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transcript:BL97342_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97342_cuf1
Unique Nametranscript:BL97342_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97342_cuf1

>transcript:BL97342_cuf1-protein ID=transcript:BL97342_cuf1-protein|Name=transcript:BL97342_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=435bp
WTCRHHKCDKPCGEPCDRPRCDRPCRKTRRCGKCKKKHPCIGMCGEPCPD
KCRVCGSEELTKILFGMEDKDDAHFVQLEDCGHVIEVSGLDQWMDTTDRK
IQLQTCPKCKTPIRHNLRYGNTIKKTLAMIEKVKKKWHDDVQMAKTEATA
DKLMRKLRDADKERYCAETSKDLLRQMKRNRQYSLDEAAMYANKVLFLNR
LAELKRKRREYFLSGHIVLLDFEEMKKEVEEREKWLRRRTARVGEQEWEE
FGREMIRLNFLLKLRVLQEEIRKKGISLDDLNKESLVLAARRLTDLKPFT
ATREELVKHVMKKIEALMPELSLALLNVCDEEPVQVVKANGLTQGHWRAC
RXNGLTQGHWCACRNGHVYAIEDIGRTTMESPCPECHAEIEEVRHRGCQP
QASVGQPSGTGEGRSEARRVVRPDKATLKKRKSMA
Run BLAST on NCBI

mRNA from alignment at Sc0000070:734291..736568+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97342_cuf1 ID=transcript:BL97342_cuf1|Name=transcript:BL97342_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2278bp|location=Sequence derived from alignment at Sc0000070:734291..736568+ (Branchiostoma lanceolatum)
AGTGGACATGCAGACATCACAAGTGTGACAAGCCCTGTGGCGAACCTTGC GATCGTCCTCGATGTGACCGCCCCTGCCGAAAGACCCGGCGCTGTGGCAA GTGCAAGAAAAAACATCCATGCATCGGCATGTGTGGGGAACCATGTCCGG ACAAGTGTCGCGTTTGTGGTAGTGAAGAGTTGACAAAAATCCTCTTCGGT ATGGAAGACAAAGATGACGCCCATTTCGTGCAGCTGGAGGATTGCGGTCA CGTGATAGAAGTCAGCGGTCTGGACCAGTGGATGGACACCACCGACAGAA AAATCCAACTCCAAACCTGCCCGAAATGCAAGACACCAATACGACACAAC CTACGCTACGGTAACACCATCAAGAAGACACTGGCAATGATCGAGAAGGT TAAGAAGAAGTGGCACGACGACGTTCAAATGGCAAAGACAGAAGCCACCG CTGATAAGCTTATGAGAAAGCTCCGAGATGCGGACAAGGAAAGATATTGC GCAGAGACCTCAAAGGATCTCCTTCGGCAAATGAAACGCAATCGACAGTA CTCATTGGACGAGGCGGCCATGTATGCAAACAAAGTCCTCTTCCTGAACA GACTTGCTGAACTTAAGAGAAAGAGGAGAGAGTATTTTCTCTCTGGCCAT ATAGTACTTCTGGATTTCGAGGAAATGAAGAAGGAGGTCGAAGAGAGGGA AAAGTGGCTGCGTCGCCGAACGGCCCGTGTGGGGGAACAGGTAAAGCTAG AATTATTTGTACTACAATCGACTAAACTATCCATAATGATGTACATTCAA GTGCAAGGTGTCCGGTTAGATTTGATAAGTTCGCAATTCGCAAAGGGGCG CAATTCATATATTTCAATAATCTGATCATCTGAGCTTCGCAAAGTTGGTG