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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97359_cuf2 >transcript:BL97359_cuf2-protein ID=transcript:BL97359_cuf2-protein|Name=transcript:BL97359_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=203bp
MPPRKGPCKSMVNRFFFDQKLGRCDQFVYGGCKGNRNNFLTMADCHEVCE
DHIHTTCSMPTEKGNCQGSFQRYYFDPATSTCAVFTYTGCGGNRNNFVSM
YDCESACMFETSDKTRMNLFRVDQQDQEDELTLPDRKVGWWPAILVAGLV
LVAAVIVGAVLWRRKSRAAYINRTQKGVRLEDMPGAGPDVTLTNEEKTKT
TVA Run BLAST on NCBI mRNA from alignment at Sc0000108:947811..952300- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97359_cuf2 ID=transcript:BL97359_cuf2|Name=transcript:BL97359_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4490bp|location=Sequence derived from alignment at Sc0000108:947811..952300- (Branchiostoma lanceolatum)
GGAAAGAAAGAAATTAAGGGAAGAAGGAAGAAAGACAGAAGTGGAGAAGA
AAGGTAGAAAAAGAGAGAGAGAAAATGCTTTGTAACTCTATCATGCCATT
TAACGTTCAATTGAAGAAGTACTAGTGGTTTATGTCATAGTAAATCTTGA
GTTCCAGATCCCTTCGATGTAATCGCAAATCTCATGAAAGTCATGGGGGA
CTTGTGCTACAATACAAAATTTGTCATGAAAAAGACAGATAGATTTTTCA
TTTCATTCTTTGTCTTCAGTGGCTAAGCGAGTTCGTGTGTTTTTTATTTG
AAGCTCCAGTTCTGGAGTCGAGATTCCGAAGCGCCAGTAGCAAGGATAAC
CCGTCCCCCAAGCCAGACCGGCCGGCCCCGACCCGCTTCCCGGTCGCCGA
GACGGGAGACGCCTGCCTGATGCCCCCGCGGAAGGGCCCGTGCAAGTCCA
TGGTGAACCGCTTCTTCTTCGACCAGAAGCTGGGCCGGTGTGACCAGTTC
GTGTACGGCGGCTGCAAGGGGAACAGAAACAACTTCTTGACAATGGCGGA
CTGCCACGAAGTCTGTGAAGGTGGGTTTCTTCAGATATATATCGAGTAAA
AACAGAACTGTAATAGCCTTGCTTGCCGCGCCCATGCCGTCCAATTGGGA
GAGCAGGAAGGACAAACAGGCAAAGCACGCTGAGCGATATTTCTAACCCC
AAAATTCTAACAACGCCTTAAGGCTACATTGGACCACATGTTACACATGT
GAACGTAACTGCACTTCAAAATATTCATAATTGCGCACTTCAAAATATTC
ATAATTTTGAACATGCAGAACCAGATGATTTCCGTGATACCAACGGAAAG
ACTATTATTTCTTTCATTCTAGATCTAGTGAAAAGCCAAATTATGTTAAA
GCAAATACGTAACAAAACGTGTCAAATGTGGAAATGTGCATGAATATTGT
TCACGAAGTCATTTTTGTCGCATCTGTCCCTAGACCATATCCACACCACG
TGTTCCATGCCGACGGAGAAGGGTAACTGCCAGGGGTCCTTCCAGCGCTA
CTACTTCGACCCCGCCACCTCCACGTGCGCCGTGTTCACCTACACGGGCT
GCGGCGGCAACAGGAACAACTTCGTGTCCATGTACGACTGCGAGAGCGCC
TGCATGTTCGAGACTAGCGACAAAACAAGGATGAACCTGGTAGGCACCTT
CAGTTGGGGATCTGGCCATCTTTGCGCCAAATATTGCACATAGACGTTTT
GTTTGTGTTGGGAGGATCATTCGCTATCAGTTGAAACGTACAGAGTGCGA
GTTGTGAGGGGTTCGATGTTACCTTATAGTATGATCATGAAAATGCTTTT
ATGCCAAAAGTCTCAAACAAAGATTTTCAATGACATATTTCCACACCTTT
