Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

transcript:BL97348_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97348_cuf0
Unique Nametranscript:BL97348_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97348_cuf0

>transcript:BL97348_cuf0-protein ID=transcript:BL97348_cuf0-protein|Name=transcript:BL97348_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=189bp
VPGYTERDGTHYKVFDQAMTYSDAQHACAVDGGHLAHMTTQELHDFLVSL
IQESGAGGDYWIGLQDVAHEGDWGLNTWAWSDGTPISDCFSNWAPGEPGN
SAGNDCGQLWEGMGLKWDDTYCDIQKNFICQIGPDEDCAPEVEDCTEGQR
QCLNGLCITEDYWCDGQFQDCSGGEDEANCEGELSGYTE
Run BLAST on NCBI

mRNA from alignment at Sc0000148:685675..689365-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97348_cuf0 ID=transcript:BL97348_cuf0|Name=transcript:BL97348_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3691bp|location=Sequence derived from alignment at Sc0000148:685675..689365- (Branchiostoma lanceolatum)
CAGTGCCCGGGTACACTGAGCGTGATGGAACCCACTACAAGGTGTTTGAC CAAGCCATGACGTACAGTGATGCTCAGCACGCCTGCGCAGTAGATGGAGG GCACCTTGCCCATATGACGACCCAGGAGCTGCACGACTTCCTCGTCTCCC TGATTCAGGAGTCTGGTGCAGGCGGGGACTACTGGATCGGACTGCAGGAT GTTGCAGTGAGTACCCAAAATGATACAAATTTTACCTTTTCAAGACCGTA TCCTTTTCTGATCTATACAATTCTTTGACTTTAAAAACATTGTGTTGTCT CTAATGCGTGCATTTTAGCAATATGTGGTGAGCTGCCCTATGGAATTCCT TACTCTCAGTATACGGCTAGCGGCTGGACACTTGGTGGCATTTCAAAAAT GCAGTTTTTGAATTTGATAGAAAATTGATTAGATATGTGCATTAGGGGAA TAGCCATAAGCCACATTCTGGAATATTATTATTATGTAAGGACTGCGACG TCGAGGATGCGTAACAGTTAGATCATTCGATTCGAAGCCCATATGTTTCG GGTTCGAAACTCGCCATGCCCCGGCGTTCTGCCCTAGGGAAAGGCACTTT ACACGCAATACTAAAGTGATAGATAGGACAAAGCGAGATAACTGGGAAAT AGTGTTGCTCAACCCACACGTACTAAAGGAGGTGCTCCCAATGTGACCTG CACAGCAGTTTGAGGGGGGATTCGACCTCCATAGTCACATTAACCTATTA AACCCAGTGGCCAACCCGGTATTGACCATTTAGAACTGTTTGTAAACGTG GACTTTCAGTTTCAATGCGTATTTTTTACTAGAGTGTTGGTGTTTTTTTA ACCCTGTGCCCGTTATTCCGTAAAGATTTGATTCGCTTTGGCACCTTTGA GAAGTTGATATTGTGTGGCTGTTGATATAGCCTTTTCCTTAAGTGAATCA TACAATACGAGTCTATTTGGGTCCAATTCCTCTAACCCCCTTGAAAGTTA GCTGGGACAGGGCCCAAGTCTCATGTTGTCAGACCTGGGCGGTGTTGCTG AAAAGTGTTGTGCTATAAAAAATGTGTGCTAGTATTCTATGCAAACGACT TTAAAGTATCAAACTTCATTTCATAGTTCAACACACTTGTAAACTAATTA TAACGAGATATAGACACAGTAATTGAGGGACTCACATTGGCTGATTGGTA