transcript:BL97395_cuf4 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97395_cuf4
Unique Nametranscript:BL97395_cuf4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97395_cuf4

>transcript:BL97395_cuf4-protein ID=transcript:BL97395_cuf4-protein|Name=transcript:BL97395_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=242bp
ARAVSREEDLVLSAAASYDPNGIVTESAGFNFTWSCLDENGRPCGIFTDG
GRGPQYRIPPASLPVSSSVLNISVAASSGRQTAPPFRQRVELRNGTVLEV
DIVDCNQRANPSERLVLLTSCRNCPASSTAYQWSLSESPPGVQIGEADWS
GLLSTTSTAPSLVLTANSLKVPGTYRIRLDVSAPGEAEGFTECVIDMDSA
PESGACAVQPASGTAEFSVVCEGFSDVDTPLTYSLYRRSDSH
Run BLAST on NCBI

mRNA from alignment at Sc0000112:887665..889560-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97395_cuf4 ID=transcript:BL97395_cuf4|Name=transcript:BL97395_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=1896bp|location=Sequence derived from alignment at Sc0000112:887665..889560- (Branchiostoma lanceolatum)
CGCCAGGGCCGTGAGCCGAGAGGAGGACTTGGTACTCAGCGCGGCCGCTT CCTACGACCCTAACGGCATTGTGACAGAGTCAGCAGGTTTCAACTTTACA TGGAGTTGCTTGGATGAAAACGGTAAGTTTGACGATGTACCAGTCAGACC TGTGACAAATCTTTAATTCTACAATTTCATGTTGCATTTTCCGCTTAGTT CCACCTCGTTCTACAGGCAATAATCGAGTAAGATTGGAAGGATGATACAT TGTTGACAGCCAGAATGTTTGTATCTCCCATCCCAGGGCGTCCTTGCGGC ATATTCACGGACGGAGGGCGCGGGCCGCAGTACAGGATCCCCCCGGCGTC GTTACCGGTCTCCTCCAGCGTGTTAAACATTTCGGTAGCGGCGAGTTCCG GCCGGCAAACAGCCCCGCCCTTCCGGCAGAGAGTCGAGCTGCGTAACGGC ACTGTGCTGGAGGTGGACATCGTGTAAGTGCTCTTGTCAGAAACATGGCG TCTTCCCAACATTCATATGATAAGAGTATGATAATTATAAATAGGTAATA GAAAAAAATAAGACGTAGGTTCTGCATCTGCATTGTTCAATCGCAACGCA ACAGTAGTTTTTTTTCTGCGCGCGTCTCAACGTGTTAATATTGTAAAGTA CAACCCATGCTATAGTTTGCACACTTCTTACACTATCTAAGTGACCACTA CTTGTAAACCTCATATCTGATTGATGCATATCCTTGCAATGTAAGACTGT AATTTCACTTTTTCATTTGTTTAATTTTTCAACCAACACAGAGATTGTAA CCAGCGCGCCAATCCTTCTGAGCGGCTCGTGCTGCTGACGTCATGTCGGA ACTGCCCAGCATCCTCCACGGCGTACCAGTGGTCGCTGTCCGAGAGTCCG CCTGGGGTTCAGATTGGGGAAGCTGACTGGAGCGGCCTCCTCTCTACCAC CAGCACAGCACCCAGCCTGGTTCTCACGGCTAACTCACTCAAGGTTTGTA CATACATGTACATGTAGTAAGATTTTTAGCGAGTCCGCCTGGGGTTCAGA TTGAGGGAGCTGACTGGAGCGGCCTCCTCTCTACCTCCAGTACAGCACCC AACCTGGTTCTCAAGGCCAACTCAGTCAAGGTTTGTACGGTATAATCAGA CTATTTGATCAACACATCCTTGCCATGCGTATGTTACGGGAGAATGAGTT TTAACAACGTTGCCTGATAACACAAGCATTTTTGTTCCAGGTCCCGGGAA CATACCGAATCCGTCTGGACGTGTCGGCTCCGGGGGAAGCAGAAGGATTC ACTGAGTGCGTCATCGACATGGACAGCGCGCCTGAGAGTGGCGCATGCGC CGTACAGCCAGCGTCCGGCACCGCGGAGTTTTCTGTGGTGTGCGAAGGTA AGGTGCTGGCTACGAATCCTAGTCACTTTGTGAGTCCGAACACTTCAATT ATGAAAGAAAGAAACCCTGATAACTGATGGTGTATAGGTTCGTGAACTTT GAAAAGCCGTTTAAAGTCGGTGGGAGCAGATACACTTTTTAGAAGACTAC ATTGAAGTTCAAATTGAACAAAGTTCAAAGATAAACAGAAGATTTCTTAA CATCACCCAAGTTCGATGGATAGTTGTTTATGATAAAATATGTTGCACTT AACTGCATTGCATCATGATAGATCTCTGGACTACATTATTAAACATTGCT GCTGCGTCATGTAACTGTTGGATTCAAAAGAATACTGACTGCAGAACTGG AACAGTTGCTTTTTGTATTGAGTTTGCGTTCCCCTTAAACACTTGCAATT GATATTTAATGTTTTGTTCAACATTGCTTCTGCAGGATTCAGCGATGTGG ACACGCCGCTGACATACTCGCTCTATCGGCGGTCCGATTCCCACGA