CAACTTAGCTCGATTTGGCACAGTCCCGTGAGATACCCGCTTAAGTCACT CGGTACTCATCGCAAAATGGCTTCTGTTCACAGGAGTGGGAGGAGTTTGG GAGAGAGATGATCCGACTGAACTTTCTCCTGAAGCTCCGCGTCCTGCAGG AAGAGATTCGGAAGAAGGGAATCAGCCTGGACGACCTTAACAAGGAAAGT CTCGTCCTAGCGGCACGCAGGCTGACTGACCTGAAACCTTTCACCGCGAC CAGAGAGGAACTGGTAAAACACGTTATGAAGAAGATCGAAGCGCTTATGC CTGAACTAAGCCTAGCCCTGCTCAACGTCTGCGATGAGGAGCCAGTTCAA GTGGTGAAGGCCAATGGACTGACACAGGGACACTGGCGCGCATGTCGCAN CAATGGACTGACCCAGGGACACTGGTGCGCATGTCGCAACGGACATGTGT ACGCTATTGAAGACATTGGAAGAACCACGATGGTAAACATTGATTTGCAT ATCTTTGGCATATATCTTAAGCATATCGAAATATTTGGCATCTTCTTTGG TATAAAACATTATAACAGTATATCAGGGTTTTACTCCGTAAAAAAAGTTC ACAATCTCTTTCAACTGTTCTCGACAGGAAAGCCCTTGCCCGGAGTGTCA TGCTGAAATCGAAGAAGTTCGCCATAGGGGATGTCAGCCGCAGGCTTCGG TCGGACAACCGTCTGGCACCGGAGAAGGACGGAGCGAGGCACGCCGTGTA GTCCGACCAGATAAGGCCACTTTGAAGAAAAGAAAGTCTATGGCTTGAAT TTCGACGGCTAGGTGACATAGGCTTGTTAATCTAAACATTACAATTAAAC AACAAGTATGCTTGATTCCCTACCGTTTAAAACAGATTGATGGAAATATC AACTAACCAGTGTGTTTTATGACCTAGACAGTGTTACTTATTAACTAGTG TAATTCATCAACTAGTGTGATTTATTAATCTGACAATGGATGCCGTGAAC GACTGATTGATACTGAATCGATTATTTGTGGTATTGATCATAATTGATGT ACAAAGTGTTGTATCTTTTATTTTAATGTGATGGATAGTGAATTTTACGA GTCGTCCTTTCATTACTTTCAAATAGATCAAATAATACATATGGACGTTA ATTGACGTTTGGTGTCATTCAGTGCTGCCCAACACACCAATTATATTTGA AGGAATGCTGCATAGTTCCTAAGTCGAGTTTTGGTGTAATGAAAACAACA CACGACATTCTCCTCTAAAGGTAGTTAGAGATCATATGAAACCAAATTAC AACATTTATTTTTTTCATATCCAACAATATTCAACAACAATGATGACATT CATAAATCGGTTTTAATTTCATTCCAAG

Coding sequence (CDS) from alignment at Sc0000070:734291..736568+

>transcript:BL97342_cuf1 ID=transcript:BL97342_cuf1|Name=transcript:BL97342_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3924bp|location=Sequence derived from alignment at Sc0000070:734291..736568+ (Branchiostoma lanceolatum)
TGGACATGCAGACATCACAAGTGTGACAAGCCCTGTGGCGAACCTTGCGA
TCGTCCTCGATGTGACCGCCCCTGCCGAAAGACCCGGCGCTGTGGCAAGT
GCAAGAAAAAACATCCATGCATCGGCATGTGTGGGGAACCATGTCCGGAC
AAGTGTCGCGTTTGTGGTAGTGAAGAGTTGACAAAAATCCTCTTCGGTAT
GGAAGACAAAGATGACGCCCATTTCGTGCAGCTGGAGGATTGCGGTCACG
TGATAGAAGTCAGCGGTCTGGACCAGTGGATGGACACCACCGACAGAAAA
ATCCAACTCCAAACCTGCCCGAAATGCAAGACACCAATACGACACAACCT
ACGCTACGGTAACACCATCAAGAAGACACTGGCAATGATCGAGAAGGTTA
