Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

transcript:BL97383_cuf25 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97383_cuf25
Unique Nametranscript:BL97383_cuf25
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97383_cuf25

>transcript:BL97383_cuf25-protein ID=transcript:BL97383_cuf25-protein|Name=transcript:BL97383_cuf25|organism=Branchiostoma lanceolatum|type=polypeptide|length=124bp
NQYNCTCNPGWEGVHCEINTDECASDPCQNNATCHDEVNQYWCECGPGWN
GTHCEINVDECVSEPCQNNATCHDHINYYTCECVGGWQGINCDDNNNECG
SNPCQNNATCHDLVDSYTCECGPG
Run BLAST on NCBI

mRNA from alignment at Sc0000034:358256..359521-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97383_cuf25 ID=transcript:BL97383_cuf25|Name=transcript:BL97383_cuf25|organism=Branchiostoma lanceolatum|type=mRNA|length=1266bp|location=Sequence derived from alignment at Sc0000034:358256..359521- (Branchiostoma lanceolatum)
TCAATCAGTACAACTGCACATGTAACCCCGGATGGGAAGGTGTCCATTGT GAGATAAGTATGTTGCATTTAATGATATTGATGCTACATTTCCCATGCAT GTCACACACCGGCATCTTTATGCTGTGTGTAAAGTACATAGGTTTGATTG TCTAATTGAATGTGTTTTAAAGTGTTTCATTATTTTCAGACACGGACGAA TGTGCATCAGACCCCTGCCAGAATAATGCCACTTGCCATGATGAAGTGAA TCAGTACTGGTGTGAATGTGGCCCTGGATGGAATGGAACTCATTGTGAAA TCAGTACGTTTTGTCTTTCTTCATATCCATTCAATCCATTGCACCTTTTA CAATATGGTAATGGAATTAGTGACAGTGAGTGATATGCATATAAGATAAA TGGACTGCTACACAAATTGAGGTATTGAAGCACCAAAATGAAATGCTCTT GACTATCTGTAGATGCCCAGATCTGTTAAGGTTCAAAACTTTTCCTAGAC TAGTGATTGTGACAATAGAATTATCCAACTCACGAATACAATGTTTTTTC ACAGGGAAGCTGTTTATTATCATATATTAGCCATGAGACTTATGTAACAG AAACACAATCAGCTTGTAGTTTTTAAACAATAGCTTTCTGTGCCAATTAA CTAACATGCAATGAATTCTGCTCATGGACCACCAANCTGCTCAAGGACCA CCAATGTGTTGTTGTTTTTCAGATGTCGATGAGTGTGTGTCAGAGCCATG TCAGAACAACGCCACCTGTCACGACCACATCAACTACTACACCTGCGAAT GTGTGGGAGGGTGGCAGGGCATCAATTGCGATGACAGTATGTTTCTGAAG AGGAAATAGAAAAAAGCTAACAACAAAAAAGAGATAAAAGAAAAGTGGAT AAAGGAACAAAGTCTAGAAAGCAACAATTGATTATGATCAGTATAAAAGT AGCAGAGCTGAGTAGAAAGTTGAACATATAGCTAGGCATGTTTGACTTGG CATGCATGTGTCCAGTTGTAAATGTATTGTTAATGCATGATCTGAGATCA ATGTTTGATATTTCAGCAATTTGCACTTCCATGCAGTGTTTGAACAAAAG TCAGGTACATGTACATGTATCTTAATGGACAAGTAATGTATTTTTTGTTG TGATTAATCTGCTACTTTGTAACTCAGATAACAACGAATGTGGGTCCAAC CCGTGCCAGAACAACGCCACCTGTCATGATCTTGTGGACTCCTACACATG CGAGTGTGGGCCTGGT

