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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97338_cuf4 >transcript:BL97338_cuf4-protein ID=transcript:BL97338_cuf4-protein|Name=transcript:BL97338_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=214bp
VFSECVVGQYRCADGVTCIDAWKRCDGNRDCRDGSDEDEDKCSCQDIPTS
LSICRRLEYQRMALPNPLNYNHTTVAQVENSDKFSNLSILANSECHPRVR
DLVCATIVPRCETSPDLRQQLPCRSWCEEVDYSCSEEGAWSSFPSCEIFP
YTNCNNIIPSKTPEGEECYDGNGANYRGNEARSALSGADCVQWDDDPSTI
AEYPWANLVDNKCR Run BLAST on NCBI mRNA from alignment at Sc0000015:229829..237550+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97338_cuf4 ID=transcript:BL97338_cuf4|Name=transcript:BL97338_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=7722bp|location=Sequence derived from alignment at Sc0000015:229829..237550+ (Branchiostoma lanceolatum)
AGTGTTTTCTGAGTGTGTGGTCGGCCAATACCGGTGTGCTGACGGGGTGA
CCTGTATAGACGCCTGGAAACGGTGTGACGGAAACAGAGACTGCAGAGAC
GGGAGTGACGAGGATGAAGACAAATGTTGTGAGTAAAGTTCCTAATCTAA
GCAGACTTTACGCCCAAATTAGTTACTCAAGCAACTGGATAAGGTTTCAA
AATCGTATCCAGTTACTTGAGTAGCTTTTTTTGGCGTATCTTACTACCTG
GATGTCTAACCTTCATCAACGTATATTAAGTAGACTTTATTTTGAATCAT
TCATAACGTTATACAATAGTTTTAATGCACATGTAATGCAATTGTTATAG
CTCTTTCTGCTGTCCATGTCAAAATTCCATTGTAATGCCTTATCTTTGTC
AGCAGGGCTAGCCCTTTGTAATAACAACAGGCTAGTTGGGCAGCCCTGCC
TGTGTGTGCTGAACAGCCAAACTAATAAATGAAAAAATAATCTAAGTATG
AAATCATCCAAAGACAAAATAATAGGAATAAACCCACAACATTTTGCTAC
AGGGCTCGGTCTAAGTTCAAATGGTAACGTCTTCAACATGTTGACGTTAT
ACTTCTTTGCCGTTTGGTCCAGCGTGTCAAGATATCCCCACGTCCTTGTC
GATATGCAGACGCCTTGAGTACCAACGGATGGCACTCCCCAACCCACTGA
ACTACAACCACACCACGGTAGCCCAGGTTGAAAACTCTGACAAATTCAGC
AACCTCAGCATCCTCGCAAATTCCGAGTGTCACCCCCGTGTCAGAGACCT
CGTCTGCGCCACCATCGTGCCGCGGTGCGAGACCAGGTACACCAGTCCTT
TTTTAACTTACTCGTCGCTATTGGCTAACTTGTCGTTACCACACATTTGC
CAGATTCGTTAACGTCTACATAATCATTAAAGGAATAAAGAAATATAGAT
CGCGCGGAGCTTGTCTGTAGATAACGTCACAGCACTCCCTGTCGCGCACC
CGTAGCTTGAACTTGAACTTTGAACTTTATTGAATCACCACCTTGCAGGC
ATTTAGCCTGAATTGTGTTGGTGTTTACAAACTTCGTTATCAACAATATT
TAAAAATGTTATCCAATTCTGAATACATACTTAAAATTCATATATAACAA