Coding sequence (CDS) from alignment at Sc0000112:887665..889560-

>transcript:BL97395_cuf4 ID=transcript:BL97395_cuf4|Name=transcript:BL97395_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=3630bp|location=Sequence derived from alignment at Sc0000112:887665..889560- (Branchiostoma lanceolatum)
GCCAGGGCCGTGAGCCGAGAGGAGGACTTGGTACTCAGCGCGGCCGCTTC
CTACGACCCTAACGGCATTGTGACAGAGTCAGCAGGTTTCAACTTTACAT
GGAGTTGCTTGGATGAAAACGGGCGTCCTTGCGGCATATTCACGGACGGA
GGGCGCGGGCCGCAGTACAGGATCCCCCCGGCGTCGTTACCGGTCTCCTC
CAGCGTGTTAAACATTTCGGTAGCGGCGAGTTCCGGCCGGCAAACAGCCC
CGCCCTTCCGGCAGAGAGTCGAGCTGCGTAACGGCACTGTGCTGGAGGTG
GACATCGTAGATTGTAACCAGCGCGCCAATCCTTCTGAGCGGCTCGTGCT
GCTGACGTCATGTCGGAACTGCCCAGCATCCTCCACGGCGTACCAGTGGT
CGCTGTCCGAGAGTCCGCCTGGGGTTCAGATTGGGGAAGCTGACTGGAGC
GGCCTCCTCTCTACCACCAGCACAGCACCCAGCCTGGTTCTCACGGCTAA
CTCACTCAAGGTCCCGGGAACATACCGAATCCGTCTGGACGTGTCGGCTC
CGGGGGAAGCAGAAGGATTCACTGAGTGCGTCATCGACATGGACAGCGCG
CCTGAGAGTGGCGCATGCGCCGTACAGCCAGCGTCCGGCACCGCGGAGTT
TTCTGTGGTGTGCGAAGGATTCAGCGATGTGGACACGCCGCTGACATACT
CGCTCTATCGGCGGTCCGATTCCCACGCCAGGGCCGTGAGCCGAGAGGAG
GACTTGGTACTCAGCGCGGCCGCTTCCTACGACCCTAACGGCATTGTGAC
AGAGTCAGCAGGTTTCAACTTTACATGGAGTTGCTTGGATGAAAACGGGC
GTCCTTGCGGCATATTCACGGACGGAGGGCGCGGGCCGCAGTACAGGATC
CCCCCGGCGTCGTTACCGGTCTCCTCCAGCGTGTTAAACATTTCGGTAGC
GGCGAGTTCCGGCCGGCAAACAGCCCCGCCCTTCCGGCAGAGAGTCGAGC
TGCGTAACGGCACTGTGCTGGAGGTGGACATCGTAGATTGTAACCAGCGC
GCCAATCCTTCTGAGCGGCTCGTGCTGCTGACGTCATGTCGGAACTGCCC
AGCATCCTCCACGGCGTACCAGTGGTCGCTGTCCGAGAGTCCGCCTGGGG
TTCAGATTGGGGAAGCTGACTGGAGCGGCCTCCTCTCTACCACCAGCACA
GCACCCAGCCTGGTTCTCACGGCTAACTCACTCAAGGTCCCGGGAACATA
CCGAATCCGTCTGGACGTGTCGGCTCCGGGGGAAGCAGAAGGATTCACTG
AGTGCGTCATCGACATGGACAGCGCGCCTGAGAGTGGCGCATGCGCCGTA
CAGCCAGCGTCCGGCACCGCGGAGTTTTCTGTGGTGTGCGAAGGATTCAG
CGATGTGGACACGCCGCTGACATACTCGCTCTATCGGCGGTCCGATTCCC
ACGCCAGGGCCGTGAGCCGAGAGGAGGACTTGGTACTCAGCGCGGCCGCT
TCCTACGACCCTAACGGCATTGTGACAGAGTCAGCAGGTTTCAACTTTAC
ATGGAGTTGCTTGGATGAAAACGGGCGTCCTTGCGGCATATTCACGGACG
GAGGGCGCGGGCCGCAGTACAGGATCCCCCCGGCGTCGTTACCGGTCTCC
TCCAGCGTGTTAAACATTTCGGTAGCGGCGAGTTCCGGCCGGCAAACAGC
CCCGCCCTTCCGGCAGAGAGTCGAGCTGCGTAACGGCACTGTGCTGGAGG
TGGACATCGTAGATTGTAACCAGCGCGCCAATCCTTCTGAGCGGCTCGTG
CTGCTGACGTCATGTCGGAACTGCCCAGCATCCTCCACGGCGTACCAGTG