TCCACATCTATTGATGTTATAAATATGTTTTGATATTCTGATACCCAATA
AGATCAACAAGTTCATTCATTCATTCAAGGGTCGTATTGGGTATCAGAAT
ATGCTGCTTCGTAAATGAAAAAAATCCCCTCTTATGCTTCGGGCCCAATT
GGACAAAGGAGTCCCGCCGGGTGACCCCTACGTCGCCCGTCGGACATCCT
GCGGTTGCCGGGCTATTTTTGGGCCCGGCCGGGACCCCGAATCATTTTAG
CTTGCCGTACCGAATCTAAATCCCCAAAAGGTCTTACAAATCTCGTTCTA
TTCTACGATACAGTGTGACGATAGATTCTGCGGTTTGTTTCTCTGTCCAG
TTCCGTGTGGATCAGCAGGACCAGGAGGATGAACTAACTCTGCCGGATAG
GAAGGTTGGTTGGTGGCCGGCCATCCTGGTGGCGGGGCTGGTGCTGGTGG
CGGCCGTCATCGTCGGTGCCGTTCTGTGGCGCCGGAAGTCACGCGCCGCT
TACATCAACAGGTACGGGAGGGGTAACGTTACATAGGCACTCTCCGAGCA
GAGGTTCGGCTCCGGTTGGTTTTTGACGTATATTTAGGCCTTCTAGTCGG
ACTTTTTATTTCGCCCCGTTTTCTTTATGTCGCTAGAAATAGAGCCGGAC
AAAATAGAGCCCGACAAAGATGCATAAAACACGTCAAAAACCAGCCGGAG
TCGAACGTCTGCTTGAAGAGTAGTGCTTATGCTTCCATTCCGCTAGACGG
CGATCGCGTTGCCACCTCGCTACGACCCAGCTGGGATTTGTGTAATCCTC
AACTCCATAAATGGCATATCAGGCAAAATGTAAAAGTGTGACAGAATAGA
CAACAAAGCACACAAAGCGTAAAAATGTTCGCTTTCCATTTATGAATTTC
GTTGAGCGCTCTGTCGCAGCGAGGTCGCCGCCCTGGTGGAAAGGGAGTGT
TGTCGTATATCTGTATCGCATGCACTCACTTAATGTTTTGTTAACGTAAT
GCCATAGATGGAATGATGTCCAGCTAGGTATTCAAAGGGATCAAGGTTGA
AAACAGTTTTAGAGCTATCTGACGTCACGCCTAAAAATTGTTACTCAAGC
AACTGGATAAAATTTAAGTAGATCATTAAGTGTTTGTTTGTTTGTCTGTC
TACTCGTTTGGTTTTGTTTTCATTTCGTTTGTCTCTCTGCTTGTTTGTTT
GTTATTTTGGTAACACAATGTGAAGAAGTCCCCACTTTTGTTTGCCAGGA
CTCAAAAAGGCGTAAGACTGGAGGACATGCCAGGAGCAGGTACATATTCC
CACAGGGATTAGAGTGATTGCTTACTTGCTGTGTCATCTGACTCGTTTGC
AAAAATACGGATGAATTGCGTTAAAAAATGGCCAATCATGCTTCGCTCCA
GATTATCTACACTATCAATCGTGCTAATCTTTGTGACCCTAAATTAACAT
GCATTAGTCGTGATCGTTCTATTGTGTCCACTCGATGACAAGTGAAATGA
ACACGTAATTCATTTGCCAGCTTTTAAGCGAAACTACGCAAAGCTTGGAA
ATGCATATGAGTCTACACTCTGTCTAACATGTACAGAGAGCGCAGTGACG
CGCTGCCTTTCAAACCACACCGGATCAAAATTAAGCACTGCTTATCCCTC
GATCTAAAGTTCAACAAGAACAGCCAACGATATTCTAAGCTTAAGCGGCC
TTTTCTACTGCGAGACGGGCGAAAGTACCGAATGAAGAGGCAGCAGGAAT
GTAATTATTACTAGTATTCTATTTCAAATAGATGATTGCTTCGTGCAAGG
ATCAAAAGGTGAAATAATAACTGACAATTATTTGCTACTGAAAGAATACA
TTAACTTTTCAGGTATTGAGGCCACAGACAAATCATTCCTCCATCTCATC
AAATGCCTTAACATAAAAAGTCAGTAACAACAAAAAAAACTCGTCTCTGG
TGAAACTCATTCCTCTCCTGAATTGCGTCTGAGGCTCAAACAGACATTAT
GGATCCCAACCCAGACTACGGATCCTATTACTGACTGCTCTTTCCTTTAG
AGTTTGACCAAGAATGTTGAATCACAAATTACAAATTGTTCAAAGCCGGG
TCAGCATCTATCCGAAAAAAATGCTCATAACTGAAATTTTCTCAGCCTGT
TGCATGCGTGCTGGTGTTGCCGCCTTGCGATTTTACATGAAATAGCGCTT
TGCTTACTGAATGACAACACTGTCAACACCACATTGACACATCTTTTCCT
