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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97381_cuf2 >transcript:BL97381_cuf2-protein ID=transcript:BL97381_cuf2-protein|Name=transcript:BL97381_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=214bp
PDQEWGYCDVPACSGQAGGCLESERQCWDGLCIPEEYWCDGEFFDCQEAE
DEFTCGGSWLQNSPDWAIDATPTLWPDTSGPDKVLDSEEGSFWSPSGPGP
WYIIFDFLGPYTFSWMGITNYGDITHDITAFKFQTSASSDPYIWIDALDF
NESSYQLPVWFVVGGFNGTSRFWRLFITATGPDNSPPWLVDVGFYGIEAD
PGSIQCAESERQCP Run BLAST on NCBI mRNA from alignment at Sc0000225:203020..209382- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97381_cuf2 ID=transcript:BL97381_cuf2|Name=transcript:BL97381_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=6363bp|location=Sequence derived from alignment at Sc0000225:203020..209382- (Branchiostoma lanceolatum)
TCCCGACCAGGAATGGGGATATTGTGACGTGCCAGCATGTTCTGGTAAGG
CCTGAACCTTTAGAGGTTAAGGAGGGGTAGTATTAGCATGCAAGCATTCC
TTTATTGCGCATAAACATTGCGCGGTAATATTGTATTGACTGATTATTTA
TTGATATCCGGGCAATAATTAACATGTATCAAACATATCTCGACATGAAT
TAACGGACTAGGGTGAGAGGGTGTCATCTTCAAGACTCCTTTAAAGTGGA
ATTACAAGGAAATTGGTTTTGTGTCAGACATCGCATTTTGGGCATGTGAG
AATAAAAATACCGATTAATTAGGCCCAAAGGGTATATCACAATGGATTGG
ACAGTCGTCGAACATGGCGGTCATGAAGGGTTGACACTTCTAAGCCATAT
AAAAGAGCACTCAGAACTACAGCCCTATATATGTTAAGCTTCGTCTTCAG
TCTTATAGGTTTTAAATTCCACAGCCGATCCTTTAGGCGTCCAAATGCAG
TTGAGGTGGCCCACACCCGTGTATCTATCTCACTGTCCATGGAATTGTCG
TTTGTCACAGTAGATCGAAGGTATGTGAAAGTTGTCGCTTTAACGAGGGG
GTTTCCGCCCATCAGGACGCGTGGTGGGATCTGCGGTTCTCAGGCACCGG
TTGGTAGAGAACTTCAGTTTTCTTGGTATTAAAGGACATGACATGCCGTA
AGCTCTGGTCGCTTCTACAAACGTCTCCAACAGCCGCTGGATACCGCCCC
GTGCAGGTGCTACCAGAGCAGACTCGTCGGCGTAGAAGAGCTCAATGATG
CACATTACCAGTACATGACGCTGGGATTTCAGTCGTGCAAGGTTGAGGAG
GCCACCGTCCGATCGAGTTGGGATGGAAATTCCTTCCGGCTTATCGTCCG
ACACTCCTTCAACTACGCCAGCTAGAATTCAAAAACAATGCGATCAAAGT
GGGAGCTAAATAGATATACATCCCTGCTTGACACCATGAAGGACCTGGAA
GAAGTCAGAGGCTTCGCCGTTGACAGTCACTGTGGCTCGGATATCTGTGT
GGAAGGCTTTGATGACACCAAACAACTTCGGAGGGGATCCAAACTTATCC
AGAATGCTCCACAAGGAATCCCTTCCCACAGAGTCAAAAGCATTTGAAAA
TCAATAAAGACGATGTACAGTGGCATTCTCTGTTCAACAGCCTTTTCTTG
AAGTTGTCTCAGTACAAAGATCATATCTGTGGTGCTGCGGCCACTTACTT