TTTTGCTTAAAATTACAAATAACAGACATTAACTATACAATAATTGCACG
ATGAGTTAAGCAGCTTGTCCGAGAGGTGTTGAAAATCGGACTTTTTGAAA
ACCCGTATTAGCTCTATTTCCCCATCATGGCGATTCAAAGCTATTTTAAC
ACGTTTCAATATATGTGCAGTTTTTGTTTGTATATGTGTTTTAGACAATT
AATCATGTTTCTTTAGTCCTAATTAACCAATTCCGTGCAATGCTTATACA
CAATGATAAATGTATATAACGTCATATCGGTTTGGATACATTTGGGCGGA
GTTTAACTAGAGTTACGTATACGTATTTGTGCTACATATACTTCAGGTTT
GCTATGTTAGTTTAGCGATGACGGGATCTTTTTATGAATATGAATCGGTA
TTGAATTTTTCTTTTTATTTGAGTTGAATGTGTGATAGTTGTGTGCCGAT
TTGTTGAAAATAGAGAGAACGCTAGCGATCCCCCAAAACTACGAAGCAGG
AACTGTGTCAAAAATATCATATATATATATCTTAAATAGATGTAATTCTA
AAACATATATGTTTGAGAGAATGATATATATATTTTAAATAGATGATATT
TTAAAACATATATGTTTGAGAGAATGACATATATTTTGAAAAGATAAGAT
TTTAAAACATATATGTTTGAGAGGATGATATAGACTTTTTAAAACAATTC
ACATTTTATATCAATATCTTTTAAAAACAATACGTATTCTAGATTAACAT
CTAAAAATCAAACATATGTTGTATACAAAAACATGCCTGAAAGCATATTG
TTGGCTAAAACATGTGTTCCCAAAACCCCTATCATTTCTGAAAACATATG
TTGTTCTCATAAACATGTGTTTCCAAAACCCCTATCATACCCGAAAACAT
GTTGTTCACAAAAACACGTGTTTCCAAAACCCNACGCGTTTCCAAAACCC
CTATTGTTCCTAAATGTATATATTGTTCCAAACGCGGCGCCGAATCTGTG
TCAAAAAGGTCTCGCACCAGGTTTACGGGAGCGTGTAAGTGTCCCGAATA
TGCAAACCAGATCTAAGCTATACTAAACATTCGCCGTCACTTTATTAACT
GAATTAGAACACATTGTCTATAACCAATGATATACGTATTGTTTCGTGGT
GCAGTTGGTGGTCAGTTTATTTTTTTATATTTTTTTATATGATATCACGC
TACTATCGTACGTTTGTAATCGAAATGTTGCTGTATCTATGGTTTAGCCT
TTTGTCAGCTCTCTAAGAAGTTACGAAACCCTGGTATCGAAACTCTGTCA
GCGATATGGCGACGTCACCACCGGGCGGGGCGGCGACAACGGCAGCGCAG
CGGGCGGGGACAAGGGTACCCGGCGATGCGGGGACAACGTACGGTACCGG
GCGGACGGGGACAACGGCACCGGCCGGGCGGAGCACCCGGCGGTGCGGGG
ACAGGGTTACCGGGTGCACCTGACGGGTCGGGGATGGTTGGAGGTTTCAG
TTGGCCAACGTCCGGTATATCGACGGGGCAGGGACTTAAAGTTTGTTAGG
GAACTTTGCAATTGGACCAAATATTCCTGATTGAAAACTTGTAACGGTGC
ACACCCCCGTGGTTGTGCGATAGCCTCTACCAGAGGGCCTGCATGCCCTT
TTTCGTATATTAAAGGCGTAATCAGGCCTTTTTAGACTTCGTAATCCGTA
ATCATCCACCCAAATTCAACGTAATTCGTAATCAGTACATTGGCCGTAAC
GCGTAATTGGTCGCTTTGATTCTACGTAAAACGTAGGCAGTTACCTTTAT
GCAACGTAAAACGTAATCTATGAATTACTAGTAAAGCGTAGGCAAATTTC
CAGCAAAGTCTCCCGGCAAAGCTGCCCCTCAAAATGCAGGAAATAGCATT
