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transcript:BL97345_cuf6 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97345_cuf6
Unique Nametranscript:BL97345_cuf6
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97345_cuf6

>transcript:BL97345_cuf6-protein ID=transcript:BL97345_cuf6-protein|Name=transcript:BL97345_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=164bp
LGQPLTIWRPGILFSQAKDVEFFEDFLYGRWDGAVTLFTRYTLTYKCQMV
LGAYPLDVQNCALGIDMYGARFLWGPKTEWFDEGKHPVVVRSSGINAQFR
LVKAQAFSYVNSYIERGRTCLYAASSCDFTSMEQECLSHDCISADQQGTA
KCEKCNFYGSCTST
Run BLAST on NCBI

mRNA from alignment at Sc0000070:892211..897147-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97345_cuf6 ID=transcript:BL97345_cuf6|Name=transcript:BL97345_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=4937bp|location=Sequence derived from alignment at Sc0000070:892211..897147- (Branchiostoma lanceolatum)
TTGGGGCAGCCCCTTACCATCTGGAGACCAGGCATATTATTCAGCCAGGC AAAAGATGTGGAGTTTTTCGAAGATTTCCTTTACGGGCGATGGGATGGGG CTGTTACTTTGTTCACAAGGTATGTTGCTGCCTTCAGCTTCATACCATTT TGCAATGACCATACCATGTATATTCTTTTAAATTTTATTATCATTTTGAT ATTGGACAAGTTTTCATAAGTTATCTTAGTTTTAACAGTGACACATACAG AGAACAGTAAGCTTGATAAGGTAAAGTCCCATCGTCCTTTTGAGGCCGTA AGGGAAGTGGGTTGTTATCCTTCCACTGCCTTTTACCTCCAAAACTTACG TCAAGTACCCATTTGTAAACCTGGGTGCCATTCCCAAGGGCACAACATCG GTGACGTCAGGGATACGAACCAAGGAACACTCTTCTGTTACGCCACACGG CCACACAGATACCATACATAATAGTATATCTTTGTTCACATGGAAGCTCA TCTGTGTTGGTAGAGTACATATTGGAAATTTTAAACTATAATNACATGAA AGCTCATCTGTGTTGGTAGAGTACATATTGGAAATTTTAAACTATAATCC AACACAAAGAAGTTGAACTAACCATAAATTTTCGGCTGGTAACTCCAACC TTCGTCAGATGTTCGAATCACTGCGTTGAACGCCGGGAAGTCGGAGACGT GATGACGTCAGCAGTGAATCGAAAGCAGCGGGCAGACGGAATCTTCCACC GTCGCGGTTCAGGGAGGGGTGATGAGCCCTGATGTAGATTGCCTCCTTCA CGCCCCTCACAAACCAGTCCTGTTCCTTATCCAAAATGTGCACATTATCG AGTGTCACTGTATGTCCCAGGGACTCAATATGTATGTGTTGAGACACTTC TGACGTAATGGTGCTGGGACGTCTGTGCAAAAATCCAGTTTTGAGTGAAC GTGACGTTTCCCCTATGTACGTCTCTGTACAAGGTCCTCTGATGTTCTGT CCTGCACAACGTATGTGGTAGATCACCCCACAATTTTGTTCTTTTGGTGT TTTGTCCTTGGGTGAAACTAACAACTGTCTTAGTGTCCGAGTTGGTTTGA AGCAGGTCTTAATGCCATGCGTACTGAAAATCCTCCGCAGAGCCTCTGAG AGATTTGCGACGTAAGGCAAGACGACCAAACCCTTATTCTGTCTCGTGGA AGGCGTTTGAGTACTACTGCGTGTAGACGTCGGTCTGGGTGCAGTTGCCT TGGCTACCGCCCACTTCGGGTAACCACAGTTTAACAAGGCCTGAGTGATG