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transcript:BL97381_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97381_cuf2
Unique Nametranscript:BL97381_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97381_cuf2

>transcript:BL97381_cuf2-protein ID=transcript:BL97381_cuf2-protein|Name=transcript:BL97381_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=214bp
PDQEWGYCDVPACSGQAGGCLESERQCWDGLCIPEEYWCDGEFFDCQEAE
DEFTCGGSWLQNSPDWAIDATPTLWPDTSGPDKVLDSEEGSFWSPSGPGP
WYIIFDFLGPYTFSWMGITNYGDITHDITAFKFQTSASSDPYIWIDALDF
NESSYQLPVWFVVGGFNGTSRFWRLFITATGPDNSPPWLVDVGFYGIEAD
PGSIQCAESERQCP
Run BLAST on NCBI

mRNA from alignment at Sc0000225:203020..209382-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97381_cuf2 ID=transcript:BL97381_cuf2|Name=transcript:BL97381_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=6363bp|location=Sequence derived from alignment at Sc0000225:203020..209382- (Branchiostoma lanceolatum)
TCCCGACCAGGAATGGGGATATTGTGACGTGCCAGCATGTTCTGGTAAGG CCTGAACCTTTAGAGGTTAAGGAGGGGTAGTATTAGCATGCAAGCATTCC TTTATTGCGCATAAACATTGCGCGGTAATATTGTATTGACTGATTATTTA TTGATATCCGGGCAATAATTAACATGTATCAAACATATCTCGACATGAAT TAACGGACTAGGGTGAGAGGGTGTCATCTTCAAGACTCCTTTAAAGTGGA ATTACAAGGAAATTGGTTTTGTGTCAGACATCGCATTTTGGGCATGTGAG AATAAAAATACCGATTAATTAGGCCCAAAGGGTATATCACAATGGATTGG ACAGTCGTCGAACATGGCGGTCATGAAGGGTTGACACTTCTAAGCCATAT AAAAGAGCACTCAGAACTACAGCCCTATATATGTTAAGCTTCGTCTTCAG TCTTATAGGTTTTAAATTCCACAGCCGATCCTTTAGGCGTCCAAATGCAG TTGAGGTGGCCCACACCCGTGTATCTATCTCACTGTCCATGGAATTGTCG TTTGTCACAGTAGATCGAAGGTATGTGAAAGTTGTCGCTTTAACGAGGGG GTTTCCGCCCATCAGGACGCGTGGTGGGATCTGCGGTTCTCAGGCACCGG TTGGTAGAGAACTTCAGTTTTCTTGGTATTAAAGGACATGACATGCCGTA AGCTCTGGTCGCTTCTACAAACGTCTCCAACAGCCGCTGGATACCGCCCC GTGCAGGTGCTACCAGAGCAGACTCGTCGGCGTAGAAGAGCTCAATGATG CACATTACCAGTACATGACGCTGGGATTTCAGTCGTGCAAGGTTGAGGAG GCCACCGTCCGATCGAGTTGGGATGGAAATTCCTTCCGGCTTATCGTCCG ACACTCCTTCAACTACGCCAGCTAGAATTCAAAAACAATGCGATCAAAGT GGGAGCTAAATAGATATACATCCCTGCTTGACACCATGAAGGACCTGGAA GAAGTCAGAGGCTTCGCCGTTGACAGTCACTGTGGCTCGGATATCTGTGT GGAAGGCTTTGATGACACCAAACAACTTCGGAGGGGATCCAAACTTATCC AGAATGCTCCACAAGGAATCCCTTCCCACAGAGTCAAAAGCATTTGAAAA TCAATAAAGACGATGTACAGTGGCATTCTCTGTTCAACAGCCTTTTCTTG AAGTTGTCTCAGTACAAAGATCATATCTGTGGTGCTGCGGCCACTTACTT