TCAGCGGGTAAAGATTTCAAAATCTTTCCGTGAAACATGCCCCCTGACCC
ACTTAGAATTGTCGCGCCTCTGGTGAAAAATATGTTCTGAGGGCGTTGCC
CCTGAATATCAAGCTGGAATCATTGTGAATTTTTCAATCAAACAGATGCC
ATAAAACATAGCTTAGACTATCAGCCAAATGTACCCTAAAAATGCAGGAA
ATTGCGTTTCAGAGGGTAAAGATTTCAAAATATTCACGGGGTGCATGCCC
TGGGGCCCACAGTCGATTGTTACATGTACGCCTCCGGCGAAAATATGTTG
GGAGGGCAAACAATCTAAGATCTAACAGAAATCCTTGTGTACTTTTCACT
ATGAGTGCAAATATTGCCCCTCAAAATTTATTTGAGCGGGTCGAGATTTT
ACCATTTTCCCGGACCCACCTACAATCACCGGGCCTCCGGCGCAATATAT
GTCGGGAGGGCATCGCGCACCATACCATCAAACTCTTGCGTATTTTTTTT
CACTTATAGATATGCCATCAAACATAGCTTAGTGTACCAGCAAAATTTGG
CACTCATATTAATCAAGGATATAGCGTTTGAGGGGGTCAAGATTTTCACA
ATTTTCCTTCGGCGTCGACGTGGTCAACGTACGTTCAGCAATATCTTGCC
GTCGCCTCCCATACATACGAAATTCCCTGCCGCCGTCACGGCTACTCATT
TTAGTTATAGTCGTTTAGTCTGGTCATCAATAGATTCATTGTCACCACGA
TTAATATAGAAACCAATAGTTTTGACGCAGAATTAGATAGTTGAATCGTG
CGTTAAGTGTTTATGTCGGTTGGAAAGCCCCATGAATTAACGTAATCAGC
TCTAAAAACTTAACGTAATTCGTAATCGGCGGCAAAAATTTTCCGTAATT
CGTAGTCACTACCCCCATGCAGGCCCTCCTACCAGGCTCCGCGGATCGCT
GGGAAAATATAGTAGACTGAATTGGCCTAACACGTGGGTCGCCTATTGAA
CTTCTTTGCATAGCTGACTACCCTTGGCATACTATTCACTCTATTAGGCC
AATTTCTACTATTTTCCCAGCGACCCGCGGAGCCTGGCTATAGAGGCTAT
CCCTTTCCCCGAGATTGTAGTTGTAGGTTTGTAGCTAGTCTCCAAGCAGA
TCCGCGGAGCCTGGTAGAGGCTATCGCAATACCACAGGGGTGTGCACCGT
TACAAGTTTTCAATCAGGAATATTTGGTCCAATTGCAAAGTTCCCTAACA
AACTTTAAGTCCCTGCCCCGTCGCTATACCGGACGTTGGCCAACTGAAAC
CTCCAACCATCCCCGACCCGTCAGGTGCACCCGGTAACCCTGTCCCCGCA
CCGCCGGGTGCTCCGCCCGGCCGGTGCCGTTGTCCCCGTCCGCCCGGTAC
CGTACGTTGTCCCCGCATCGCCGGGTACCCTTGTCCCCGCCCCGCCCGCT
GCGCTGCCGTTGTCGCCGCCCCGCCCGGTGGTGACGTCGCCATATCGCTG
ACAGAGTTTCGATACCAGGGTTTCGTAACTTCTTAGAGAGCTGACAAAAG
GCTAAACCATAGATACAGCAACATTTCGATTACAAACGTACGATAGTAGC
GTGATATCATATAAAAAAATAAATAAATAAACTGACCACCAACTGCACCA
CGAAACAGTACGGTATATCATTGGTTATAGACAATGTGTTCTGATTCAGT
TAATAAAGTGACGGCGAATGTTTAGTATAGCTTAGATCTGGTTTGCATAT
TCGGGACACTTACACGCTCCCGTAAACCTGGTGCGAGACCTTTTTGACAC
AGATTCGGCGCCGCGTTGGAACAATATATACATTTAGGAACAATAGGGGT
TTTGGAAACACGTGTATTTGTGAACAACATGTTTTCGGGTATGATAGGGG
TTTTGGAAACACATGTTTATGAGAACAACATATGTTTTCAGAAATGATAG