AGAAGAAGTGGCACGACGACGTTCAAATGGCAAAGACAGAAGCCACCGCT
GATAAGCTTATGAGAAAGCTCCGAGATGCGGACAAGGAAAGATATTGCGC
AGAGACCTCAAAGGATCTCCTTCGGCAAATGAAACGCAATCGACAGTACT
CATTGGACGAGGCGGCCATGTATGCAAACAAAGTCCTCTTCCTGAACAGA
CTTGCTGAACTTAAGAGAAAGAGGAGAGAGTATTTTCTCTCTGGCCATAT
AGTACTTCTGGATTTCGAGGAAATGAAGAAGGAGGTCGAAGAGAGGGAAA
AGTGGCTGCGTCGCCGAACGGCCCGTGTGGGGGAACAGGAGTGGGAGGAG
TTTGGGAGAGAGATGATCCGACTGAACTTTCTCCTGAAGCTCCGCGTCCT
GCAGGAAGAGATTCGGAAGAAGGGAATCAGCCTGGACGACCTTAACAAGG
AAAGTCTCGTCCTAGCGGCACGCAGGCTGACTGACCTGAAACCTTTCACC
GCGACCAGAGAGGAACTGGTAAAACACGTTATGAAGAAGATCGAAGCGCT
TATGCCTGAACTAAGCCTAGCCCTGCTCAACGTCTGCGATGAGGAGCCAG
TTCAAGTGGTGAAGGCCAATGGACTGACACAGGGACACTGGCGCGCATGT
CGCANCAATGGACTGACCCAGGGACACTGGTGCGCATGTCGCAACGGACA
TGTGTACGCTATTGAAGACATTGGAAGAACCACGATGGAAAGCCCTTGCC
CGGAGTGTCATGCTGAAATCGAAGAAGTTCGCCATAGGGGATGTCAGCCG
CAGGCTTCGGTCGGACAACCGTCTGGCACCGGAGAAGGACGGAGCGAGGC
ACGCCGTGTAGTCCGACCAGATAAGGCCACTTTGAAGAAAAGAAAGTCTA
TGGCTTGATGGACATGCAGACATCACAAGTGTGACAAGCCCTGTGGCGAA
CCTTGCGATCGTCCTCGATGTGACCGCCCCTGCCGAAAGACCCGGCGCTG
TGGCAAGTGCAAGAAAAAACATCCATGCATCGGCATGTGTGGGGAACCAT
GTCCGGACAAGTGTCGCGTTTGTGGTAGTGAAGAGTTGACAAAAATCCTC
TTCGGTATGGAAGACAAAGATGACGCCCATTTCGTGCAGCTGGAGGATTG
CGGTCACGTGATAGAAGTCAGCGGTCTGGACCAGTGGATGGACACCACCG
ACAGAAAAATCCAACTCCAAACCTGCCCGAAATGCAAGACACCAATACGA
CACAACCTACGCTACGGTAACACCATCAAGAAGACACTGGCAATGATCGA
GAAGGTTAAGAAGAAGTGGCACGACGACGTTCAAATGGCAAAGACAGAAG
CCACCGCTGATAAGCTTATGAGAAAGCTCCGAGATGCGGACAAGGAAAGA
TATTGCGCAGAGACCTCAAAGGATCTCCTTCGGCAAATGAAACGCAATCG
ACAGTACTCATTGGACGAGGCGGCCATGTATGCAAACAAAGTCCTCTTCC
TGAACAGACTTGCTGAACTTAAGAGAAAGAGGAGAGAGTATTTTCTCTCT
GGCCATATAGTACTTCTGGATTTCGAGGAAATGAAGAAGGAGGTCGAAGA
GAGGGAAAAGTGGCTGCGTCGCCGAACGGCCCGTGTGGGGGAACAGGAGT
GGGAGGAGTTTGGGAGAGAGATGATCCGACTGAACTTTCTCCTGAAGCTC
CGCGTCCTGCAGGAAGAGATTCGGAAGAAGGGAATCAGCCTGGACGACCT
TAACAAGGAAAGTCTCGTCCTAGCGGCACGCAGGCTGACTGACCTGAAAC
CTTTCACCGCGACCAGAGAGGAACTGGTAAAACACGTTATGAAGAAGATC
GAAGCGCTTATGCCTGAACTAAGCCTAGCCCTGCTCAACGTCTGCGATGA
GGAGCCAGTTCAAGTGGTGAAGGCCAATGGACTGACACAGGGACACTGGC
GCGCATGTCGCANCAATGGACTGACCCAGGGACACTGGTGCGCATGTCGC
AACGGACATGTGTACGCTATTGAAGACATTGGAAGAACCACGATGGAAAG