ACTTTATTACTTAGTATATATGAATTACTTAATATACATACTTACATCAT CACACAATCTCGTACTGGCAAATCGTTTGCTCAACTTTTAGGGAACAGAT ATTTTTTTAAATCTTGTCTTGCAGACGTCACAAAAGATCAATAGAAGGAA CGTAATATTGTTTACGATTTTCTGACACTGATATTGCCATAAAACTCCCT TAAGCTTCGTATTTTCAGATCCAGGAAGTATTAAGTGTGTGCAGAATGAA CGCCAGTGTTCCAACGGGTGGTGCATTCCTTGATCTTTCTGGTGTGGTAG TGACTTTAATTCGTATATATTAGATAGGAAATTATACCACCACATTTGTT ATAGCGACAAAGCAGTCCATTTTGCCATTGTTTCTTTTGACAATCTCCAT TTTCCCAGGCCAAGCTGGAGGGTGCCTGGAAAGTGAACGCCAGTGTAATG ACGGTTTATGCATCCCTGAAGAATACTGGTGTGATGGACAGGTTCTGGAC TGTCAGGAAGCAGAGGATGAGTTCTCTTGTGGGGGTGAGCAACCATGCCT TCCAATTTTATAAAAAAAAGTACATGTCACATAACCTTTCCCAGAAGAGT ACATTTCATAAATGACCCAATCGTAAAGCGTTTCTTTGACATCTATATTG ACTCGATTGATAATACATGTTTTAACTTTATTTACATATTCAAGGAGGAT ATACTGTGAATATGTAAATTGCCTTAAAGACCCGAGTAAAACCTATATAA AGGCCCGATAATGTAAACTTGAGACTTCAGTGTGCTACTGGCTATTACCC ATTCACCACAGTACACAAAAGTGGAGGCCTGGCTGAGACAAATTACTATG TACAAGTTACTCTTAAAGTTATGTTTGAAATAACAATAGATATCAGAAAT TAGAATAGGGCTACACCTAAAGAAGATAGCTTGAAGGTCACATAGCCCTG AAATAAACATATAGGCTAGTCTTCCTTTCCTTTTTCAATATTCTACATCT CAGGACGAAGCTCCGTGCAAAAATGCTTTTTTCCTTGAACTATTTTATTC CTAGAACTATATCTTTATGGAACACACTTTCTCGTGATCGCGTCCTTGAT ATAATCTTAAACCTTTCAACACAAAGGTTAACAGACACTTTCAGTCTCAT CATAATACAATTAGTGTGACCCAAAAGAATAGCGTCAGATTCTTTTTATT TTCCCTTAGACTGCCTGACAGGGAATGGAGCATTTTACCGTGGAACAGTC TTTGTAACTGAAACAGGCCTGATGTGTCAACATTGGGACAGTCAGACAGC CCATGATTACAACTATACACCCGCTGATTATCCGTCATCTGGATTGGAGC AGAACTACTGCCGGAATCCGGGGGGCGACCCCGGAGGAGTTTGGTGCTTC ACCACGGATCCCGACCAGGAATGGGAGTATTGTGACGTGCCAGCATGTTC CGGTAAGGCCTGAACCTTTAGAGCTTAAGAGGGGGTTATATTAGCATGCA ATCATTCTTTTATTGCACATAGACATTGCGCAGTAATACTGTATTGACTG ATTATCTATTGATATCCGGGCAATAATAAACATGCATCAAACATGTCTCG ACATGAATTAACAGACTAGGGCGAGAGGGTGCCCCTTCAATACTCCATTG AAGTGGAATTACAAGGAAATTGGTTTTATTTCAGACATCGCATTCTGGGC ATGTGAGAATAATAATGCCTTTGAATTAGGCCCAGGGGGTTTATCACCAT GGATTGGACAGTCGTCGAACATGACGGGCATGAAGGGTTGACACGTCTAG GCCACATAGGAGAGCACTCAGAACTACAGCCCTATATAAGTTTAGCTTCG TCTTCAGTCGTATAGGCTTTACAGTCCACAGCCGATCCTTTAGGCATCCA AATGCAGTTGAGCTGGCCCTCAACCGCGCATATATCTCACTGTCCATGGA ATTGTCGTTTGCCATAGTAGATCCAAGGTAAGTGAAAGTTTTCGCTTCAA CGAGTTGGGTTCCACCCATCAAGACCCGTGGTGGGATGTGCGGATCTCAG GCACCGGCTGGTAGAGAACTTCAGTTTTTTTCGTGTTTATGGACATCGCA TGCTGTAAGCTCTGGTCGCTTCTACTAACGTCTCCAACAGCCGCTGCATA