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transcript:BL97390_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97390_cuf0
Unique Nametranscript:BL97390_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97390_cuf0

>transcript:BL97390_cuf0-protein ID=transcript:BL97390_cuf0-protein|Name=transcript:BL97390_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=154bp
MSLRLTLRLAIYIVPSGSSCIFAPAAGWTEETCKVSTMVFRTLLAVFATV
AAAQGQSCVFPFTYHGGTFNSCTSVDSDVAWCSTDAVYVGNYVDCDERYC
TFPFTYHGMTFTTCTMYDDDRPWCSISPQYGSDHVYCSDGAAVLSVDAEV
DKPG
Run BLAST on NCBI

mRNA from alignment at Sc0000073:1073197..1075077+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97390_cuf0 ID=transcript:BL97390_cuf0|Name=transcript:BL97390_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1881bp|location=Sequence derived from alignment at Sc0000073:1073197..1075077+ (Branchiostoma lanceolatum)
TCAAATGTTCCTTGATTAAGTTGTCTGAACAAAACTTTGAAATAAATGAA GTAGGGTATGAAAGTACAATTGCTTTTCAGCTTTTCTCGGACTCCAGGAT TTTGATGCCTAAAACCTTGCCTCCCCGTTGGTTTGCTCTGTTGGTCTTGC ATTTTTTTTAGAATAAAATGAAGAGATCCAACGAATTGTATTGGTGTCGT CTAATGCTTCGATTCATCAATCGATCCATGTAATATCCCGTGCGTCAGAA ATGGGGTCATGTCCTTGAGGCTGACCTTACGATTAGCTATATATATTGTG CCCAGCGGTTCGAGCTGCATCTTCGCTCCTGCGGCTGGCTGGACGGAAGA GACCTGCAAAGTTAGCACCATGGTGTTCCGGACACTTCTCGCCGTGTTTG CCACTGTGGCAGCGGCTCAAGGTGTGTGACATTGGTGGATTCTGTGGTAC CACGTTACTTATTTCGCTTGTCGTCTGACTAGTACAGCAGGCAGCTTAGG TCAAGGGTGTCCTATGGGAAAAAATGCTGGTTGGGACTAGGAAACGTGGG TGTTGAATCCCACAACAAGACATGAAAGGTTTCCATCTTTTCTAAGAACT GACTCTTATATATCTTTGTGAAATGTTTTCATTAACTGAATGTTTGCTGT TGACTGCCGTGTTTCGTCCCATATCTGATTTGCATTTTTCAACTTTGTGA AGAGATAGATATATAGCTGCCACGACAATCCCTTAATATCTAATTTATCT TTGTTTTGTTGTCTCCGGGGTAGCAAAAGCGCAAGGGACGCGATGGTGGG TTAAATTGAACAATGAAAAATATGCTTAGCAATGTAATCGTAAGCCACCA CGAAAGTCGTGTCTTGACGTAAGTCACATCTTGAAATGTACATGGATGTT CATGGCCTGAAGTTGACCCCCAGCTTCTATAATTTTTTTTCATATTTGGG GGAGTACAAATGATTCCCTCGCCTGCTCTCAGTGTAAGACTCTTCCTACA GATTTGAGACGCGCTAGTGCAGTGTACAGTGTCCGACGTATGGGCAACTT CTTACCTTAGCATATCTGAGTCACAAGCTCCCGTCTCAAACGGCCCTGAG CCGTAAACACGAGACATCACAAACATTTAGAGGAGTCTTAAATGGAGATT CATGCGATTGATACCTACACTCCTCAGGGCAAAGTTGCGTCTTCCCGTTC ACCTATCATGGCGGCACCTTTAACAGCTGCACCTCTGTTGACTCGGATGT TGCGTGGTGCTCAACAGACGCCGTGTACGTCGGAAACTACGTCGACTGCG ACGAACGTGAGTATCAATGGCTGTTAAAATCAGGGAGACTTAAGAAAAAT TTCAAGCTATTTTGACTTTGTCTTACATCCTTAGCAGAAGAGGAATTTTC AGACGGTCTTTGTCGAGGTACAGTTTTCTGTCAAGAATGCATATGCATCA ACTTCAGTCTTTACCTTACCCCATCAAAAACACCCGGTTAAAGAATTTTC ATTGCTGCAGAAAATACACTGTAAGGCAGTGAAAAATGTTCCATCAACCT CACCAGCACGTATGTACACGTATGTTAAGTTTACACGTTGTTTCGTCAGG CTACTGTACGTTCCCGTTCACGTACCACGGGATGACGTTCACGACCTGCA CCATGTATGACGACGACCGCCCCTGGTGTTCCATCTCACCGCAGTACGGG TCAGACCACGTGTACTGCAGCGACGGCGCAGGTCAGTCTCGGTACTGCAT ATTAGCGAAGTCTATAAAGTTCTAATTTTCTTGCAATAGTCACCTTATCT GTTTACCGGAGTTGATTTATCATCTTTTGTTTGTTTGTTTCAGCCGTGCT TAGCGTGGACGCAGAAGTTGACAAACCAGGT