ATGGTCATCTTCTAACATGATTTTCTGTTGATCTGTCAAAACTGAAGTGT GCAAACATCAGAGACGGATTTGTGCGCCAACATTTGCATAATTGCTAACA AGAACCGTTATTTCTTTTACAGCATGAAGGTGACTGGGGGTTAAACACAT GGGCCTGGTCTGATGGAACTCCTATCAGCGATTGCTTCTCCAACTGGGCA CCGGGAGAGCCCGGAAACAGTGCTGGGAATGACTGCGGGCAGCTCTGGGA AGGCATGGGTCTCAAATGGGACGACACCTATTGTGACATCCAGAAGAACT TCATCTGCCAAATAGGTAATTCTTTGTCTCATTCAGGGATTCACAGATTC AGAGTGAACTTTTTCATTTGATTATTATCTGCATCATCTAAATTCATTTA CCCCCAAATAGCCCCTACAGGGGTAAAGTAGGGGGGATTGATGTCCCGGG ATAAGGCGGGCAGGCCTCCAGGCTGGCACGGGACGACTCAATGGTGGGAG CCGTCGCAACCGTGCCAGGCAGGGTGTTCCACTGTGGGATAGTACGGGGA AAGACTTTGTGTTTATAAATATCATTTATTGCCTGAATGGTGTAAAACTT AAGGTCGTGGCTCCCCCGGGTGCGCCCCTAGGCTGGTTTCAGCAAACTGT GTCTATATTAATATGGTTGTTAACAACTTTGTAGAAGAAGGTGAGGCGGA CGTTCCTCCTCCTTTCAGAGAGATGGGCTCACTGCAGGTCGTTGAGCATT TGTGTCAGGTATAATCGTACATGGCTACTGTCGAACAAGACTTTACGATT TTGTTTCATTATATTTTTCTACTGTAACGTCAATAAAGAATTTTAATCTT TGCCATTTGCTTTTTGCAGGTCCTGATGAAGACTGTGCACCAGAAGGTAA TGTTAATCTTGTACTGCATCCAAAATATTAGTATTTTGGCCTATTTTTGG ACGAAAAGTACCTTCATTTTACATGTACACTCTTTGGATATATTTCATCA GTTTAGGACCGAACGCAACACTTCAAATTAGTACGTCCTGTTTAATCTGT TTGATTCTGTTAAGTTTCTTCCTGCGTAATTCCTGCACGTCTTGGCATTG TCACCTGCACCTTGAATTACCAGTATAATCTCTTCTGTATCGTTGTTGAT AGCGAACTTTGTGACTTCGGGTGCCAGTGTGAAAAATAGATCATTTGCTT ACACAGCCCCCTCAGATCCTCTGTTCTTGGAAAGCGCTCATTGTACACTG CAATTCGCACTGTAATCCTTGATAAGGCTAAACGAAGAACCCCCTTTTTA AACAATTTTTTGCTGTTGATTTTTTTTCGCTCTAAAAACCTTCGCCAAGA AAGGCATGGATTCGGGGCTATTTGGCTGTCTTTTATGTTGTTTAATCTGT GTTGGCAACGTACGTCGAGAAGTCTTGGATGGATATTCATAACATTTCGT ACGTCAGTAAGTGTTGACAAAGTAAAAAAAAATGGTCAGATTACTGCCCC CCCTCCTTTTACTTGCCTTCCATATTGTTCTGCAGCAGAACTTCTAGAAA ACTTAAAGTCTAAGGTAATGGAACCCATATAATGAAATCAAACCTTTTTC TCCTTCTAAGTTACTGTCCTTTCGCTTTTTTTCCGTCGAAGGAGAGGGGG ATCAGACTTGCCCAAACTGCAGGCAAAATTCTGTGTTTCATGATTATGGC TTAAACAGTTTACACTTAGAGGCGAGTCTAATGTGAGTTTATAGCATGTA ATAAAACGGCATTTTCCTCCATATTTTTATAAGTTGAGGATTGTACGGAG GGTCAACGCCAGTGTTTGAACGGGTTGTGCATCACTGAAGACTACTGGTG TGATGGGCAGTTTCAGGACTGCAGTGGCGGTGAGGACGAAGCTAACTGTG AAGGTGAATGTGAGTATGGAATGCTAACTATGACTTACTGGTTTTAGAAA AAAGATATAATTTACGCTGCTTCTTACTTTATAAAAGGTTTATCTCCAAT CGGAATAAGGTTTCAACAATCACATCGTACTGAAATATATTACTTGTGAT CCTATATAATCATCTAAATAAAATACAAAGTAGGTCTTAGGAAAATAATT