GGGTTTTGGGAACACATGTTTTAGCCAACAATATGCTTTCAGGCATGTTT
TTGTATACAACATATGTTTGATTTTTAGATGTTAATCTAGAATACGTATT
GTTTTTAAAAGATATTGATATAAAATGTGAATTGTTTTAAANTTGATTTT
TAGATGTTGATCTAGAATACGTATTGTTTTAAAAAGACATTGATATAAAA
TGTGAATTGTTTTAAAAAGTCTATATCATCCTCTCAAACATATATGTTTT
AAAATCTTAACTATTCAAAATATATATGTCATTCTCTCAAACATATATGT
TTTAAAATATTATCTATTTAAAATATATATATCATTCTCTCAAACATATA
TGTTTTAGAATTACATCTATTTAAGATATATATATGATATTTTTGACACA
GTTCCTGCTTCGTACAAAACAACCCTCCCAATGAAATGGTATGACTACCC
TGCTACGTAACAAAATCAAGATGGTGACCACTACACATGCCGACGAAACC
CTCAAAGGTTTTGCTACGCAAACCTGTAAATACAAAATGGCGATCTGTGT
CGTCACAATTCAAGATGGCGGCCCTCACACTACCAAACGGATCCTACATA
GGTTTTGCTACGCAAACCTGTAATTAGACGCGCCCGGGAGCACGCGGTCT
GGTACGCCCCGGGGCTCAGTTCCGTCTAGCGACCACGTAGCGAGGGCAGA
CTTTTGTATATACATATACGCCATACCGGTTTATCAACTATTGACTTTTT
GCCTTTGTTTAAGTCCTGATCTCAGGCAGCAGCTGCCCTGCCGGTCTTGG
TGTGAAGAGGTGGACTACTCGTGTTCGGAGGAGGGCGCTTGGTCAAGTTT
TCCAAGCTGTGAAATTTTCCCTTACACCAACTGCAACAACATCATACCTT
CAAAGACTCCGGAGGGCGGTAAGTCATCGGCAGTACGTGCTTTATGTATG
TCAGATGTGGCAAACCAGGCTATGTTGATTTGATTATTTGGATGACATCC
TATGGGAACCACCAAACTGATGCAAGCGTGCGAATGAAGAAAACATGTTT
AAAGAAAACAAAAGTTGCCTTTATTATAAAATCTACGTGGTCAGGAAGGT
TGACTCAACACATTGAGAAAGCTATAACAAATAATGGATTCTCCATTTTT
GTTCTTTGACATCCTCTTCTTTGATTTTGGTATTTTTCGACTTAAGCATC
CTTTTTTCCGAAGTAATTTTTTTTTTGCAATTTACGGCAAATATCTGCTA
ATTATCTCCATGAAAAAAGGCTTTTTCATGGATATACTGTTTTGCTTGCG
TTTGGTGTCTGTGTGTATGTTTGTGTCACCGGTCGCTTAAAGTCACCATA
ACTGTAAAACCTGTACATGGATTGAAATGATTTTTGGTATGTGGGTGGGT
GTTAGGTGGAGGAAGGTCGATTTTGGGTCTCCTAGCATGTGTGACTGGAA
CTGCAATGGCGTATTTGTTAAAATCTTAAATGTAGAAGAACTGAAGAGTG
GATGGACAGATCGTCATGTTCTTTGGTACACAGGTAGGTTAGATCAAGTT
GTACACACTCAAGTGCAAACTATGCAGATGAGACCGAATTTGCATAAGTA
AGGAGGTAAATCGTTTGCATGGGTGTCGTCGTATGCTTAAAGTCAGCATA
ACTGTAGAACGTGTAGATGGATTGTAGTGATATTTGGTATGTGGGTATGC
GCTGGGAGGAGAATGGTCAAGGTCGATTTTGGGCCCCCTGGTTTGTGTCC
CTGGAACTGCAATGGCCTATTTGTAAAAATGTTCTAAAGGGGTTTAACTG
AAGAGAGGAACAACAGATTTTCATGTTATTTGGTACGTTGGTAGGTTGGA
TGGAGATGTACACACTGAAGTTCAAATCATGCGAAGTTATTGTGTTTGTG
TGTGTGTGCGCGTGTGTGTATGTTTGTGTCACCGTGTTTGTATGTATGTG