TCCCCGTTGTTACCACAGGGCCGGACGTCACGCTTACAAATGAGGAAAAG
ACCAAAACAACTGTGGCCTGAGATGATAGAAGTTAACAGCCAGAGTAAAT
ATATCAGGCTAGAATATGTACTGCGATGTACTTCTTTGTTTCTTTTGCAC
GCATGCTCTGTATCTTAAGTACAATAAAGTGTTAATATTCAGTGTTCACG
TTTTGAATGAGTACAGAATTTGTTGTAAGGTCGTAAAATGATGGTGATGA
TTTCTTTTGTGAAACAAAAGAAAGCCGAGTGTTAATTGTTGCATTTCTAC
ACGATATTTTAGACGTTACCATGTTGTGCTGCATTACTTGTGTACAGCCA
TAACGAACACGAAGTGTAAGCTATCAATTTGTAGAACCAAAATCCTGGCT
GTATGTGTAAACCACTATATCACGTGATATCAAGACGCTTTGGAGCTTAT
ATTGCAATCTAAAATCGCTGTTTAACCAACGCTACTACATGTAGATCCTT
TGTCAGCAAGTGTGCCCACCATTTCTGTCAGTGACTATTTACTACTTTGA
TGTGGATACTCTCCACACGCATTTTCTGTCCAACACGCTGTCTGTTGTCT
CTACACAACCCCTCAAAGCACGTTATACATACTCAGTTCTTGCAAAGAAC
AACATGTCCATACTGAAAAGATTCAAAGATCACACATCATGTATGTTGCA
TTAGAGTTCTCTGTTGCATTTTGATAGTTGTGGAAACTGTTTAAGGCGTT
TTGAATGTATGTTTCCTGCTCCGGTTGGGTTTGCTGCCATGTTTCTTCTC
GTGGGATGAATAAATGTACAAAATACATGACGAAGTTCTA Coding sequence (CDS) from alignment at Sc0000108:947811..952300- >transcript:BL97359_cuf2 ID=transcript:BL97359_cuf2|Name=transcript:BL97359_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=3060bp|location=Sequence derived from alignment at Sc0000108:947811..952300- (Branchiostoma lanceolatum)
ATGCCCCCGCGGAAGGGCCCGTGCAAGTCCATGGTGAACCGCTTCTTCTT
CGACCAGAAGCTGGGCCGGTGTGACCAGTTCGTGTACGGCGGCTGCAAGG
GGAACAGAAACAACTTCTTGACAATGGCGGACTGCCACGAAGTCTGTGAA
GACCATATCCACACCACGTGTTCCATGCCGACGGAGAAGGGTAACTGCCA
GGGGTCCTTCCAGCGCTACTACTTCGACCCCGCCACCTCCACGTGCGCCG
TGTTCACCTACACGGGCTGCGGCGGCAACAGGAACAACTTCGTGTCCATG
TACGACTGCGAGAGCGCCTGCATGTTCGAGACTAGCGACAAAACAAGGAT
GAACCTGTTCCGTGTGGATCAGCAGGACCAGGAGGATGAACTAACTCTGC
CGGATAGGAAGGTTGGTTGGTGGCCGGCCATCCTGGTGGCGGGGCTGGTG
CTGGTGGCGGCCGTCATCGTCGGTGCCGTTCTGTGGCGCCGGAAGTCACG
CGCCGCTTACATCAACAGGACTCAAAAAGGCGTAAGACTGGAGGACATGC
CAGGAGCAGGGCCGGACGTCACGCTTACAAATGAGGAAAAGACCAAAACA
ACTGTGGCCTGAATGCCCCCGCGGAAGGGCCCGTGCAAGTCCATGGTGAA
CCGCTTCTTCTTCGACCAGAAGCTGGGCCGGTGTGACCAGTTCGTGTACG
GCGGCTGCAAGGGGAACAGAAACAACTTCTTGACAATGGCGGACTGCCAC
GAAGTCTGTGAAGACCATATCCACACCACGTGTTCCATGCCGACGGAGAA
GGGTAACTGCCAGGGGTCCTTCCAGCGCTACTACTTCGACCCCGCCACCT
CCACGTGCGCCGTGTTCACCTACACGGGCTGCGGCGGCAACAGGAACAAC
TTCGTGTCCATGTACGACTGCGAGAGCGCCTGCATGTTCGAGACTAGCGA
CAAAACAAGGATGAACCTGTTCCGTGTGGATCAGCAGGACCAGGAGGATG
AACTAACTCTGCCGGATAGGAAGGTTGGTTGGTGGCCGGCCATCCTGGTG
GCGGGGCTGGTGCTGGTGGCGGCCGTCATCGTCGGTGCCGTTCTGTGGCG