CCCTTGCCCGGAGTGTCATGCTGAAATCGAAGAAGTTCGCCATAGGGGAT
GTCAGCCGCAGGCTTCGGTCGGACAACCGTCTGGCACCGGAGAAGGACGG
AGCGAGGCACGCCGTGTAGTCCGACCAGATAAGGCCACTTTGAAGAAAAG
AAAGTCTATGGCTTGATGGACATGCAGACATCACAAGTGTGACAAGCCCT
GTGGCGAACCTTGCGATCGTCCTCGATGTGACCGCCCCTGCCGAAAGACC
CGGCGCTGTGGCAAGTGCAAGAAAAAACATCCATGCATCGGCATGTGTGG
GGAACCATGTCCGGACAAGTGTCGCGTTTGTGGTAGTGAAGAGTTGACAA
AAATCCTCTTCGGTATGGAAGACAAAGATGACGCCCATTTCGTGCAGCTG
GAGGATTGCGGTCACGTGATAGAAGTCAGCGGTCTGGACCAGTGGATGGA
CACCACCGACAGAAAAATCCAACTCCAAACCTGCCCGAAATGCAAGACAC
CAATACGACACAACCTACGCTACGGTAACACCATCAAGAAGACACTGGCA
ATGATCGAGAAGGTTAAGAAGAAGTGGCACGACGACGTTCAAATGGCAAA
GACAGAAGCCACCGCTGATAAGCTTATGAGAAAGCTCCGAGATGCGGACA
AGGAAAGATATTGCGCAGAGACCTCAAAGGATCTCCTTCGGCAAATGAAA
CGCAATCGACAGTACTCATTGGACGAGGCGGCCATGTATGCAAACAAAGT
CCTCTTCCTGAACAGACTTGCTGAACTTAAGAGAAAGAGGAGAGAGTATT
TTCTCTCTGGCCATATAGTACTTCTGGATTTCGAGGAAATGAAGAAGGAG
GTCGAAGAGAGGGAAAAGTGGCTGCGTCGCCGAACGGCCCGTGTGGGGGA
ACAGGAGTGGGAGGAGTTTGGGAGAGAGATGATCCGACTGAACTTTCTCC
TGAAGCTCCGCGTCCTGCAGGAAGAGATTCGGAAGAAGGGAATCAGCCTG
GACGACCTTAACAAGGAAAGTCTCGTCCTAGCGGCACGCAGGCTGACTGA
CCTGAAACCTTTCACCGCGACCAGAGAGGAACTGGTAAAACACGTTATGA
AGAAGATCGAAGCGCTTATGCCTGAACTAAGCCTAGCCCTGCTCAACGTC
TGCGATGAGGAGCCAGTTCAAGTGGTGAAGGCCAATGGACTGACACAGGG
ACACTGGCGCGCATGTCGCANCAATGGACTGACCCAGGGACACTGGTGCG
CATGTCGCAACGGACATGTGTACGCTATTGAAGACATTGGAAGAACCACG
ATGGAAAGCCCTTGCCCGGAGTGTCATGCTGAAATCGAAGAAGTTCGCCA
TAGGGGATGTCAGCCGCAGGCTTCGGTCGGACAACCGTCTGGCACCGGAG
AAGGACGGAGCGAGGCACGCCGTGTAGTCCGACCAGATAAGGCCACTTTG
AAGAAAAGAAAGTCTATGGCTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97342gene:BL97342Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97342_cuf1transcript:BL97342_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97342_cuf1-E1BL97342_cuf1-E1-1564476830-262850Branchiostoma lanceolatumexon
BL97342_cuf1-E2BL97342_cuf1-E2-1564476830-262852Branchiostoma lanceolatumexon
BL97342_cuf1-E3BL97342_cuf1-E3-1564476830-262855Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000070genomeSc0000070:734291..736568 +
Properties
Property NameValue
Transcript idBL97342_cuf1
Biotypeprotein_coding