ACTTTATTACTTAGTATATATGAATTACTTAATATACATACTTACATCAT
CACACAATCTCGTACTGGCAAATCGTTTGCTCAACTTTTAGGGAACAGAT
ATTTTTTTAAATCTTGTCTTGCAGACGTCACAAAAGATCAATAGAAGGAA
CGTAATATTGTTTACGATTTTCTGACACTGATATTGCCATAAAACTCCCT
TAAGCTTCGTATTTTCAGATCCAGGAAGTATTAAGTGTGTGCAGAATGAA
CGCCAGTGTTCCAACGGGTGGTGCATTCCTTGATCTTTCTGGTGTGGTAG
TGACTTTAATTCGTATATATTAGATAGGAAATTATACCACCACATTTGTT
ATAGCGACAAAGCAGTCCATTTTGCCATTGTTTCTTTTGACAATCTCCAT
TTTCCCAGGCCAAGCTGGAGGGTGCCTGGAAAGTGAACGCCAGTGTAATG
ACGGTTTATGCATCCCTGAAGAATACTGGTGTGATGGACAGGTTCTGGAC
TGTCAGGAAGCAGAGGATGAGTTCTCTTGTGGGGGTGAGCAACCATGCCT
TCCAATTTTATAAAAAAAAGTACATGTCACATAACCTTTCCCAGAAGAGT
ACATTTCATAAATGACCCAATCGTAAAGCGTTTCTTTGACATCTATATTG
ACTCGATTGATAATACATGTTTTAACTTTATTTACATATTCAAGGAGGAT
ATACTGTGAATATGTAAATTGCCTTAAAGACCCGAGTAAAACCTATATAA
AGGCCCGATAATGTAAACTTGAGACTTCAGTGTGCTACTGGCTATTACCC
ATTCACCACAGTACACAAAAGTGGAGGCCTGGCTGAGACAAATTACTATG
TACAAGTTACTCTTAAAGTTATGTTTGAAATAACAATAGATATCAGAAAT
TAGAATAGGGCTACACCTAAAGAAGATAGCTTGAAGGTCACATAGCCCTG
AAATAAACATATAGGCTAGTCTTCCTTTCCTTTTTCAATATTCTACATCT
CAGGACGAAGCTCCGTGCAAAAATGCTTTTTTCCTTGAACTATTTTATTC
CTAGAACTATATCTTTATGGAACACACTTTCTCGTGATCGCGTCCTTGAT
ATAATCTTAAACCTTTCAACACAAAGGTTAACAGACACTTTCAGTCTCAT
CATAATACAATTAGTGTGACCCAAAAGAATAGCGTCAGATTCTTTTTATT
TTCCCTTAGACTGCCTGACAGGGAATGGAGCATTTTACCGTGGAACAGTC
TTTGTAACTGAAACAGGCCTGATGTGTCAACATTGGGACAGTCAGACAGC
CCATGATTACAACTATACACCCGCTGATTATCCGTCATCTGGATTGGAGC
AGAACTACTGCCGGAATCCGGGGGGCGACCCCGGAGGAGTTTGGTGCTTC
ACCACGGATCCCGACCAGGAATGGGAGTATTGTGACGTGCCAGCATGTTC
CGGTAAGGCCTGAACCTTTAGAGCTTAAGAGGGGGTTATATTAGCATGCA
ATCATTCTTTTATTGCACATAGACATTGCGCAGTAATACTGTATTGACTG
ATTATCTATTGATATCCGGGCAATAATAAACATGCATCAAACATGTCTCG
ACATGAATTAACAGACTAGGGCGAGAGGGTGCCCCTTCAATACTCCATTG
AAGTGGAATTACAAGGAAATTGGTTTTATTTCAGACATCGCATTCTGGGC
ATGTGAGAATAATAATGCCTTTGAATTAGGCCCAGGGGGTTTATCACCAT
GGATTGGACAGTCGTCGAACATGACGGGCATGAAGGGTTGACACGTCTAG
GCCACATAGGAGAGCACTCAGAACTACAGCCCTATATAAGTTTAGCTTCG
TCTTCAGTCGTATAGGCTTTACAGTCCACAGCCGATCCTTTAGGCATCCA
AATGCAGTTGAGCTGGCCCTCAACCGCGCATATATCTCACTGTCCATGGA
ATTGTCGTTTGCCATAGTAGATCCAAGGTAAGTGAAAGTTTTCGCTTCAA
CGAGTTGGGTTCCACCCATCAAGACCCGTGGTGGGATGTGCGGATCTCAG
