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transcript:BL97341_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97341_cuf2
Unique Nametranscript:BL97341_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97341_cuf2

>transcript:BL97341_cuf2-protein ID=transcript:BL97341_cuf2-protein|Name=transcript:BL97341_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=143bp
RLYGDVPVRPPCARPQPAGLDVTGGPYTHGAVAADALECSAIGRDILKKG
GSAVDSAIATLACVELIHGHSAGLGGGLIMTVYNKETGTALVINARETAP
SRASTDMFGTNNSTAQFGGLAVAVPGQVRGLWEAHQRFGKLPW
Run BLAST on NCBI

mRNA from alignment at Sc0000015:1195610..1199307-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97341_cuf2 ID=transcript:BL97341_cuf2|Name=transcript:BL97341_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3698bp|location=Sequence derived from alignment at Sc0000015:1195610..1199307- (Branchiostoma lanceolatum)
CGGTTGTACGGGGATGTCCCCGTGAGACCACCGTGCGCGCGTCCCCAGCC GGCCGGGCTGGACGTCACCGGCGGCCCGTACACACACGGGGCGGTCGCCG CCGACGCTCTGGAATGTTCTGCGATCGGCAGGTACGTGACTTGAACCTCT ATCGACAGTGGTTATAACGCCAGTGCTGAAGTCGTAAAGAACGATTGAAA CTCTACTGCAACACAATTTTATGAACAGCGAGGTTTCATAATTATGACTC TTGAAAAGTTCGTTTGTACGACGTGTGAAAAGCCCCTTAACTTAGCCGAC CATAGCCTCTCAACCAGTTCTCCTAATAAAGTCAGTCGTGAGCAATGTCA TCTGTGGGTAGCAGTTGGTCTACGAGGTTGAGAAAGGGTCCGATAGCAAT CGGGACACGGTTGGGAGTAAGTCTTGAGGTTAACAATATGCTGTCATGTT CTGTTTGTGACATGGTTGTGGCACAGTCGTCGCGACAGATAGGCTTGGCC TAAAAATGGTCCGACTGCTCCCAACCCACCGCAGACTTTGATTAAGAGGT GGACGGGACGAGGTCACAGGACGGCCCTGAGGGTGACAGGGACTTTACTG AGTGTATGCTTGGACAAGGGTAGGGGGGAGGGTGGAAGGCCGAACAAATG TTCGCGGTGTAATAACAGCGAAAACAGACTTGATTATTTATCCCTTTTAT TTAGTAAAGAAAAGTATAGCATCATTAAATCCGGGATAAACTGAATAGCC GGAATAGTGGTATGGTGATGGTTTTATCCAATATTTTCGCCAGTAAGAGA TTATGAAAACTCCTTTGGTGAAAAAAGGGGATAAGACCCCCGCCATCCCC TCTTTTCGCCAGTATGAGATTTTCACCGTAAGGAGTTTTTATAATCTCTC ACTGGGGAAAATATGTGATAAACCATCACAATACCACTATTGTGACTATT TTGTATATCCCGTATTTAATGCTACTATACAATTCAGTACTAAATAATAG GGATAAATAATCATGTCTGCGAAAACCGCGAATACAAAACCACGGTATTT ACGGTAAATATGGTAAAGAGGGACCATATCTGGGACTTACAAACGTCTCT ATAAAAGTAAAACTCACATGGATTAATGTCCTTTAATGTTGCATCGAGTT CTAAACCTTGTTGCATTATGTTTCATGTCTGATGACTCAAATCTTAGATT TAAGAAGAAATACCACAGGCCGTATGATTTTTTAAAAAAATACAGAATTT TAACAAATACAGTTAAACCTTTATAGCTGATATTAATAATCCTGTCTTTA GCAACCACCTGTCGATATAGACCAGGTTTTATCGGTAGCCTGAGTGGTCT