TCACCGGAAGCTTAAAATCAGCATAACTGAAGAACGTGTGGATGGATTGA
AATGATATTTGGTATGTGGGTAGGTGCTGGGAGGAGAAAGGTCAAGGTCG
ATTTTGGGCCTCCTGGTATGTGTCACTGGAACTGCAATGGCGTGTTTGTA
AATATTTTCAAAGGAGAATAACTGAAGAAAGGAGCGACAGATTTTAATGT
TATTTACTATGCAGGTAGCTTAAGCAGAGATGTATACAATGAACTGCAAA
TTATGCAAATTGGACTAATTTGCATAAGTAATGAGGAAAATCTATATCTG
CAGTGTTGTCATGTGGCACCCCACCTGTCAGTAGCTATTTATAGCGAAAG
TACACATAGCGAAAGTAGGTCAGACTTCTCCCCTTGCAGTGTGGGTCATA
CCATTGAGCGATATAGAATGGGGGGAACTGGTTTAATAGAAAAACAACGT
TTCATGGAGATTTTGGGTCCTAAGACTCTTGTTTTGAAGCTGCTTTGCGT
AATTTACCGTTTGGCAGAAAACTTTTTTCGACAATTGATGCGCGCGGATG
TCATACATAAAATCAAATCCACTTAGCCTTAGTGAAAAATAAGCCAAGGC
TGACGTTTTGATTTCTTCCGTGATAGAGGAGTGCTACGACGGAAACGGTG
CAAATTACCGAGGGAACGAGGCCAGAAGTGCTTTGTCCGGGGCAGACTGC
GTCCAATGGGATGATGACCCAAGCACCATAGCGGAGTATCCCTGGGCAAA
CCTCGTGGACAACAAATGCCGC Coding sequence (CDS) from alignment at Sc0000015:229829..237550+ >transcript:BL97338_cuf4 ID=transcript:BL97338_cuf4|Name=transcript:BL97338_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=2568bp|location=Sequence derived from alignment at Sc0000015:229829..237550+ (Branchiostoma lanceolatum)
GTGTTTTCTGAGTGTGTGGTCGGCCAATACCGGTGTGCTGACGGGGTGAC
CTGTATAGACGCCTGGAAACGGTGTGACGGAAACAGAGACTGCAGAGACG
GGAGTGACGAGGATGAAGACAAATGTTCGTGTCAAGATATCCCCACGTCC
TTGTCGATATGCAGACGCCTTGAGTACCAACGGATGGCACTCCCCAACCC
ACTGAACTACAACCACACCACGGTAGCCCAGGTTGAAAACTCTGACAAAT
TCAGCAACCTCAGCATCCTCGCAAATTCCGAGTGTCACCCCCGTGTCAGA
GACCTCGTCTGCGCCACCATCGTGCCGCGGTGCGAGACCAGTCCTGATCT
CAGGCAGCAGCTGCCCTGCCGGTCTTGGTGTGAAGAGGTGGACTACTCGT
GTTCGGAGGAGGGCGCTTGGTCAAGTTTTCCAAGCTGTGAAATTTTCCCT
TACACCAACTGCAACAACATCATACCTTCAAAGACTCCGGAGGGCGAGGA
GTGCTACGACGGAAACGGTGCAAATTACCGAGGGAACGAGGCCAGAAGTG
CTTTGTCCGGGGCAGACTGCGTCCAATGGGATGATGACCCAAGCACCATA
GCGGAGTATCCCTGGGCAAACCTCGTGGACAACAAATGCCGCGTGTTTTC
TGAGTGTGTGGTCGGCCAATACCGGTGTGCTGACGGGGTGACCTGTATAG
ACGCCTGGAAACGGTGTGACGGAAACAGAGACTGCAGAGACGGGAGTGAC
GAGGATGAAGACAAATGTTCGTGTCAAGATATCCCCACGTCCTTGTCGAT
ATGCAGACGCCTTGAGTACCAACGGATGGCACTCCCCAACCCACTGAACT