GCACCGGCTGGTAGAGAACTTCAGTTTTTTTCGTGTTTATGGACATCGCA
TGCTGTAAGCTCTGGTCGCTTCTACTAACGTCTCCAACAGCCGCTGCATA
CCGTCCTGTGCATGTTCCATCAGAGCAGAATCGTCGGCGTAGAAGAGCTC
AATGATGAACATTGACAGTACATGACGCTGGGATTTCAGACGTGTAAGGT
TGAGGAGGCCACCCTTCCGATCGAGTTCGGATGTAAATTCCTTCCAGCTT
ATCGTCCGACATTTCTTCAACTACGCCAGCTAGAAACAGTGCGAACAAAG
TGGGAGCTAATATACATCTCTGCTTGACACCATGAAGGACCTGGAAGAAG
TCAGAGACCTCGCCGTTGACAGTCACTGTGGCTCGCATATCTGTATGGAA
GGCTTTGATGACACCAAACAGCTTCGGAGGGCATCCAAACTTTTCCAGAA
TGCGCCACAAGGCATCCCTTCCCACAGAGTCAAAAGCCTTTGAAAAATCA
ATTAAGACGATGTACAGTGGCATTCTCTGTTCAACAGCCTTTTCTTGAAG
TTGTCTCAGTACAAATATCATATCTGTGGTGCCGCGGCCACTTACCTACT
TAATTACTTAGTATATATACTTACGTCGTCCCACAATTTCGTGCTGGCAA
ATTGTTTGCAAAACTTTTAGGGAACATATATTTCCAAAAATCTTGTCTGG
CAGACGTCAGAAAAGATCAAAAGAAGGAACGTAATATTGTTTACGATTTC
CTGACACAGATATATTGCCATAAAACTCCCTTAAGCTTCGTACTTTCAGA
TCCAGGAAGTATTAAGTGTGTGCAGAATGAACACCAGTGATCCGACGGGT
GGTGCATTCCTTATTCTTTCTGGTGTGGTAGTGACTTTAATTCGTATATA
TTAGATAGGAAATTATACCACCACATTCGTTATGGCGACAAAGCAGTCCA
TTTTGCCATCGTTTCTTCTGACAATCTCTATTTTCCCAGGCCAAGCTGGA
GGGTGCCTGGAAAGTGAACGCCAGTGTTGGGACGGTTTATGCATCCCTGA
AGAATACTGGTGTGACGGAGAGTTTTTCGACTGTCAGGAAGCAGAGGATG
AGTTCACTTGTGGGGGTGAGCAACCATGCCTTCCAATTTTATAAAAAAAG
TACATGTCACATTACCTTTGCCAGAAGAGTACATTTCACAATGGCCCAAT
CGTAAAGCGTATCTTTGACATATATATTGACTGGATTGATAATACAGGTT
TTGACTTTATTTACCCATTCAAGGAGGATATACTGTGAATATGTAAATTC
CCTTTAAGACCCAACTAAAACCTATATAAAAGCCCGATAATGTAAACTAT
AGAATTCAGTGTGCTACTGGCTATTACCCATTCACCACATTACACAAAAG
TGGAGGCCGGCTGAGACAATTTATCATGTACAAGTTACTATTAAAGTTAT
GTTTGAAATAACAACAGATATCAGAAATTAGAATATGTGTACACATGAAG
AAGATAGCTTGAAGGACACTTAGCGCTGAAGTAAACTAATGGCAACGCTG
ACTTGTGATTAAGTTTGAGACAATGGGTAGCAAATATGTTTCGAGTTCTA
CAGAGCCAAGTTAAAACTGGTTTCTTAGACTACAAGACACTGAAATTAAA
AGTCATATTTCTAGAGACACGACTACTGAAAGCTAATGTGTGCGGAATAC
ATTTTCACGTTTGAAATGTAGATAGAATTAGACACTCTTACACTGCATTG
ACAGAGTTGATTTGAAAATTTGGACAAGGTTGATTTTCTAAAACAGAAAT
GTGTATATAACATTGACTAGTTTATCCAAGGGATCCTATCTAATTTAAAC
TTACTTGGATTATGTAACCTTTGTACAGTTATCTGAGCCATTCTAAATGG
TTTGATGATGTTCCTAGGAAAACGTGCACTGAATTTCTTTTGAATTTTCT
AACCGTTATTATGGTAATCAGACCCTGGCATTGTTCTTGGCTGGCGGACA
CTGAGTTAATTAGTTTCTATGGTTATGGAGGTCACTTCACCCCTCAAACA