CCGTCCTGTGCATGTTCCATCAGAGCAGAATCGTCGGCGTAGAAGAGCTC AATGATGAACATTGACAGTACATGACGCTGGGATTTCAGACGTGTAAGGT TGAGGAGGCCACCCTTCCGATCGAGTTCGGATGTAAATTCCTTCCAGCTT ATCGTCCGACATTTCTTCAACTACGCCAGCTAGAAACAGTGCGAACAAAG TGGGAGCTAATATACATCTCTGCTTGACACCATGAAGGACCTGGAAGAAG TCAGAGACCTCGCCGTTGACAGTCACTGTGGCTCGCATATCTGTATGGAA GGCTTTGATGACACCAAACAGCTTCGGAGGGCATCCAAACTTTTCCAGAA TGCGCCACAAGGCATCCCTTCCCACAGAGTCAAAAGCCTTTGAAAAATCA ATTAAGACGATGTACAGTGGCATTCTCTGTTCAACAGCCTTTTCTTGAAG TTGTCTCAGTACAAATATCATATCTGTGGTGCCGCGGCCACTTACCTACT TAATTACTTAGTATATATACTTACGTCGTCCCACAATTTCGTGCTGGCAA ATTGTTTGCAAAACTTTTAGGGAACATATATTTCCAAAAATCTTGTCTGG CAGACGTCAGAAAAGATCAAAAGAAGGAACGTAATATTGTTTACGATTTC CTGACACAGATATATTGCCATAAAACTCCCTTAAGCTTCGTACTTTCAGA TCCAGGAAGTATTAAGTGTGTGCAGAATGAACACCAGTGATCCGACGGGT GGTGCATTCCTTATTCTTTCTGGTGTGGTAGTGACTTTAATTCGTATATA TTAGATAGGAAATTATACCACCACATTCGTTATGGCGACAAAGCAGTCCA TTTTGCCATCGTTTCTTCTGACAATCTCTATTTTCCCAGGCCAAGCTGGA GGGTGCCTGGAAAGTGAACGCCAGTGTTGGGACGGTTTATGCATCCCTGA AGAATACTGGTGTGACGGAGAGTTTTTCGACTGTCAGGAAGCAGAGGATG AGTTCACTTGTGGGGGTGAGCAACCATGCCTTCCAATTTTATAAAAAAAG TACATGTCACATTACCTTTGCCAGAAGAGTACATTTCACAATGGCCCAAT CGTAAAGCGTATCTTTGACATATATATTGACTGGATTGATAATACAGGTT TTGACTTTATTTACCCATTCAAGGAGGATATACTGTGAATATGTAAATTC CCTTTAAGACCCAACTAAAACCTATATAAAAGCCCGATAATGTAAACTAT AGAATTCAGTGTGCTACTGGCTATTACCCATTCACCACATTACACAAAAG TGGAGGCCGGCTGAGACAATTTATCATGTACAAGTTACTATTAAAGTTAT GTTTGAAATAACAACAGATATCAGAAATTAGAATATGTGTACACATGAAG AAGATAGCTTGAAGGACACTTAGCGCTGAAGTAAACTAATGGCAACGCTG ACTTGTGATTAAGTTTGAGACAATGGGTAGCAAATATGTTTCGAGTTCTA CAGAGCCAAGTTAAAACTGGTTTCTTAGACTACAAGACACTGAAATTAAA AGTCATATTTCTAGAGACACGACTACTGAAAGCTAATGTGTGCGGAATAC ATTTTCACGTTTGAAATGTAGATAGAATTAGACACTCTTACACTGCATTG ACAGAGTTGATTTGAAAATTTGGACAAGGTTGATTTTCTAAAACAGAAAT GTGTATATAACATTGACTAGTTTATCCAAGGGATCCTATCTAATTTAAAC TTACTTGGATTATGTAACCTTTGTACAGTTATCTGAGCCATTCTAAATGG TTTGATGATGTTCCTAGGAAAACGTGCACTGAATTTCTTTTGAATTTTCT AACCGTTATTATGGTAATCAGACCCTGGCATTGTTCTTGGCTGGCGGACA CTGAGTTAATTAGTTTCTATGGTTATGGAGGTCACTTCACCCCTCAAACA GCTGTACAGGTTTCTTATTGGAATTTCCATGGGCAAGAGAGCAATCCCTT TAAACATTTATTTCCATACAATTTCCCATAGGTTCGTGGCTGCAAAATTC TCCTGATTGGGCAATCGATGCAACACCAACACTATGGCCCGATACGTCTG GACCAGACAAGGTTCTTGACAGTGAGGAAGGTTCCTTCTGGAGCCCGAGC