Coding sequence (CDS) from alignment at Sc0000073:1073197..1075077+

>transcript:BL97390_cuf0 ID=transcript:BL97390_cuf0|Name=transcript:BL97390_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1848bp|location=Sequence derived from alignment at Sc0000073:1073197..1075077+ (Branchiostoma lanceolatum)
ATGTCCTTGAGGCTGACCTTACGATTAGCTATATATATTGTGCCCAGCGG
TTCGAGCTGCATCTTCGCTCCTGCGGCTGGCTGGACGGAAGAGACCTGCA
AAGTTAGCACCATGGTGTTCCGGACACTTCTCGCCGTGTTTGCCACTGTG
GCAGCGGCTCAAGGGCAAAGTTGCGTCTTCCCGTTCACCTATCATGGCGG
CACCTTTAACAGCTGCACCTCTGTTGACTCGGATGTTGCGTGGTGCTCAA
CAGACGCCGTGTACGTCGGAAACTACGTCGACTGCGACGAACGCTACTGT
ACGTTCCCGTTCACGTACCACGGGATGACGTTCACGACCTGCACCATGTA
TGACGACGACCGCCCCTGGTGTTCCATCTCACCGCAGTACGGGTCAGACC
ACGTGTACTGCAGCGACGGCGCAGCCGTGCTTAGCGTGGACGCAGAAGTT
GACAAACCAGGTATGTCCTTGAGGCTGACCTTACGATTAGCTATATATAT
TGTGCCCAGCGGTTCGAGCTGCATCTTCGCTCCTGCGGCTGGCTGGACGG
AAGAGACCTGCAAAGTTAGCACCATGGTGTTCCGGACACTTCTCGCCGTG
TTTGCCACTGTGGCAGCGGCTCAAGGGCAAAGTTGCGTCTTCCCGTTCAC
CTATCATGGCGGCACCTTTAACAGCTGCACCTCTGTTGACTCGGATGTTG
CGTGGTGCTCAACAGACGCCGTGTACGTCGGAAACTACGTCGACTGCGAC
GAACGCTACTGTACGTTCCCGTTCACGTACCACGGGATGACGTTCACGAC
CTGCACCATGTATGACGACGACCGCCCCTGGTGTTCCATCTCACCGCAGT
ACGGGTCAGACCACGTGTACTGCAGCGACGGCGCAGCCGTGCTTAGCGTG
GACGCAGAAGTTGACAAACCAGGTATGTCCTTGAGGCTGACCTTACGATT
AGCTATATATATTGTGCCCAGCGGTTCGAGCTGCATCTTCGCTCCTGCGG
CTGGCTGGACGGAAGAGACCTGCAAAGTTAGCACCATGGTGTTCCGGACA
CTTCTCGCCGTGTTTGCCACTGTGGCAGCGGCTCAAGGGCAAAGTTGCGT
CTTCCCGTTCACCTATCATGGCGGCACCTTTAACAGCTGCACCTCTGTTG
ACTCGGATGTTGCGTGGTGCTCAACAGACGCCGTGTACGTCGGAAACTAC
GTCGACTGCGACGAACGCTACTGTACGTTCCCGTTCACGTACCACGGGAT
GACGTTCACGACCTGCACCATGTATGACGACGACCGCCCCTGGTGTTCCA
TCTCACCGCAGTACGGGTCAGACCACGTGTACTGCAGCGACGGCGCAGCC
GTGCTTAGCGTGGACGCAGAAGTTGACAAACCAGGTATGTCCTTGAGGCT
GACCTTACGATTAGCTATATATATTGTGCCCAGCGGTTCGAGCTGCATCT
TCGCTCCTGCGGCTGGCTGGACGGAAGAGACCTGCAAAGTTAGCACCATG
GTGTTCCGGACACTTCTCGCCGTGTTTGCCACTGTGGCAGCGGCTCAAGG
GCAAAGTTGCGTCTTCCCGTTCACCTATCATGGCGGCACCTTTAACAGCT
GCACCTCTGTTGACTCGGATGTTGCGTGGTGCTCAACAGACGCCGTGTAC
GTCGGAAACTACGTCGACTGCGACGAACGCTACTGTACGTTCCCGTTCAC
GTACCACGGGATGACGTTCACGACCTGCACCATGTATGACGACGACCGCC
CCTGGTGTTCCATCTCACCGCAGTACGGGTCAGACCACGTGTACTGCAGC
GACGGCGCAGCCGTGCTTAGCGTGGACGCAGAAGTTGACAAACCAGGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97390gene:BL97390Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97390_cuf0transcript:BL97390_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97390_cuf0-E1BL97390_cuf0-E1-1564476830-267535Branchiostoma lanceolatumexon
BL97390_cuf0-E2BL97390_cuf0-E2-1564476830-267537Branchiostoma lanceolatumexon
BL97390_cuf0-E3BL97390_cuf0-E3-1564476830-267539Branchiostoma lanceolatumexon
BL97390_cuf0-E4BL97390_cuf0-E4-1564476830-267541Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000073genomeSc0000073:1073197..1075077 +
Properties
Property NameValue
Transcript idBL97390_cuf0
Biotypeprotein_coding