GCTGTACAGGTTTCTTATTGGAATTTCCATGGGCAAGAGAGCAATCCCTT
TAAACATTTATTTCCATACAATTTCCCATAGGTTCGTGGCTGCAAAATTC
TCCTGATTGGGCAATCGATGCAACACCAACACTATGGCCCGATACGTCTG
GACCAGACAAGGTTCTTGACAGTGAGGAAGGTTCCTTCTGGAGCCCGAGC
GGTCCAGGCCCATGGTACATCATCTTCGACTTCCTGGGACCCTATACGTT
TTCTTGGATGGGCATCACTAACTATGGGGACATAACCCATGACATTACAG
CATTCAAGTTTCAAACGTCGGCAAGTTCTGATCCCTACATCTGGATTGAC
GCACTGGATTTCAACGAATCCTCCTACCAGTTGCCTGTGTGGTTCGTAGT
TGGAGGTTTCAATGGCACCAGTCGTTTCTGGCGACTGTTCATCACAGCAA
CAGGCCCGGACAACTCTCCGCCTTGGTTAGTCGACGTGGGCTTTTATGGA
ATAGAAGCAGGTAGGTCGCCTTTTGAGAATTTCATTGGGTCCTAAACAAT
GCATTAAAACTGCTCCTTATGAGGACTAGTATGTGAAAATACCATACATC
AGAACATATGTTAATGTCAAATGTACATGTATTAACAAGTACGGATGGTT
TCCTATTAAGTATTAAGAGCATCTAGGCACGTACTTGTTGGGTGTGTTGT
CTTAAAAGCGACAAACTAAGACTCTCCATATGTGGAGTATTTGTACTTTT
CAAGTTATCAATTTATATAATTTATACCGTTCGTGCAGTACTTATTGGCG
TCACCACATATTTTGTACGGAGAAAATAGTTTGCTAAATTAAAAAGAAAC
CCACATAAATCGGGTCTGGTAACGGTCACATATTGGTCCATAAAATTTAC
ATCCTTTTATATGTAATGTTGTGACAAGGATATATTGCTATAAGGCTCCC
CAATCTTTGTACATTAAGATCCAGGAAGTATTCAGTGTGCGGAGAGTGAA
CGCCAGTGCCCCA Coding sequence (CDS) from alignment at Sc0000225:203020..209382- >transcript:BL97381_cuf2 ID=transcript:BL97381_cuf2|Name=transcript:BL97381_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2568bp|location=Sequence derived from alignment at Sc0000225:203020..209382- (Branchiostoma lanceolatum)
CCCGACCAGGAATGGGGATATTGTGACGTGCCAGCATGTTCTGGCCAAGC
TGGAGGGTGCCTGGAAAGTGAACGCCAGTGTTGGGACGGTTTATGCATCC
CTGAAGAATACTGGTGTGACGGAGAGTTTTTCGACTGTCAGGAAGCAGAG
GATGAGTTCACTTGTGGGGGTTCGTGGCTGCAAAATTCTCCTGATTGGGC
AATCGATGCAACACCAACACTATGGCCCGATACGTCTGGACCAGACAAGG
TTCTTGACAGTGAGGAAGGTTCCTTCTGGAGCCCGAGCGGTCCAGGCCCA
TGGTACATCATCTTCGACTTCCTGGGACCCTATACGTTTTCTTGGATGGG
CATCACTAACTATGGGGACATAACCCATGACATTACAGCATTCAAGTTTC
AAACGTCGGCAAGTTCTGATCCCTACATCTGGATTGACGCACTGGATTTC
AACGAATCCTCCTACCAGTTGCCTGTGTGGTTCGTAGTTGGAGGTTTCAA
TGGCACCAGTCGTTTCTGGCGACTGTTCATCACAGCAACAGGCCCGGACA
ACTCTCCGCCTTGGTTAGTCGACGTGGGCTTTTATGGAATAGAAGCAGAT
CCAGGAAGTATTCAGTGTGCGGAGAGTGAACGCCAGTGCCCCCCCGACCA
GGAATGGGGATATTGTGACGTGCCAGCATGTTCTGGCCAAGCTGGAGGGT
GCCTGGAAAGTGAACGCCAGTGTTGGGACGGTTTATGCATCCCTGAAGAA