TCATCAATACCTGGTTGTGTATAAAGAATATCCCATATCCTACAGAGTAG GTCCTTATGCCAGGAAAAACAACAATTCGAGTTGTTCACTGAGAGGGATT CATGTAAAATGTGGAAATCAGAAAGGGAGAAATATTCAAATATATCGGTT ATGAAGATAAGCTTGGTGAAGATTAATGTTCATACTTTTATACACATTCG ATATGCACTTATAAAGCTCACGTGGCATTTACATCCCCCCCTCTTTGGCA CATGCACAAGAATTGGGGGGGGGGGGGTATTGCTTTAATAAATCTCAGAG TATTTCCAAAACTAGCGGCAGCAAGGTTAGATTTTTGTTTAAAGATTTAA CAGGAATATCCTCACCTACCACAGTGTCCGGGTACACCGAG

Coding sequence (CDS) from alignment at Sc0000148:685675..689365-

>transcript:BL97348_cuf0 ID=transcript:BL97348_cuf0|Name=transcript:BL97348_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2835bp|location=Sequence derived from alignment at Sc0000148:685675..689365- (Branchiostoma lanceolatum)
GTGCCCGGGTACACTGAGCGTGATGGAACCCACTACAAGGTGTTTGACCA
AGCCATGACGTACAGTGATGCTCAGCACGCCTGCGCAGTAGATGGAGGGC
ACCTTGCCCATATGACGACCCAGGAGCTGCACGACTTCCTCGTCTCCCTG
ATTCAGGAGTCTGGTGCAGGCGGGGACTACTGGATCGGACTGCAGGATGT
TGCACATGAAGGTGACTGGGGGTTAAACACATGGGCCTGGTCTGATGGAA
CTCCTATCAGCGATTGCTTCTCCAACTGGGCACCGGGAGAGCCCGGAAAC
AGTGCTGGGAATGACTGCGGGCAGCTCTGGGAAGGCATGGGTCTCAAATG
GGACGACACCTATTGTGACATCCAGAAGAACTTCATCTGCCAAATAGGTC
CTGATGAAGACTGTGCACCAGAAGTTGAGGATTGTACGGAGGGTCAACGC
CAGTGTTTGAACGGGTTGTGCATCACTGAAGACTACTGGTGTGATGGGCA
GTTTCAGGACTGCAGTGGCGGTGAGGACGAAGCTAACTGTGAAGGTGAAT
TGTCCGGGTACACCGAGGTGCCCGGGTACACTGAGCGTGATGGAACCCAC
TACAAGGTGTTTGACCAAGCCATGACGTACAGTGATGCTCAGCACGCCTG
CGCAGTAGATGGAGGGCACCTTGCCCATATGACGACCCAGGAGCTGCACG
ACTTCCTCGTCTCCCTGATTCAGGAGTCTGGTGCAGGCGGGGACTACTGG
ATCGGACTGCAGGATGTTGCACATGAAGGTGACTGGGGGTTAAACACATG
GGCCTGGTCTGATGGAACTCCTATCAGCGATTGCTTCTCCAACTGGGCAC
CGGGAGAGCCCGGAAACAGTGCTGGGAATGACTGCGGGCAGCTCTGGGAA
GGCATGGGTCTCAAATGGGACGACACCTATTGTGACATCCAGAAGAACTT
CATCTGCCAAATAGGTCCTGATGAAGACTGTGCACCAGAAGTTGAGGATT
GTACGGAGGGTCAACGCCAGTGTTTGAACGGGTTGTGCATCACTGAAGAC
TACTGGTGTGATGGGCAGTTTCAGGACTGCAGTGGCGGTGAGGACGAAGC
TAACTGTGAAGGTGAATTGTCCGGGTACACCGAGGTGCCCGGGTACACTG
AGCGTGATGGAACCCACTACAAGGTGTTTGACCAAGCCATGACGTACAGT
GATGCTCAGCACGCCTGCGCAGTAGATGGAGGGCACCTTGCCCATATGAC
GACCCAGGAGCTGCACGACTTCCTCGTCTCCCTGATTCAGGAGTCTGGTG
CAGGCGGGGACTACTGGATCGGACTGCAGGATGTTGCACATGAAGGTGAC
TGGGGGTTAAACACATGGGCCTGGTCTGATGGAACTCCTATCAGCGATTG
CTTCTCCAACTGGGCACCGGGAGAGCCCGGAAACAGTGCTGGGAATGACT
