGAGGAGG
CTACGCCAATGAAGTCTACCAAATCATCGATGAAGACCACAATCCCTACA
TGTCATCCTTCCTATCGAACGACAGGATGTTCACGTGTGGAAGCGACCCG
AGTCTGTTCGTCCTTTCCGGGAATAACTCTACTATTGGGCAGATGCTGAG
CCCGAACCACGGCAGCGGCAGCTACCCGGGAAGCAGCGCGTGCAGCTGGC
TCATCAGCGCCGGCCACGCCGGGCAAGTCTCCCTCAACTTCACGGACTTC
AGCCTGGAGAACAGCTCCGAGTGCTCTAACGACTACGTTGCTGTGTATGA
CGGGCCCGGCAGGTCGTCGCGGCTGCTTGGTAACTTTTGCGGCAACGAGG
GACCGGGACTAGTGACGTCAACGGCTGAAAATCTGTTTGTAGTCTTCAGA
TCAGATGATTCATTGGAACTGCAGGGCTTCGTGGCGGATATCATCGCCAC
AACAGTGTCAAAGACTGTCCCAGAATGTTACCCGGCTATCACTCTTGCTG
AGGGAGGACCGACCATGGATGAGGCCGTATCAGTGGAAAGGCCGGTGCCC
TTCACCATTCAGGCTCTCACTGACGTCACATGTAATGAAACATACACCGT
AGAGTTTCAGTGGGTAGTTTATTCCATTGTTGAAGGGTCAGTTCAGTGGA
CAAATGTCAGCGTGCCGACAAACTACCCAGAAATCTTGATCCCAAAGAAC
ACCCTCGGTCCCGGCCTGGTCCGACTTGATCTAAACGCGACCATTGTGGT
TGAGAGAACCGTGGTGGAGTCCGCTGGAGCCCCGCTGGTCAGCGCCAACA
GCGCGGCCAACACCGCGGACGGCAGCAGCGCCACCTACTGGGCCCCGTCC
CCCACATCCGGGTCCTACGGCTCCGTCCTGTACGATCTGCGCCAGCCCTA
CTGGCTTTACTACATCCGGGTACTCAACTTCGGCGATGGGGATCATTACG
TCACTTCCTTTACCCTGGAATCGTCGGAAACTGGTCAGGACTACACGGCC
GCTGCAAACTTCACATTTACCCAGGGTGCCGCGGCGGAGGTCTTTGACGG
CTTCTTCGCTAGAGGGCGCTATTTGAGGTTTACTGTGACTGGAGTGGTGG
GTGGGAGTGAACCATGGGTGGCAGAGATACAGCTCTATGGCACTCCAGGC
TGGGTGCGGTCGTTGGGCTGCTGGACGGACCGGTCATCCCGTGCGATCCA
GCCACTTGAGGGGACCGATCCGCTCCTGTCCGATGCCTACCAGAGCCGGC
AGCAGCCGCTGGAGAAGTGCTACACCGTGTCCAGGGGTTTGGGGTACAGC
GTGTTCGCTCTGCAGAACGGCGGGTGGTGCGCGTCCACCGCCACCGCGCA
GGACACCTACCAGCGGTACGGGGCGTCCTCAGCCTGCGCGGCGGACGGGG
AGGGAGGAGGCTACGCCAATGAAGTCTACCAAATCATCGATGAAGACCAC
AATCCCTACATGTCATCCTTCCTATCGAACGACAGGATGTTCACGTGTGG
AAGCGACCCGAGTCTGTTCGTCCTTTCCGGGAATAACTCTACTATTGGGC
AGATGCTGAGCCCGAACCACGGCAGCGGCAGCTACCCGGGAAGCAGCGCG
TGCAGCTGGCTCATCAGCGCCGGCCACGCCGGGCAAGTCTCCCTCAACTT
CACGGACTTCAGCCTGGAGAACAGCTCCGAGTGCTCTAACGACTACGTTG