TACTGGTGTGACGGAGAGTTTTTCGACTGTCAGGAAGCAGAGGATGAGTT
CACTTGTGGGGGTTCGTGGCTGCAAAATTCTCCTGATTGGGCAATCGATG
CAACACCAACACTATGGCCCGATACGTCTGGACCAGACAAGGTTCTTGAC
AGTGAGGAAGGTTCCTTCTGGAGCCCGAGCGGTCCAGGCCCATGGTACAT
CATCTTCGACTTCCTGGGACCCTATACGTTTTCTTGGATGGGCATCACTA
ACTATGGGGACATAACCCATGACATTACAGCATTCAAGTTTCAAACGTCG
GCAAGTTCTGATCCCTACATCTGGATTGACGCACTGGATTTCAACGAATC
CTCCTACCAGTTGCCTGTGTGGTTCGTAGTTGGAGGTTTCAATGGCACCA
GTCGTTTCTGGCGACTGTTCATCACAGCAACAGGCCCGGACAACTCTCCG
CCTTGGTTAGTCGACGTGGGCTTTTATGGAATAGAAGCAGATCCAGGAAG
TATTCAGTGTGCGGAGAGTGAACGCCAGTGCCCCCCCGACCAGGAATGGG
GATATTGTGACGTGCCAGCATGTTCTGGCCAAGCTGGAGGGTGCCTGGAA
AGTGAACGCCAGTGTTGGGACGGTTTATGCATCCCTGAAGAATACTGGTG
TGACGGAGAGTTTTTCGACTGTCAGGAAGCAGAGGATGAGTTCACTTGTG
GGGGTTCGTGGCTGCAAAATTCTCCTGATTGGGCAATCGATGCAACACCA
ACACTATGGCCCGATACGTCTGGACCAGACAAGGTTCTTGACAGTGAGGA
AGGTTCCTTCTGGAGCCCGAGCGGTCCAGGCCCATGGTACATCATCTTCG
ACTTCCTGGGACCCTATACGTTTTCTTGGATGGGCATCACTAACTATGGG
GACATAACCCATGACATTACAGCATTCAAGTTTCAAACGTCGGCAAGTTC
TGATCCCTACATCTGGATTGACGCACTGGATTTCAACGAATCCTCCTACC
AGTTGCCTGTGTGGTTCGTAGTTGGAGGTTTCAATGGCACCAGTCGTTTC
TGGCGACTGTTCATCACAGCAACAGGCCCGGACAACTCTCCGCCTTGGTT
AGTCGACGTGGGCTTTTATGGAATAGAAGCAGATCCAGGAAGTATTCAGT
GTGCGGAGAGTGAACGCCAGTGCCCCCCCGACCAGGAATGGGGATATTGT
GACGTGCCAGCATGTTCTGGCCAAGCTGGAGGGTGCCTGGAAAGTGAACG
CCAGTGTTGGGACGGTTTATGCATCCCTGAAGAATACTGGTGTGACGGAG
AGTTTTTCGACTGTCAGGAAGCAGAGGATGAGTTCACTTGTGGGGGTTCG
TGGCTGCAAAATTCTCCTGATTGGGCAATCGATGCAACACCAACACTATG
GCCCGATACGTCTGGACCAGACAAGGTTCTTGACAGTGAGGAAGGTTCCT
TCTGGAGCCCGAGCGGTCCAGGCCCATGGTACATCATCTTCGACTTCCTG
GGACCCTATACGTTTTCTTGGATGGGCATCACTAACTATGGGGACATAAC
CCATGACATTACAGCATTCAAGTTTCAAACGTCGGCAAGTTCTGATCCCT
ACATCTGGATTGACGCACTGGATTTCAACGAATCCTCCTACCAGTTGCCT
GTGTGGTTCGTAGTTGGAGGTTTCAATGGCACCAGTCGTTTCTGGCGACT
GTTCATCACAGCAACAGGCCCGGACAACTCTCCGCCTTGGTTAGTCGACG
TGGGCTTTTATGGAATAGAAGCAGATCCAGGAAGTATTCAGTGTGCGGAG
AGTGAACGCCAGTGCCCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000225 | genome | Sc0000225:203020..209382 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97381_cuf2 |
| Biotype | protein_coding |
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