ACAACCACACCACGGTAGCCCAGGTTGAAAACTCTGACAAATTCAGCAAC
CTCAGCATCCTCGCAAATTCCGAGTGTCACCCCCGTGTCAGAGACCTCGT
CTGCGCCACCATCGTGCCGCGGTGCGAGACCAGTCCTGATCTCAGGCAGC
AGCTGCCCTGCCGGTCTTGGTGTGAAGAGGTGGACTACTCGTGTTCGGAG
GAGGGCGCTTGGTCAAGTTTTCCAAGCTGTGAAATTTTCCCTTACACCAA
CTGCAACAACATCATACCTTCAAAGACTCCGGAGGGCGAGGAGTGCTACG
ACGGAAACGGTGCAAATTACCGAGGGAACGAGGCCAGAAGTGCTTTGTCC
GGGGCAGACTGCGTCCAATGGGATGATGACCCAAGCACCATAGCGGAGTA
TCCCTGGGCAAACCTCGTGGACAACAAATGCCGCGTGTTTTCTGAGTGTG
TGGTCGGCCAATACCGGTGTGCTGACGGGGTGACCTGTATAGACGCCTGG
AAACGGTGTGACGGAAACAGAGACTGCAGAGACGGGAGTGACGAGGATGA
AGACAAATGTTCGTGTCAAGATATCCCCACGTCCTTGTCGATATGCAGAC
GCCTTGAGTACCAACGGATGGCACTCCCCAACCCACTGAACTACAACCAC
ACCACGGTAGCCCAGGTTGAAAACTCTGACAAATTCAGCAACCTCAGCAT
CCTCGCAAATTCCGAGTGTCACCCCCGTGTCAGAGACCTCGTCTGCGCCA
CCATCGTGCCGCGGTGCGAGACCAGTCCTGATCTCAGGCAGCAGCTGCCC
TGCCGGTCTTGGTGTGAAGAGGTGGACTACTCGTGTTCGGAGGAGGGCGC
TTGGTCAAGTTTTCCAAGCTGTGAAATTTTCCCTTACACCAACTGCAACA
ACATCATACCTTCAAAGACTCCGGAGGGCGAGGAGTGCTACGACGGAAAC
GGTGCAAATTACCGAGGGAACGAGGCCAGAAGTGCTTTGTCCGGGGCAGA
CTGCGTCCAATGGGATGATGACCCAAGCACCATAGCGGAGTATCCCTGGG
CAAACCTCGTGGACAACAAATGCCGCGTGTTTTCTGAGTGTGTGGTCGGC
CAATACCGGTGTGCTGACGGGGTGACCTGTATAGACGCCTGGAAACGGTG
TGACGGAAACAGAGACTGCAGAGACGGGAGTGACGAGGATGAAGACAAAT
GTTCGTGTCAAGATATCCCCACGTCCTTGTCGATATGCAGACGCCTTGAG
TACCAACGGATGGCACTCCCCAACCCACTGAACTACAACCACACCACGGT
AGCCCAGGTTGAAAACTCTGACAAATTCAGCAACCTCAGCATCCTCGCAA
ATTCCGAGTGTCACCCCCGTGTCAGAGACCTCGTCTGCGCCACCATCGTG
CCGCGGTGCGAGACCAGTCCTGATCTCAGGCAGCAGCTGCCCTGCCGGTC
TTGGTGTGAAGAGGTGGACTACTCGTGTTCGGAGGAGGGCGCTTGGTCAA
GTTTTCCAAGCTGTGAAATTTTCCCTTACACCAACTGCAACAACATCATA
CCTTCAAAGACTCCGGAGGGCGAGGAGTGCTACGACGGAAACGGTGCAAA
TTACCGAGGGAACGAGGCCAGAAGTGCTTTGTCCGGGGCAGACTGCGTCC
AATGGGATGATGACCCAAGCACCATAGCGGAGTATCCCTGGGCAAACCTC
GTGGACAACAAATGCCGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000015 | genome | Sc0000015:229829..237550 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97338_cuf4 |
| Biotype | protein_coding |
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