GCGGGCAGCTCTGGGAAGGCATGGGTCTCAAATGGGACGACACCTATTGT
GACATCCAGAAGAACTTCATCTGCCAAATAGGTCCTGATGAAGACTGTGC
ACCAGAAGTTGAGGATTGTACGGAGGGTCAACGCCAGTGTTTGAACGGGT
TGTGCATCACTGAAGACTACTGGTGTGATGGGCAGTTTCAGGACTGCAGT
GGCGGTGAGGACGAAGCTAACTGTGAAGGTGAATTGTCCGGGTACACCGA
GGTGCCCGGGTACACTGAGCGTGATGGAACCCACTACAAGGTGTTTGACC
AAGCCATGACGTACAGTGATGCTCAGCACGCCTGCGCAGTAGATGGAGGG
CACCTTGCCCATATGACGACCCAGGAGCTGCACGACTTCCTCGTCTCCCT
GATTCAGGAGTCTGGTGCAGGCGGGGACTACTGGATCGGACTGCAGGATG
TTGCACATGAAGGTGACTGGGGGTTAAACACATGGGCCTGGTCTGATGGA
ACTCCTATCAGCGATTGCTTCTCCAACTGGGCACCGGGAGAGCCCGGAAA
CAGTGCTGGGAATGACTGCGGGCAGCTCTGGGAAGGCATGGGTCTCAAAT
GGGACGACACCTATTGTGACATCCAGAAGAACTTCATCTGCCAAATAGGT
CCTGATGAAGACTGTGCACCAGAAGTTGAGGATTGTACGGAGGGTCAACG
CCAGTGTTTGAACGGGTTGTGCATCACTGAAGACTACTGGTGTGATGGGC
AGTTTCAGGACTGCAGTGGCGGTGAGGACGAAGCTAACTGTGAAGGTGAA
TTGTCCGGGTACACCGAGGTGCCCGGGTACACTGAGCGTGATGGAACCCA
CTACAAGGTGTTTGACCAAGCCATGACGTACAGTGATGCTCAGCACGCCT
GCGCAGTAGATGGAGGGCACCTTGCCCATATGACGACCCAGGAGCTGCAC
GACTTCCTCGTCTCCCTGATTCAGGAGTCTGGTGCAGGCGGGGACTACTG
GATCGGACTGCAGGATGTTGCACATGAAGGTGACTGGGGGTTAAACACAT
GGGCCTGGTCTGATGGAACTCCTATCAGCGATTGCTTCTCCAACTGGGCA
CCGGGAGAGCCCGGAAACAGTGCTGGGAATGACTGCGGGCAGCTCTGGGA
AGGCATGGGTCTCAAATGGGACGACACCTATTGTGACATCCAGAAGAACT
TCATCTGCCAAATAGGTCCTGATGAAGACTGTGCACCAGAAGTTGAGGAT
TGTACGGAGGGTCAACGCCAGTGTTTGAACGGGTTGTGCATCACTGAAGA
CTACTGGTGTGATGGGCAGTTTCAGGACTGCAGTGGCGGTGAGGACGAAG
CTAACTGTGAAGGTGAATTGTCCGGGTACACCGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97348gene:BL97348Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97348_cuf0transcript:BL97348_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97348_cuf0-E1BL97348_cuf0-E1-1564476830-347263Branchiostoma lanceolatumexon
BL97348_cuf0-E2BL97348_cuf0-E2-1564476830-347260Branchiostoma lanceolatumexon
BL97348_cuf0-E3BL97348_cuf0-E3-1564476830-347258Branchiostoma lanceolatumexon
BL97348_cuf0-E4BL97348_cuf0-E4-1564476830-347256Branchiostoma lanceolatumexon
BL97348_cuf0-E5BL97348_cuf0-E5-1564476830-347254Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000148genomeSc0000148:685675..689365 -
Properties
Property NameValue
Transcript idBL97348_cuf0
Biotypeprotein_coding