TCTTGGACAGTTTTGACAGTAGGTTGTTTTTCAGGGACATTTTGAAGAAG GGCGGTTCGGCTGTGGACAGCGCCATTGCGACTTTAGCATGTGTGGAGCT GATTCACGGGCACAGCGCCGGGCTCGGTGGGGGTTTGATCATGACAGTAT ACAACAAAGAGACAGGTACGGCCCTGGTCATCAACGCCCGGGAAACAGCC CCTTCCAGAGCCTCCACTGACATGTTTGGGACGAACAACTCCACGGCACA GTTCGGTAAGTCAGGGCAATGAGCCGCCGGTCGAATAGCTAGTAGTCGAG CTGCCGGTCAGATTAGTCGAATCAGTGATCTAGGTCTTATGGCCTTCTGC ATCCCATTTTCTGCGACACCAATTCTTGAAAAACTAGTTTTTTTCTACCT GAGGTTACTCTCAGACTGGTCTTCATACTAGACTAACTACGCTTGCTAAA GGGAGAACCATGTCCCAGTAGAGTTTGGCCACCACAGGGTTTCTTTTTCC TCACCACGGGCTGTCTTACCTTTGCGTTTATCACCTCCATGACAATGGAC GTTGTTTTTGGGCTGTCTGTGTGTCTGACTGTCTGTGTGTCTGTCTGGTT GTATTTCCAGATGTTTGTGGTCAGTATAACTTAAGAACCTCTGCGTGGCC ATGGATTATGATAATATTTTGTATGTAGGTAGGTGTTGGGAAGATGGTCA GGGTCGCCCCCCCCTTGTAAACTGAAATCTTTATTGACACGACAAAAGTA CAGCGACTTTCGTAAGGTCTTCTACAACTATAACGTTGGGTAACCTAAAT TCGGGATTTTTCCGATAATGGTTGACTGAAATCAATCTAGCAGAACAATA AACCATCTTTTTTTCTATTATTCTGTCAGTATCATGTACTATCTTTGCAC TAATCATATATATGGTAGATTTTGTCTCTAGTCGCGCTGACACCATAATA TTTCAACTTCAAACTACCGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTT AGCTGGATGCCGTAGCAATGGTAATACTACTATGTCCATGTGTTCCTTGT TGTGTTAGGAGCAAACTTTGAGGAAAATATCTTCCTCAGTCCACTATCAC ACGCAGCATTTAGACAAAAAAGTGTTCCTCACAAACCTTTGTCGTCTGCT TGACAACAGGATTCTGGTTAACAATATGGCGGCGGGAAAATACACGTGCC GTAGGTTGTAGCAACAGAGAGGAGTTTTGATGATTGATCACACTAAGAAT CCAGTTGCAGGTTAGCAAAAGAGATTGTAATAAGTTGTCTTATAAATAAT TGTGTTTAGCAGGCAGGAGATGTGACATTTGTCTTATAAACCAGCGAACA ACCGTGCTGGGTAATTCTCCCACGAAGCCCCCAGACTCTGTCAATAAGGG ACGGAGAGTTGTTGACGTCGCCAACTTCTAATGCATGGTTATCGAAGCTT TTCAGCCAGTGTTCTGAATACGTTAGTCTATCTGCTTTGCATTGCTGGCG TTATAACTGATTTTGCATCTAGCACATATCCCTAAATACCCCGTTTTCGA AAAATCCCGACTTTAAGTACCCCACGAATTTAGGTTACCCAACGTTACAT GCAAACAACAAACAATGGGATACAAAATGATTAACCTAAGTACAAGTATA TGAATACTTCACAACATGTCGAGTTTAACGTATCACTTACACTACTAGTT GTAAGATCTAAACATTCTTTTATATATTTATGTGACCTTGGTACTGTTGT TTTTTAATTTTCATTTTGTCCCGGACATGTTATGTTGCTGATGAATTTTG TGGCAGATAGCTTTGATGTAAGTCTGAAGTCGTTTAGGTTTGCCCCCCCT AACAGCTTGTTCATCCTATTTTTGCCGAATTCTACTGTCCATAACACCTT AGGAATGACTAGTGGCTTAGTCGAATCAGTGACTTAGTTATGACCTTTAG AATCTTATTGCCTGCGGCACCAATTCTTGAAGAACTAGCTTTGTTTCTGC CTGAGGTTAGTCTGGTCTTCATACCACATGCACACACAGAAACAAAATAA AACTAACTACCAACCCTCCTGTGGAACACAATTATTTGTCTGTGTGCATC GTTATATTTATCTCCATATAAATAAAATATTTGTGTTTTCCGTGTGTCAG TCTGTGTGTTTGCTTGTTCTTCCATATTAAAGAATATTCTATATAAAAAA AGAGATGTTTGTGTTCCACAGGAGGGTTGGCTGTGGCCGTGCCGGGCCAG GTCCGCGGGTTGTGGGAGGCCCACCAGAGGTTCGGGAAGCTGCCGTGG