TGTTCATTCTCCCTATCTCTGTCCTGGGGGTTGGTAATTACACTGTCCGC CCTGTGGAAGAGAGTCCGGATGACCCCTAGTTTGTGTTCGAGAGGATGGT TGGATTTAAAGTTTAAATATTGATCCGTGTGAGTGGGTTTTCTGTAGATC CTTATGTCCAACGAACCATCATCTTTCACAACTGTGAGAGTATCCAGAAA GGGCAGAGTTCTGTCCTGTTCTTCCTCTGTGGTAAATTTGATGTCTGGGT CTAAACTGTTGAGATGTTCAGTGAATTTTTCAGCATGGGCCTTCTTCAAC TTANGTAAATTTGATGTCTGGGTCCAAACTGTTGAGATGTTCAGTAAATT CTTCAGCATGGGCCTTCTTCAATTTAGTGTGCGTATCATCCACGTAGCGA TACCACCATAAAGGGGGATGTGGGGCAGTACTGATAGCTAGTTGTTCGAG GTGTTCCATGAACAGGTTGCAAACAATTGGGGAAACTGGAGAGCCCATGG CTGCTCCGTGAACCTGGCGGTAAAACTCTCCATTGTAAACAAAATACGTA CAGTCTAGACAAACTTTCAACAAGTTGACAACATGTGCTGGTGAAAGTGT AGACCGTTGTCCGAGGGTTGTATCTGCTTCTAGTCTCTGCCTAATAATGT CCAGTGCTTTCCCTATCGGCACTGAGGTAAACAATGCTGTGGCGTCATAG GAACGTAGCACTTCGTCGGCTTCTACTCTTTGTTGTTTTATTGTTTCCAC AAATTGTTGTGAATTAGCAATATGGTGTGGCGATTGTCCAACCAAAGGGG ATAAAATATCCGCTAAATGTTTCGCACTAGGATATGTAATCGAGTCAATA CTGCTCACAATTGGTCTAAGGGGTGTTCCGTTCTTGTGGATTTTAGGCAG TCCGTAAAATTTCGGTGGAAGCTCAGTAGTGGGATATAATTTTAAGTATT TTGGGTGGTCTATTCCTTTTTCCTTTTCGATTTTTTGCAATACTTCAATC AATAGTTTCTTGTAATCAGAAGGANAGGTAGTTTGTCGGCCTGGATGCAA ACAGCTGGGACCTGTGCACGAGCGCGTCCTTGACCGCAGTGTAGCCGTTC AGAACCACCACATCTTCCATCCCCATCCTGACGGTGAAGACGTCCCCGTA CTGCCGCCTCCATTCCGTCAGCTTGAGGTGAGGCGCTCGGCTCAAGGCGA GGAGGTGCCCGAGAACAGGCACACGTCCTGCCGGGTAAGGAGGCAGGTTT CTGGGGTTACCCGAAGTGGGCGGTAGCCAAGGCAACTGCACCCAGACCGA CGTCTACACGCAGTAGTACTCAAACGCCTTCCACGAGACAGAATAAGGGT TTGGTTGTCTTGCCTTACGTCACAAATCTCTCAGAGGCTCTGCGGAGGAT TTTCAGTACGCATGGCATTAAGACCTGCTTCAAACCAACTCGGACACTAA GACAGTTGTTAGTTTCACCCAAGGACAAAACACCGAAAGAACAAAAGTGT GGGGTGATCTACCACATACGTTGTGCAGGACAGAACATCAGAGGACCGTG TACAGAGACGTACATAGGGGAAACGTCACGTTCACTCAAAACTAGATTTT TGATGCACAGACGTCCCAGCACCATTACGTCAGAAGTGTCTCAACACATA CATATTGAGTCCCCGGGACATACAGTGACACTCGATAATGTGCACATTTT GGATAAGGAACAGGACTGGTTTGTGAGGGGCGTGAAGGAGGGCAATCTAC ATCAGGGCTCATCACCCCTCCCTGAACCGCGACGGTGGAAGATTCCGTCT GCCCGCTGCTTTCGATTCACTGCTGACGTCATCACGTCTCCGACTTCCCG GCGTTCAACGCAGTGATTCGAACATCTGACGAAGGTTGGAGTTACCAGCC GAAAATTTATGGTTAGTTCAACTTCTTTGTGTTGGATTATAGTTTAAAAT TTCCAATATATATCTTTGTTCAGTTAGAACTGTTGACTTAGTCATTGCAC ATCAAGATAACAATGGTTGCGATGTTGTCTTTTGTATATAATGTTTATTT TACTTTATATCATTTTTTTTTTTTGTAGATACACGCTGACGTACAAGTGC CAAATGGTGTTGGGCGCATATCCACTGGACGTTCAGAACTGTGCCCTGGG CATTGACATGTGTATGTTCATCAATAGCATAATGTTGATTAGTTTGTAGT