Coding sequence (CDS) from alignment at Sc0000034:358256..359521-

>transcript:BL97383_cuf25 ID=transcript:BL97383_cuf25|Name=transcript:BL97383_cuf25|organism=Branchiostoma lanceolatum|type=CDS|length=1488bp|location=Sequence derived from alignment at Sc0000034:358256..359521- (Branchiostoma lanceolatum)
AATCAGTACAACTGCACATGTAACCCCGGATGGGAAGGTGTCCATTGTGA
GATAAACACGGACGAATGTGCATCAGACCCCTGCCAGAATAATGCCACTT
GCCATGATGAAGTGAATCAGTACTGGTGTGAATGTGGCCCTGGATGGAAT
GGAACTCATTGTGAAATCAATGTCGATGAGTGTGTGTCAGAGCCATGTCA
GAACAACGCCACCTGTCACGACCACATCAACTACTACACCTGCGAATGTG
TGGGAGGGTGGCAGGGCATCAATTGCGATGACAATAACAACGAATGTGGG
TCCAACCCGTGCCAGAACAACGCCACCTGTCATGATCTTGTGGACTCCTA
CACATGCGAGTGTGGGCCTGGTAATCAGTACAACTGCACATGTAACCCCG
GATGGGAAGGTGTCCATTGTGAGATAAACACGGACGAATGTGCATCAGAC
CCCTGCCAGAATAATGCCACTTGCCATGATGAAGTGAATCAGTACTGGTG
TGAATGTGGCCCTGGATGGAATGGAACTCATTGTGAAATCAATGTCGATG
AGTGTGTGTCAGAGCCATGTCAGAACAACGCCACCTGTCACGACCACATC
AACTACTACACCTGCGAATGTGTGGGAGGGTGGCAGGGCATCAATTGCGA
TGACAATAACAACGAATGTGGGTCCAACCCGTGCCAGAACAACGCCACCT
GTCATGATCTTGTGGACTCCTACACATGCGAGTGTGGGCCTGGTAATCAG
TACAACTGCACATGTAACCCCGGATGGGAAGGTGTCCATTGTGAGATAAA
CACGGACGAATGTGCATCAGACCCCTGCCAGAATAATGCCACTTGCCATG
ATGAAGTGAATCAGTACTGGTGTGAATGTGGCCCTGGATGGAATGGAACT
CATTGTGAAATCAATGTCGATGAGTGTGTGTCAGAGCCATGTCAGAACAA
CGCCACCTGTCACGACCACATCAACTACTACACCTGCGAATGTGTGGGAG
GGTGGCAGGGCATCAATTGCGATGACAATAACAACGAATGTGGGTCCAAC
CCGTGCCAGAACAACGCCACCTGTCATGATCTTGTGGACTCCTACACATG
CGAGTGTGGGCCTGGTAATCAGTACAACTGCACATGTAACCCCGGATGGG
AAGGTGTCCATTGTGAGATAAACACGGACGAATGTGCATCAGACCCCTGC
CAGAATAATGCCACTTGCCATGATGAAGTGAATCAGTACTGGTGTGAATG
TGGCCCTGGATGGAATGGAACTCATTGTGAAATCAATGTCGATGAGTGTG
TGTCAGAGCCATGTCAGAACAACGCCACCTGTCACGACCACATCAACTAC
TACACCTGCGAATGTGTGGGAGGGTGGCAGGGCATCAATTGCGATGACAA
TAACAACGAATGTGGGTCCAACCCGTGCCAGAACAACGCCACCTGTCATG
ATCTTGTGGACTCCTACACATGCGAGTGTGGGCCTGGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97383gene:BL97383Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97383_cuf25transcript:BL97383_cuf25-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97383_cuf25-E1BL97383_cuf25-E1-1564476830-185759Branchiostoma lanceolatumexon
BL97383_cuf25-E2BL97383_cuf25-E2-1564476830-185756Branchiostoma lanceolatumexon
BL97383_cuf25-E3BL97383_cuf25-E3-1564476830-185754Branchiostoma lanceolatumexon
BL97383_cuf25-E4BL97383_cuf25-E4-1564476830-185752Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000034genomeSc0000034:358256..359521 -
Properties
Property NameValue
Transcript idBL97383_cuf25
Biotypeprotein_coding