transcript:BL97389_cuf11 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97389_cuf11
Unique Nametranscript:BL97389_cuf11
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97389_cuf11

>transcript:BL97389_cuf11-protein ID=transcript:BL97389_cuf11-protein|Name=transcript:BL97389_cuf11|organism=Branchiostoma lanceolatum|type=polypeptide|length=171bp
VKSASCLLLALCRRERRVSPVFKRGEDLSAMFPCLHSVLTTFLIQCALFP
TFGDGSTESGTDRQELNMDWNNTTKPCMLRDGRTTIDIAVPINSAAGTPV
GSVFLTGRLDTDVTLAVTYNDQGSAKKKYLDLNVTSEHQAVLVLSEMGAK
EVKTNRLNNTMATLRCKVESS
Run BLAST on NCBI

mRNA from alignment at Sc0000034:1231543..1232818-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97389_cuf11 ID=transcript:BL97389_cuf11|Name=transcript:BL97389_cuf11|organism=Branchiostoma lanceolatum|type=mRNA|length=1276bp|location=Sequence derived from alignment at Sc0000034:1231543..1232818- (Branchiostoma lanceolatum)
AGTTAAGTCAGCGAGCTGCTTGTTACTTGCCCTGTGTAGGCGTGAGAGGA GAGTTTCCCCGGTGTTTAAGAGAGGAGAAGATCTTTCCGCGATGTTTCCC TGCCTTCACTCGGTGTTAACCACGTTCTTGATTCAGTGCGCGCTTTTTCC AACGTTCGGTGACGGCAGCACTGAGAGCGGGACCGACAGACAAGAACTTA ACATGGGTACGTTATGTTTGATTGTCAAAATGAGTTTTTTTTACTGTCTC GATTTAGTAATGTCTGCTAAAGCACTGACACATATATGATGATATATCGG CGTGTATATCTAGACGAAGAAAACGAAGATGGCTAGGCTACCAGAGGCGT TTGGTATAGTAGTCTTATATATTCTGTCGCTAAACTGTGTTATTTGTCAG GGCCATTCTAATACCGGTGACTATATCAGCTGTGTTTAAATTTTGTTGAA GCTCGCTTCAGCGTCTTTGCCGTGTAGTCGCCATTATCTAAAGTACCTTC ATGCCTTAGCAAGTTATAAAGACTACATTTTAAGACGATTCCTTTTTTTG CACATGCAGATTGGAATAACACAACAAAGCCGTGTATGCTGAGAGATGGA CGGACGACGATTGATATTGCAGTACCAATAAATTCCGCTGCAGGTGAATA ACGCTGTGTCCTTTGGTACTGCTGCTGTACATGTACTATCCACTGCTTCT ACTATATTCTACGTCATATGAAGTTATAAACATTGCCTGCTACATGATTT TATGTAGATTATGTCACATCATCCAATGACAGCTATTCCGATAAGCAACC GAATATCATGGCGCCAGGTTTGAAATATCATATCAAGAGAAACCTTGCTC TGACGAAGTACATTTTTTTATCTCTAGGAACACCTGTAGGTTCCGTTTTC CTTACAGGTAGACTTGACACAGACGTCACACTGGCCGTGACGTATAATGA CCAGGGAAGCGCGAAGAAAAAGTACTTGGACTTGAACGTGACGTCAGAGC ACCAGGCTGTCCTTGTTTTGTCGGAGATGGGAGCGAAAGAGGTCAAAACA AACCGACTCAACAACACAATGGTCAGTAGAAATTTCACTTTCTTCCAGTA CTCGATATTTCCAACATTTCAACTACGGATTTAATCTGTGAAGTACATTT TGTAAAAATAATGAGATGTCGTATTGAACAATAGAAATGAACCACCCTGA ACAACAGAAATGAAGAGCTTTTACTGTATTTTGTGCCTTGTACAGGCGAC CCTCAGATGTAAGGTGGAAAGTAGTG