GGTCCAGGCCCATGGTACATCATCTTCGACTTCCTGGGACCCTATACGTT TTCTTGGATGGGCATCACTAACTATGGGGACATAACCCATGACATTACAG CATTCAAGTTTCAAACGTCGGCAAGTTCTGATCCCTACATCTGGATTGAC GCACTGGATTTCAACGAATCCTCCTACCAGTTGCCTGTGTGGTTCGTAGT TGGAGGTTTCAATGGCACCAGTCGTTTCTGGCGACTGTTCATCACAGCAA CAGGCCCGGACAACTCTCCGCCTTGGTTAGTCGACGTGGGCTTTTATGGA ATAGAAGCAGGTAGGTCGCCTTTTGAGAATTTCATTGGGTCCTAAACAAT GCATTAAAACTGCTCCTTATGAGGACTAGTATGTGAAAATACCATACATC AGAACATATGTTAATGTCAAATGTACATGTATTAACAAGTACGGATGGTT TCCTATTAAGTATTAAGAGCATCTAGGCACGTACTTGTTGGGTGTGTTGT CTTAAAAGCGACAAACTAAGACTCTCCATATGTGGAGTATTTGTACTTTT CAAGTTATCAATTTATATAATTTATACCGTTCGTGCAGTACTTATTGGCG TCACCACATATTTTGTACGGAGAAAATAGTTTGCTAAATTAAAAAGAAAC CCACATAAATCGGGTCTGGTAACGGTCACATATTGGTCCATAAAATTTAC ATCCTTTTATATGTAATGTTGTGACAAGGATATATTGCTATAAGGCTCCC CAATCTTTGTACATTAAGATCCAGGAAGTATTCAGTGTGCGGAGAGTGAA CGCCAGTGCCCCA

Coding sequence (CDS) from alignment at Sc0000225:203020..209382-

>transcript:BL97381_cuf2 ID=transcript:BL97381_cuf2|Name=transcript:BL97381_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2568bp|location=Sequence derived from alignment at Sc0000225:203020..209382- (Branchiostoma lanceolatum)
CCCGACCAGGAATGGGGATATTGTGACGTGCCAGCATGTTCTGGCCAAGC
TGGAGGGTGCCTGGAAAGTGAACGCCAGTGTTGGGACGGTTTATGCATCC
CTGAAGAATACTGGTGTGACGGAGAGTTTTTCGACTGTCAGGAAGCAGAG
GATGAGTTCACTTGTGGGGGTTCGTGGCTGCAAAATTCTCCTGATTGGGC
AATCGATGCAACACCAACACTATGGCCCGATACGTCTGGACCAGACAAGG
TTCTTGACAGTGAGGAAGGTTCCTTCTGGAGCCCGAGCGGTCCAGGCCCA
TGGTACATCATCTTCGACTTCCTGGGACCCTATACGTTTTCTTGGATGGG
CATCACTAACTATGGGGACATAACCCATGACATTACAGCATTCAAGTTTC
AAACGTCGGCAAGTTCTGATCCCTACATCTGGATTGACGCACTGGATTTC
AACGAATCCTCCTACCAGTTGCCTGTGTGGTTCGTAGTTGGAGGTTTCAA
TGGCACCAGTCGTTTCTGGCGACTGTTCATCACAGCAACAGGCCCGGACA
ACTCTCCGCCTTGGTTAGTCGACGTGGGCTTTTATGGAATAGAAGCAGAT
CCAGGAAGTATTCAGTGTGCGGAGAGTGAACGCCAGTGCCCCCCCGACCA
GGAATGGGGATATTGTGACGTGCCAGCATGTTCTGGCCAAGCTGGAGGGT
GCCTGGAAAGTGAACGCCAGTGTTGGGACGGTTTATGCATCCCTGAAGAA
TACTGGTGTGACGGAGAGTTTTTCGACTGTCAGGAAGCAGAGGATGAGTT
CACTTGTGGGGGTTCGTGGCTGCAAAATTCTCCTGATTGGGCAATCGATG
CAACACCAACACTATGGCCCGATACGTCTGGACCAGACAAGGTTCTTGAC
AGTGAGGAAGGTTCCTTCTGGAGCCCGAGCGGTCCAGGCCCATGGTACAT
CATCTTCGACTTCCTGGGACCCTATACGTTTTCTTGGATGGGCATCACTA
ACTATGGGGACATAACCCATGACATTACAGCATTCAAGTTTCAAACGTCG