TAGAATCTTAGACATTTTAAAATTTCTGCGAAAAGTATCATAATCATGTT CATTGATTCGTCGATGAAAGTTAGACAACAAGGTAATAAGATACTACTAC GCAAAAGAATCCCAGTTAGTAGACAGTAGTTACTCAAGCAACTGGATAAA ATTTCGAAACAGTCAGACGTTCAGTGACTAAAGAAGGATCTGGTAAAACT AGGTTTTATACCAAAACTCTGAATAGATATGTTGATGAAGGGAAGACATT TTCAGATGGTTCAATAGGATAGTAAGTTAAGACAAGGTTGTATGCTAATG AATCAATTAGCTCCTGTTGTTTTAAAACCTAGTTCTACCCGATCCAAGTA TAAAACCTAGTTCTACCAGATCCTTCTGTAGTCACTGACGAAAGATAGCG GATGCTGTCTGACACGTTTGACTGTTTCGAAATTTTATCCAGTTGCTTGA GTATCCGCTGTCTTTCGGCAGTGACTAAAGGAAGAACAGGAGAACCACGT TTTATACCTGGTCTTTGAATTAGTACAATTTTAGGATGGTACAATAGAAG ACGAAGTCAAGAAAAGGTTGTACGCTGAATAGTCAATTAGCTCCAGACCT TTTGGTTGAGTACAGGAGCTAATATTCTTCATTAACTCATTGTTATTCCT AATGCCATCTCCCCATTGTTTTAGTGTCCTTAGCTGTTGAATGAGAGTGA TTATGGACGATATGATTGCTTTTTAGATGGAGCCCGTTTTCTATGGGGTC CAAAGACGGAGTGGTTCGATGAAGGCAAGCATCCGGTTGTCGTGAGGTCG TCTGGTATCAACGCGCAGTTCCGGCTTGTCAAAGCACAAGCCTTCTCTTA TGTCAACTCCTACATCGAACGTGGTGAGTATGCATTTAACCAGAGGTGTT CATCGATCAGTTTGTATGACTTTATGTCTTGAACATCTTTGGTTTAAACA AAAGATCTGCCACGTATGCCATTTGATATCCAGGTTATGCAAGCAAATCT TATTTATTGGCATGTAAACGTTGGATTATCTAGCAACTACTCATTTTATT GTCGTATTCGTATATGTACCCATATGTACGGCTTTTCGTAACCTGGTCCC GAGTTGATTTTAGCTGCGAGTTAAAAAAAACACGGGGCCTGGCCGTGCCC ACGGGGTCAAGTAGAGGCCACACCCGAAAGTACAAAAACAGCCCGTAAAC TAGCCGACAGGGCCCCCTTTTACAATTGTGATTATAACATTGGTAAATGC TTCTAAGTTTATGTTCTGCACATGTGTGGATGTGTGTTTGTAGGGAGAAC CTGTCTCTACGCAGCTTCGTCTTGTGACTTCACCTCAATGGAACAAGAGT GCTTGTCGCACGACTGCATTAGTGCAGACCAACAGGGGACTGCAAAATGC GAGAAGTGCAACTTCTATGGAAGCTGTACATCTACAG

Coding sequence (CDS) from alignment at Sc0000070:892211..897147-

>transcript:BL97345_cuf6 ID=transcript:BL97345_cuf6|Name=transcript:BL97345_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=1968bp|location=Sequence derived from alignment at Sc0000070:892211..897147- (Branchiostoma lanceolatum)
TTGGGGCAGCCCCTTACCATCTGGAGACCAGGCATATTATTCAGCCAGGC
AAAAGATGTGGAGTTTTTCGAAGATTTCCTTTACGGGCGATGGGATGGGG
CTGTTACTTTGTTCACAAGATACACGCTGACGTACAAGTGCCAAATGGTG
TTGGGCGCATATCCACTGGACGTTCAGAACTGTGCCCTGGGCATTGACAT
GTATGGAGCCCGTTTTCTATGGGGTCCAAAGACGGAGTGGTTCGATGAAG
GCAAGCATCCGGTTGTCGTGAGGTCGTCTGGTATCAACGCGCAGTTCCGG
CTTGTCAAAGCACAAGCCTTCTCTTATGTCAACTCCTACATCGAACGTGG
GAGAACCTGTCTCTACGCAGCTTCGTCTTGTGACTTCACCTCAATGGAAC
AAGAGTGCTTGTCGCACGACTGCATTAGTGCAGACCAACAGGGGACTGCA