Coding sequence (CDS) from alignment at Sc0000034:1231543..1232818-

>transcript:BL97389_cuf11 ID=transcript:BL97389_cuf11|Name=transcript:BL97389_cuf11|organism=Branchiostoma lanceolatum|type=CDS|length=2052bp|location=Sequence derived from alignment at Sc0000034:1231543..1232818- (Branchiostoma lanceolatum)
GTTAAGTCAGCGAGCTGCTTGTTACTTGCCCTGTGTAGGCGTGAGAGGAG
AGTTTCCCCGGTGTTTAAGAGAGGAGAAGATCTTTCCGCGATGTTTCCCT
GCCTTCACTCGGTGTTAACCACGTTCTTGATTCAGTGCGCGCTTTTTCCA
ACGTTCGGTGACGGCAGCACTGAGAGCGGGACCGACAGACAAGAACTTAA
CATGGATTGGAATAACACAACAAAGCCGTGTATGCTGAGAGATGGACGGA
CGACGATTGATATTGCAGTACCAATAAATTCCGCTGCAGGAACACCTGTA
GGTTCCGTTTTCCTTACAGGTAGACTTGACACAGACGTCACACTGGCCGT
GACGTATAATGACCAGGGAAGCGCGAAGAAAAAGTACTTGGACTTGAACG
TGACGTCAGAGCACCAGGCTGTCCTTGTTTTGTCGGAGATGGGAGCGAAA
GAGGTCAAAACAAACCGACTCAACAACACAATGGCGACCCTCAGATGTAA
GGTGGAAAGTAGTGTTAAGTCAGCGAGCTGCTTGTTACTTGCCCTGTGTA
GGCGTGAGAGGAGAGTTTCCCCGGTGTTTAAGAGAGGAGAAGATCTTTCC
GCGATGTTTCCCTGCCTTCACTCGGTGTTAACCACGTTCTTGATTCAGTG
CGCGCTTTTTCCAACGTTCGGTGACGGCAGCACTGAGAGCGGGACCGACA
GACAAGAACTTAACATGGATTGGAATAACACAACAAAGCCGTGTATGCTG
AGAGATGGACGGACGACGATTGATATTGCAGTACCAATAAATTCCGCTGC
AGGAACACCTGTAGGTTCCGTTTTCCTTACAGGTAGACTTGACACAGACG
TCACACTGGCCGTGACGTATAATGACCAGGGAAGCGCGAAGAAAAAGTAC
TTGGACTTGAACGTGACGTCAGAGCACCAGGCTGTCCTTGTTTTGTCGGA
GATGGGAGCGAAAGAGGTCAAAACAAACCGACTCAACAACACAATGGCGA
CCCTCAGATGTAAGGTGGAAAGTAGTGTTAAGTCAGCGAGCTGCTTGTTA
CTTGCCCTGTGTAGGCGTGAGAGGAGAGTTTCCCCGGTGTTTAAGAGAGG
AGAAGATCTTTCCGCGATGTTTCCCTGCCTTCACTCGGTGTTAACCACGT
TCTTGATTCAGTGCGCGCTTTTTCCAACGTTCGGTGACGGCAGCACTGAG
AGCGGGACCGACAGACAAGAACTTAACATGGATTGGAATAACACAACAAA
GCCGTGTATGCTGAGAGATGGACGGACGACGATTGATATTGCAGTACCAA
TAAATTCCGCTGCAGGAACACCTGTAGGTTCCGTTTTCCTTACAGGTAGA
CTTGACACAGACGTCACACTGGCCGTGACGTATAATGACCAGGGAAGCGC
GAAGAAAAAGTACTTGGACTTGAACGTGACGTCAGAGCACCAGGCTGTCC
TTGTTTTGTCGGAGATGGGAGCGAAAGAGGTCAAAACAAACCGACTCAAC
AACACAATGGCGACCCTCAGATGTAAGGTGGAAAGTAGTGTTAAGTCAGC
GAGCTGCTTGTTACTTGCCCTGTGTAGGCGTGAGAGGAGAGTTTCCCCGG
TGTTTAAGAGAGGAGAAGATCTTTCCGCGATGTTTCCCTGCCTTCACTCG
GTGTTAACCACGTTCTTGATTCAGTGCGCGCTTTTTCCAACGTTCGGTGA
CGGCAGCACTGAGAGCGGGACCGACAGACAAGAACTTAACATGGATTGGA
ATAACACAACAAAGCCGTGTATGCTGAGAGATGGACGGACGACGATTGAT
ATTGCAGTACCAATAAATTCCGCTGCAGGAACACCTGTAGGTTCCGTTTT
CCTTACAGGTAGACTTGACACAGACGTCACACTGGCCGTGACGTATAATG
ACCAGGGAAGCGCGAAGAAAAAGTACTTGGACTTGAACGTGACGTCAGAG
CACCAGGCTGTCCTTGTTTTGTCGGAGATGGGAGCGAAAGAGGTCAAAAC
AAACCGACTCAACAACACAATGGCGACCCTCAGATGTAAGGTGGAAAGTA
GT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97389gene:BL97389Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97389_cuf11transcript:BL97389_cuf11-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97389_cuf11-E1BL97389_cuf11-E1-1564476830-186556Branchiostoma lanceolatumexon
BL97389_cuf11-E2BL97389_cuf11-E2-1564476830-186553Branchiostoma lanceolatumexon
BL97389_cuf11-E3BL97389_cuf11-E3-1564476830-186551Branchiostoma lanceolatumexon
BL97389_cuf11-E4BL97389_cuf11-E4-1564476830-186549Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000034genomeSc0000034:1231543..1232818 -
Properties
Property NameValue
Transcript idBL97389_cuf11
Biotypeprotein_coding