CTGTGTATGACGGGCCCGGCAGGTCGTCGCGGCTGCTTGGTAACTTTTGC
GGCAACGAGGGACCGGGACTAGTGACGTCAACGGCTGAAAATCTGTTTGT
AGTCTTCAGATCAGATGATTCATTGGAACTGCAGGGCTTCGTGGCGGATA
TCATCGCCACAACAGTGTCAAAGACTGTCCCAGAATGTTACCCGGCTATC
ACTCTTGCTGAGGGAGGACCGACCATGGATGAGGCCGTATCAGTGGAAAG
GCCGGTGCCCTTCACCATTCAGGCTCTCACTGACGTCACATGTAATGAAA
CATACACCGTAGAGTTTCAGTGGGTAGTTTATTCCATTGTTGAAGGGTCA
GTTCAGTGGACAAATGTCAGCGTGCCGACAAACTACCCAGAAATCTTGAT
CCCAAAGAACACCCTCGGTCCCGGCCTGGTCCGACTTGATCTAAACGCGA
CCATTGTGGTTGAGAGAACCGTGGTGGAGTCCGCTGGAGCCCCGCTGGTC
AGCGCCAACAGCGCGGCCAACACCGCGGACGGCAGCAGCGCCACCTACTG
GGCCCCGTCCCCCACATCCGGGTCCTACGGCTCCGTCCTGTACGATCTGC
GCCAGCCCTACTGGCTTTACTACATCCGGGTACTCAACTTCGGCGATGGG
GATCATTACGTCACTTCCTTTACCCTGGAATCGTCGGAAACTGGTCAGGA
CTACACGGCCGCTGCAAACTTCACATTTACCCAGGGTGCCGCGGCGGAGG
TCTTTGACGGCTTCTTCGCTAGAGGGCGCTATTTGAGGTTTACTGTGACT
GGAGTGGTGGGTGGGAGTGAACCATGGGTGGCAGAGATACAGCTCTATGG
CACTCCAGGCTGGGTGCGGTCGTTGGGCTGCTGGACGGACCGGTCATCCC
GTGCGATCCAGCCACTTGAGGGGACCGATCCGCTCCTGTCCGATGCCTAC
CAGAGCCGGCAGCAGCCGCTGGAGAAGTGCTACACCGTGTCCAGGGGTTT
GGGGTACAGCGTGTTCGCTCTGCAGAACGGCGGGTGGTGCGCGTCCACCG
CCACCGCGCAGGACACCTACCAGCGGTACGGGGCGTCCTCAGCCTGCGCG
GCGGACGGGGAGGGAGGAGGCTACGCCAATGAAGTCTACCAAATCATCGA
TGAAGACCACAATCCCTACATGTCATCCTTCCTATCGAACGACAGGATGT
TCACGTGTGGAAGCGACCCGAGTCTGTTCGTCCTTTCCGGGAATAACTCT
ACTATTGGGCAGATGCTGAGCCCGAACCACGGCAGCGGCAGCTACCCGGG
AAGCAGCGCGTGCAGCTGGCTCATCAGCGCCGGCCACGCCGGGCAAGTCT
CCCTCAACTTCACGGACTTCAGCCTGGAGAACAGCTCCGAGTGCTCTAAC
GACTACGTTGCTGTGTATGACGGGCCCGGCAGGTCGTCGCGGCTGCTTGG
TAACTTTTGCGGCAACGAGGGACCGGGACTAGTGACGTCAACGGCTGAAA
ATCTGTTTGTAGTCTTCAGATCAGATGATTCATTGGAACTGCAGGGCTTC
GTGGCGGATATCATCGCCACAACAGTGTCAAAGACTGTCCCAGAATGTTA
CCCGGCTATCACTCTTGCTGAGGGAGGACCGACCATGGATGAGGCCGTAT
CAGTGGAAAGGCCGGTGCCCTTCACCATTCAGGCTCTCACTGACGTCACA
TGTAATGAAACATACACCGTAGAGTTTCAGTGGGTAGTTTATTCCATTGT