GTCGCTGTCCGAGAGTCCGCCTGGGGTTCAGATTGGGGAAGCTGACTGGA
GCGGCCTCCTCTCTACCACCAGCACAGCACCCAGCCTGGTTCTCACGGCT
AACTCACTCAAGGTCCCGGGAACATACCGAATCCGTCTGGACGTGTCGGC
TCCGGGGGAAGCAGAAGGATTCACTGAGTGCGTCATCGACATGGACAGCG
CGCCTGAGAGTGGCGCATGCGCCGTACAGCCAGCGTCCGGCACCGCGGAG
TTTTCTGTGGTGTGCGAAGGATTCAGCGATGTGGACACGCCGCTGACATA
CTCGCTCTATCGGCGGTCCGATTCCCACGCCAGGGCCGTGAGCCGAGAGG
AGGACTTGGTACTCAGCGCGGCCGCTTCCTACGACCCTAACGGCATTGTG
ACAGAGTCAGCAGGTTTCAACTTTACATGGAGTTGCTTGGATGAAAACGG
GCGTCCTTGCGGCATATTCACGGACGGAGGGCGCGGGCCGCAGTACAGGA
TCCCCCCGGCGTCGTTACCGGTCTCCTCCAGCGTGTTAAACATTTCGGTA
GCGGCGAGTTCCGGCCGGCAAACAGCCCCGCCCTTCCGGCAGAGAGTCGA
GCTGCGTAACGGCACTGTGCTGGAGGTGGACATCGTAGATTGTAACCAGC
GCGCCAATCCTTCTGAGCGGCTCGTGCTGCTGACGTCATGTCGGAACTGC
CCAGCATCCTCCACGGCGTACCAGTGGTCGCTGTCCGAGAGTCCGCCTGG
GGTTCAGATTGGGGAAGCTGACTGGAGCGGCCTCCTCTCTACCACCAGCA
CAGCACCCAGCCTGGTTCTCACGGCTAACTCACTCAAGGTCCCGGGAACA
TACCGAATCCGTCTGGACGTGTCGGCTCCGGGGGAAGCAGAAGGATTCAC
TGAGTGCGTCATCGACATGGACAGCGCGCCTGAGAGTGGCGCATGCGCCG
TACAGCCAGCGTCCGGCACCGCGGAGTTTTCTGTGGTGTGCGAAGGATTC
AGCGATGTGGACACGCCGCTGACATACTCGCTCTATCGGCGGTCCGATTC
CCACGCCAGGGCCGTGAGCCGAGAGGAGGACTTGGTACTCAGCGCGGCCG
CTTCCTACGACCCTAACGGCATTGTGACAGAGTCAGCAGGTTTCAACTTT
ACATGGAGTTGCTTGGATGAAAACGGGCGTCCTTGCGGCATATTCACGGA
CGGAGGGCGCGGGCCGCAGTACAGGATCCCCCCGGCGTCGTTACCGGTCT
CCTCCAGCGTGTTAAACATTTCGGTAGCGGCGAGTTCCGGCCGGCAAACA
GCCCCGCCCTTCCGGCAGAGAGTCGAGCTGCGTAACGGCACTGTGCTGGA
GGTGGACATCGTAGATTGTAACCAGCGCGCCAATCCTTCTGAGCGGCTCG
TGCTGCTGACGTCATGTCGGAACTGCCCAGCATCCTCCACGGCGTACCAG
TGGTCGCTGTCCGAGAGTCCGCCTGGGGTTCAGATTGGGGAAGCTGACTG
GAGCGGCCTCCTCTCTACCACCAGCACAGCACCCAGCCTGGTTCTCACGG
CTAACTCACTCAAGGTCCCGGGAACATACCGAATCCGTCTGGACGTGTCG
GCTCCGGGGGAAGCAGAAGGATTCACTGAGTGCGTCATCGACATGGACAG
CGCGCCTGAGAGTGGCGCATGCGCCGTACAGCCAGCGTCCGGCACCGCGG
AGTTTTCTGTGGTGTGCGAAGGATTCAGCGATGTGGACACGCCGCTGACA
TACTCGCTCTATCGGCGGTCCGATTCCCAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97395gene:BL97395Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97395_cuf4transcript:BL97395_cuf4-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97395_cuf4-E1BL97395_cuf4-E1-1564476830-315026Branchiostoma lanceolatumexon
BL97395_cuf4-E2BL97395_cuf4-E2-1564476830-315023Branchiostoma lanceolatumexon
BL97395_cuf4-E3BL97395_cuf4-E3-1564476830-315021Branchiostoma lanceolatumexon
BL97395_cuf4-E4BL97395_cuf4-E4-1564476830-315019Branchiostoma lanceolatumexon
BL97395_cuf4-E5BL97395_cuf4-E5-1564476830-315017Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000112genomeSc0000112:887665..889560 -
Properties
Property NameValue
Transcript idBL97395_cuf4
Biotypeprotein_coding