AAATGCGAGAAGTGCAACTTCTATGGAAGCTGTACATCTACATTGGGGCA
GCCCCTTACCATCTGGAGACCAGGCATATTATTCAGCCAGGCAAAAGATG
TGGAGTTTTTCGAAGATTTCCTTTACGGGCGATGGGATGGGGCTGTTACT
TTGTTCACAAGATACACGCTGACGTACAAGTGCCAAATGGTGTTGGGCGC
ATATCCACTGGACGTTCAGAACTGTGCCCTGGGCATTGACATGTATGGAG
CCCGTTTTCTATGGGGTCCAAAGACGGAGTGGTTCGATGAAGGCAAGCAT
CCGGTTGTCGTGAGGTCGTCTGGTATCAACGCGCAGTTCCGGCTTGTCAA
AGCACAAGCCTTCTCTTATGTCAACTCCTACATCGAACGTGGGAGAACCT
GTCTCTACGCAGCTTCGTCTTGTGACTTCACCTCAATGGAACAAGAGTGC
TTGTCGCACGACTGCATTAGTGCAGACCAACAGGGGACTGCAAAATGCGA
GAAGTGCAACTTCTATGGAAGCTGTACATCTACATTGGGGCAGCCCCTTA
CCATCTGGAGACCAGGCATATTATTCAGCCAGGCAAAAGATGTGGAGTTT
TTCGAAGATTTCCTTTACGGGCGATGGGATGGGGCTGTTACTTTGTTCAC
AAGATACACGCTGACGTACAAGTGCCAAATGGTGTTGGGCGCATATCCAC
TGGACGTTCAGAACTGTGCCCTGGGCATTGACATGTATGGAGCCCGTTTT
CTATGGGGTCCAAAGACGGAGTGGTTCGATGAAGGCAAGCATCCGGTTGT
CGTGAGGTCGTCTGGTATCAACGCGCAGTTCCGGCTTGTCAAAGCACAAG
CCTTCTCTTATGTCAACTCCTACATCGAACGTGGGAGAACCTGTCTCTAC
GCAGCTTCGTCTTGTGACTTCACCTCAATGGAACAAGAGTGCTTGTCGCA
CGACTGCATTAGTGCAGACCAACAGGGGACTGCAAAATGCGAGAAGTGCA
ACTTCTATGGAAGCTGTACATCTACATTGGGGCAGCCCCTTACCATCTGG
AGACCAGGCATATTATTCAGCCAGGCAAAAGATGTGGAGTTTTTCGAAGA
TTTCCTTTACGGGCGATGGGATGGGGCTGTTACTTTGTTCACAAGATACA
CGCTGACGTACAAGTGCCAAATGGTGTTGGGCGCATATCCACTGGACGTT
CAGAACTGTGCCCTGGGCATTGACATGTATGGAGCCCGTTTTCTATGGGG
TCCAAAGACGGAGTGGTTCGATGAAGGCAAGCATCCGGTTGTCGTGAGGT
CGTCTGGTATCAACGCGCAGTTCCGGCTTGTCAAAGCACAAGCCTTCTCT
TATGTCAACTCCTACATCGAACGTGGGAGAACCTGTCTCTACGCAGCTTC
GTCTTGTGACTTCACCTCAATGGAACAAGAGTGCTTGTCGCACGACTGCA
TTAGTGCAGACCAACAGGGGACTGCAAAATGCGAGAAGTGCAACTTCTAT
GGAAGCTGTACATCTACA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97345gene:BL97345Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97345_cuf6transcript:BL97345_cuf6-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97345_cuf6-E1BL97345_cuf6-E1-1564476830-263024Branchiostoma lanceolatumexon
BL97345_cuf6-E2BL97345_cuf6-E2-1564476830-263022Branchiostoma lanceolatumexon
BL97345_cuf6-E3BL97345_cuf6-E3-1564476830-263020Branchiostoma lanceolatumexon
BL97345_cuf6-E4BL97345_cuf6-E4-1564476830-263018Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000070genomeSc0000070:892211..897147 -
Properties
Property NameValue
Transcript idBL97345_cuf6
Biotypeprotein_coding