Coding sequence (CDS) from alignment at Sc0000015:1195610..1199307-

>transcript:BL97341_cuf2 ID=transcript:BL97341_cuf2|Name=transcript:BL97341_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1287bp|location=Sequence derived from alignment at Sc0000015:1195610..1199307- (Branchiostoma lanceolatum)
CGGTTGTACGGGGATGTCCCCGTGAGACCACCGTGCGCGCGTCCCCAGCC
GGCCGGGCTGGACGTCACCGGCGGCCCGTACACACACGGGGCGGTCGCCG
CCGACGCTCTGGAATGTTCTGCGATCGGCAGGGACATTTTGAAGAAGGGC
GGTTCGGCTGTGGACAGCGCCATTGCGACTTTAGCATGTGTGGAGCTGAT
TCACGGGCACAGCGCCGGGCTCGGTGGGGGTTTGATCATGACAGTATACA
ACAAAGAGACAGGTACGGCCCTGGTCATCAACGCCCGGGAAACAGCCCCT
TCCAGAGCCTCCACTGACATGTTTGGGACGAACAACTCCACGGCACAGTT
CGGAGGGTTGGCTGTGGCCGTGCCGGGCCAGGTCCGCGGGTTGTGGGAGG
CCCACCAGAGGTTCGGGAAGCTGCCGTGGCGGTTGTACGGGGATGTCCCC
GTGAGACCACCGTGCGCGCGTCCCCAGCCGGCCGGGCTGGACGTCACCGG
CGGCCCGTACACACACGGGGCGGTCGCCGCCGACGCTCTGGAATGTTCTG
CGATCGGCAGGGACATTTTGAAGAAGGGCGGTTCGGCTGTGGACAGCGCC
ATTGCGACTTTAGCATGTGTGGAGCTGATTCACGGGCACAGCGCCGGGCT
CGGTGGGGGTTTGATCATGACAGTATACAACAAAGAGACAGGTACGGCCC
TGGTCATCAACGCCCGGGAAACAGCCCCTTCCAGAGCCTCCACTGACATG
TTTGGGACGAACAACTCCACGGCACAGTTCGGAGGGTTGGCTGTGGCCGT
GCCGGGCCAGGTCCGCGGGTTGTGGGAGGCCCACCAGAGGTTCGGGAAGC
TGCCGTGGCGGTTGTACGGGGATGTCCCCGTGAGACCACCGTGCGCGCGT
CCCCAGCCGGCCGGGCTGGACGTCACCGGCGGCCCGTACACACACGGGGC
GGTCGCCGCCGACGCTCTGGAATGTTCTGCGATCGGCAGGGACATTTTGA
AGAAGGGCGGTTCGGCTGTGGACAGCGCCATTGCGACTTTAGCATGTGTG
GAGCTGATTCACGGGCACAGCGCCGGGCTCGGTGGGGGTTTGATCATGAC
AGTATACAACAAAGAGACAGGTACGGCCCTGGTCATCAACGCCCGGGAAA
CAGCCCCTTCCAGAGCCTCCACTGACATGTTTGGGACGAACAACTCCACG
GCACAGTTCGGAGGGTTGGCTGTGGCCGTGCCGGGCCAGGTCCGCGGGTT
GTGGGAGGCCCACCAGAGGTTCGGGAAGCTGCCGTGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97341gene:BL97341Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97341_cuf2-E1BL97341_cuf2-E1-1564476830-124650Branchiostoma lanceolatumexon
BL97341_cuf2-E2BL97341_cuf2-E2-1564476830-124648Branchiostoma lanceolatumexon
BL97341_cuf2-E3BL97341_cuf2-E3-1564476830-124646Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97341_cuf2transcript:BL97341_cuf2-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000015genomeSc0000015:1195610..1199307 -
Properties
Property NameValue
Transcript idBL97341_cuf2
Biotypeprotein_coding