GCAAGTTCTGATCCCTACATCTGGATTGACGCACTGGATTTCAACGAATC
CTCCTACCAGTTGCCTGTGTGGTTCGTAGTTGGAGGTTTCAATGGCACCA
GTCGTTTCTGGCGACTGTTCATCACAGCAACAGGCCCGGACAACTCTCCG
CCTTGGTTAGTCGACGTGGGCTTTTATGGAATAGAAGCAGATCCAGGAAG
TATTCAGTGTGCGGAGAGTGAACGCCAGTGCCCCCCCGACCAGGAATGGG
GATATTGTGACGTGCCAGCATGTTCTGGCCAAGCTGGAGGGTGCCTGGAA
AGTGAACGCCAGTGTTGGGACGGTTTATGCATCCCTGAAGAATACTGGTG
TGACGGAGAGTTTTTCGACTGTCAGGAAGCAGAGGATGAGTTCACTTGTG
GGGGTTCGTGGCTGCAAAATTCTCCTGATTGGGCAATCGATGCAACACCA
ACACTATGGCCCGATACGTCTGGACCAGACAAGGTTCTTGACAGTGAGGA
AGGTTCCTTCTGGAGCCCGAGCGGTCCAGGCCCATGGTACATCATCTTCG
ACTTCCTGGGACCCTATACGTTTTCTTGGATGGGCATCACTAACTATGGG
GACATAACCCATGACATTACAGCATTCAAGTTTCAAACGTCGGCAAGTTC
TGATCCCTACATCTGGATTGACGCACTGGATTTCAACGAATCCTCCTACC
AGTTGCCTGTGTGGTTCGTAGTTGGAGGTTTCAATGGCACCAGTCGTTTC
TGGCGACTGTTCATCACAGCAACAGGCCCGGACAACTCTCCGCCTTGGTT
AGTCGACGTGGGCTTTTATGGAATAGAAGCAGATCCAGGAAGTATTCAGT
GTGCGGAGAGTGAACGCCAGTGCCCCCCCGACCAGGAATGGGGATATTGT
GACGTGCCAGCATGTTCTGGCCAAGCTGGAGGGTGCCTGGAAAGTGAACG
CCAGTGTTGGGACGGTTTATGCATCCCTGAAGAATACTGGTGTGACGGAG
AGTTTTTCGACTGTCAGGAAGCAGAGGATGAGTTCACTTGTGGGGGTTCG
TGGCTGCAAAATTCTCCTGATTGGGCAATCGATGCAACACCAACACTATG
GCCCGATACGTCTGGACCAGACAAGGTTCTTGACAGTGAGGAAGGTTCCT
TCTGGAGCCCGAGCGGTCCAGGCCCATGGTACATCATCTTCGACTTCCTG
GGACCCTATACGTTTTCTTGGATGGGCATCACTAACTATGGGGACATAAC
CCATGACATTACAGCATTCAAGTTTCAAACGTCGGCAAGTTCTGATCCCT
ACATCTGGATTGACGCACTGGATTTCAACGAATCCTCCTACCAGTTGCCT
GTGTGGTTCGTAGTTGGAGGTTTCAATGGCACCAGTCGTTTCTGGCGACT
GTTCATCACAGCAACAGGCCCGGACAACTCTCCGCCTTGGTTAGTCGACG
TGGGCTTTTATGGAATAGAAGCAGATCCAGGAAGTATTCAGTGTGCGGAG
AGTGAACGCCAGTGCCCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97381gene:BL97381Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97381_cuf2transcript:BL97381_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97381_cuf2-E1BL97381_cuf2-E1-1564476830-397320Branchiostoma lanceolatumexon
BL97381_cuf2-E2BL97381_cuf2-E2-1564476830-397317Branchiostoma lanceolatumexon
BL97381_cuf2-E3BL97381_cuf2-E3-1564476830-397315Branchiostoma lanceolatumexon
BL97381_cuf2-E4BL97381_cuf2-E4-1564476830-397313Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000225genomeSc0000225:203020..209382 -
Properties
Property NameValue
Transcript idBL97381_cuf2
Biotypeprotein_coding