TGAAGGGTCAGTTCAGTGGACAAATGTCAGCGTGCCGACAAACTACCCAG
AAATCTTGATCCCAAAGAACACCCTCGGTCCCGGCCTGGTCCGACTTGAT
CTAAACGCGACCATTGTGGTTGAGAGAACCGTGGTGGAGTCCGCTGGAGC
CCCGCTGGTCAGCGCCAACAGCGCGGCCAACACCGCGGACGGCAGCAGCG
CCACCTACTGGGCCCCGTCCCCCACATCCGGGTCCTACGGCTCCGTCCTG
TACGATCTGCGCCAGCCCTACTGGCTTTACTACATCCGGGTACTCAACTT
CGGCGATGGGGATCATTACGTCACTTCCTTTACCCTGGAATCGTCGGAAA
CTGGTCAGGACTACACGGCCGCTGCAAACTTCACATTTACCCAGGGTGCC
GCGGCGGAGGTCTTTGACGGCTTCTTCGCTAGAGGGCGCTATTTGAGGTT
TACTGTGACTGGAGTGGTGGGTGGGAGTGAACCATGGGTGGCAGAGATAC
AGCTCTATGGCACTCCAGGCTGGGTGCGGTCGTTGGGCTGCTGGACGGAC
CGGTCATCCCGTGCGATCCAGCCACTTGAGGGGACCGATCCGCTCCTGTC
CGATGCCTACCAGAGCCGGCAGCAGCCGCTGGAGAAGTGCTACACCGTGT
CCAGGGGTTTGGGGTACAGCGTGTTCGCTCTGCAGAACGGCGGGTGGTGC
GCGTCCACCGCCACCGCGCAGGACACCTACCAGCGGTACGGGGCGTCCTC
AGCCTGCGCGGCGGACGGGGAGGGAGGAGGCTACGCCAATGAAGTCTACC
AAATCATCGATGAAGACCACAATCCCTACATGTCATCCTTCCTATCGAAC
GACAGGATGTTCACGTGTGGAAGCGACCCGAGTCTGTTCGTCCTTTCCGG
GAATAACTCTACTATTGGGCAGATGCTGAGCCCGAACCACGGCAGCGGCA
GCTACCCGGGAAGCAGCGCGTGCAGCTGGCTCATCAGCGCCGGCCACGCC
GGGCAAGTCTCCCTCAACTTCACGGACTTCAGCCTGGAGAACAGCTCCGA
GTGCTCTAACGACTACGTTGCTGTGTATGACGGGCCCGGCAGGTCGTCGC
GGCTGCTTGGTAACTTTTGCGGCAACGAGGGACCGGGACTAGTGACGTCA
ACGGCTGAAAATCTGTTTGTAGTCTTCAGATCAGATGATTCATTGGAACT
GCAGGGCTTCGTGGCGGATATCATCGCCACAACAGTGTCAAAGACTGTCC
CAGAATGTTACCCGGCTATCACTCTTGCTGAGGGAGGACCGACCATGGAT
GAGGCCGTATCAGTGGAAAGGCCGGTGCCCTTCACCATTCAGGCTCTCAC
TGACGTCACATGTAATGAAACATACACCGTAGAGTTTCAGTGGGTAGTTT
ATTCCATTGTTGAAGGGTCAGTTCAGTGGACAAATGTCAGCGTGCCGACA
AACTACCCAGAAATCTTGATCCCAAAGAACACCCTCGGTCCCGGCCTGGT
CCGACTTGATCTAAACGCGACCATTGTGGTTGAGAGAACC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000112 | genome | Sc0000112:889639..891892 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97396_cuf5 |
| Biotype | protein_coding |
|