CCGGAAGTCACGCGCCGCTTACATCAACAGGACTCAAAAAGGCGTAAGAC
TGGAGGACATGCCAGGAGCAGGGCCGGACGTCACGCTTACAAATGAGGAA
AAGACCAAAACAACTGTGGCCTGAATGCCCCCGCGGAAGGGCCCGTGCAA
GTCCATGGTGAACCGCTTCTTCTTCGACCAGAAGCTGGGCCGGTGTGACC
AGTTCGTGTACGGCGGCTGCAAGGGGAACAGAAACAACTTCTTGACAATG
GCGGACTGCCACGAAGTCTGTGAAGACCATATCCACACCACGTGTTCCAT
GCCGACGGAGAAGGGTAACTGCCAGGGGTCCTTCCAGCGCTACTACTTCG
ACCCCGCCACCTCCACGTGCGCCGTGTTCACCTACACGGGCTGCGGCGGC
AACAGGAACAACTTCGTGTCCATGTACGACTGCGAGAGCGCCTGCATGTT
CGAGACTAGCGACAAAACAAGGATGAACCTGTTCCGTGTGGATCAGCAGG
ACCAGGAGGATGAACTAACTCTGCCGGATAGGAAGGTTGGTTGGTGGCCG
GCCATCCTGGTGGCGGGGCTGGTGCTGGTGGCGGCCGTCATCGTCGGTGC
CGTTCTGTGGCGCCGGAAGTCACGCGCCGCTTACATCAACAGGACTCAAA
AAGGCGTAAGACTGGAGGACATGCCAGGAGCAGGGCCGGACGTCACGCTT
ACAAATGAGGAAAAGACCAAAACAACTGTGGCCTGAATGCCCCCGCGGAA
GGGCCCGTGCAAGTCCATGGTGAACCGCTTCTTCTTCGACCAGAAGCTGG
GCCGGTGTGACCAGTTCGTGTACGGCGGCTGCAAGGGGAACAGAAACAAC
TTCTTGACAATGGCGGACTGCCACGAAGTCTGTGAAGACCATATCCACAC
CACGTGTTCCATGCCGACGGAGAAGGGTAACTGCCAGGGGTCCTTCCAGC
GCTACTACTTCGACCCCGCCACCTCCACGTGCGCCGTGTTCACCTACACG
GGCTGCGGCGGCAACAGGAACAACTTCGTGTCCATGTACGACTGCGAGAG
CGCCTGCATGTTCGAGACTAGCGACAAAACAAGGATGAACCTGTTCCGTG
TGGATCAGCAGGACCAGGAGGATGAACTAACTCTGCCGGATAGGAAGGTT
GGTTGGTGGCCGGCCATCCTGGTGGCGGGGCTGGTGCTGGTGGCGGCCGT
CATCGTCGGTGCCGTTCTGTGGCGCCGGAAGTCACGCGCCGCTTACATCA
ACAGGACTCAAAAAGGCGTAAGACTGGAGGACATGCCAGGAGCAGGGCCG
GACGTCACGCTTACAAATGAGGAAAAGACCAAAACAACTGTGGCCTGAAT
GCCCCCGCGGAAGGGCCCGTGCAAGTCCATGGTGAACCGCTTCTTCTTCG
ACCAGAAGCTGGGCCGGTGTGACCAGTTCGTGTACGGCGGCTGCAAGGGG
AACAGAAACAACTTCTTGACAATGGCGGACTGCCACGAAGTCTGTGAAGA
CCATATCCACACCACGTGTTCCATGCCGACGGAGAAGGGTAACTGCCAGG
GGTCCTTCCAGCGCTACTACTTCGACCCCGCCACCTCCACGTGCGCCGTG
TTCACCTACACGGGCTGCGGCGGCAACAGGAACAACTTCGTGTCCATGTA
CGACTGCGAGAGCGCCTGCATGTTCGAGACTAGCGACAAAACAAGGATGA
ACCTGTTCCGTGTGGATCAGCAGGACCAGGAGGATGAACTAACTCTGCCG
GATAGGAAGGTTGGTTGGTGGCCGGCCATCCTGGTGGCGGGGCTGGTGCT
GGTGGCGGCCGTCATCGTCGGTGCCGTTCTGTGGCGCCGGAAGTCACGCG
CCGCTTACATCAACAGGACTCAAAAAGGCGTAAGACTGGAGGACATGCCA
GGAGCAGGGCCGGACGTCACGCTTACAAATGAGGAAAAGACCAAAACAAC
TGTGGCCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000108 | genome | Sc0000108:947811..952300 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97359_cuf2 |
| Biotype | protein_coding |
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