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transcript:BL97332_cuf7 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97332_cuf7
Unique Nametranscript:BL97332_cuf7
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97332_cuf7

>transcript:BL97332_cuf7-protein ID=transcript:BL97332_cuf7-protein|Name=transcript:BL97332_cuf7|organism=Branchiostoma lanceolatum|type=polypeptide|length=291bp
MTLAMAHWSCQRRCVANYSSTVVDGANFADESTEVVSIPYPQNLLMPHRP
EQYSWVAVGFTYIPDMDFYGHDQVRVYAHDQSGKRSDVLTFDFFVLENRC
MNGGLCTGPNHDPNCTDVQRSISFSGYECACPDGYFGRYCESDFNECSSD
PCPKNYTCVDLPNDFLCDCGSSDWPCASQSMPPWQIALITLMCLGVTIII
VAWGLRRKANKKKAYKIGPHHISGEDIELSNIRNERPSTFAELKRNPWIQ
PELPTEAPQAPHFPLKALKGTDANKTEESGSRRARQLPPLN
Run BLAST on NCBI

mRNA from alignment at Sc0000207:411657..413839+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97332_cuf7 ID=transcript:BL97332_cuf7|Name=transcript:BL97332_cuf7|organism=Branchiostoma lanceolatum|type=mRNA|length=2183bp|location=Sequence derived from alignment at Sc0000207:411657..413839+ (Branchiostoma lanceolatum)
CGTCAAAAACGTTCGCAGCAAGAGGAAGAATTCCTTCAAAAGGAAACATT CTTTATCGTTGCTCTCGTAGACACATCTTTCCAAAACAGTGCACCACGTC TCACCATTTCACCCAACCTGTGGACATATGAGGACCGCCCGATTGTTGCA TACCTGGAAGCGATAGATGACGACGATGATGACGTAACGTTCAGCGTAGA TAGGTCTACTGAGACGTCGCTCATTGGAGACGTTGAAATTGACCCGAGTG GGAAACTCCACTATAGGCCATGCAAAGATTGCTTTGGTCAGGACTACGTA ACCGTTGTAGTGAGTGAGAATAGGAACGATGGTGAAACGCCACTTGTCAC AAGAGAGACACTCTCCATTGAGGTCCTTCCCCTCGAAGACAACCCCGATA TCTTTGCAGTGAAGGATGGGTCGAAAGAAAACAGCACAGGTGATTCCATC ACGGTTGCACTGGAGGAGAACACAGCGCAAAGAGCGGACCAATCGAAGTA CGATGTCCTTGTCTTTGGAGCGGACGTAGACACGTATGATGTACCGTCCC TAGTATTCCATGACCCTAGCAATGGCACATTGGTCGTGTCAAAGACGGTG CGTAGCCAATTACAGTTCCACGGTAGTCGATGGCGCTAACTTTGCAGATG AGTCGACGGAGGTAGTGTCTATCCCCTATCCACAGAATCTCCTGATGCCT CACCGACCAGAGCAGTACTCCTGGGTAGCTGTTGGCTTCACCTACATTCC GGACATGGACTTCTATGGACATGATCAGGTTCGTGTGTACGCTCATGACC AGAGTGGCAAGAGGTCCGACGTACTGACCTTCGACTTCTTCGTCCTCGAA AACCGCTGTATGAATGGTGGGTTGTGTACCGGCCCCAACCACGATCCCAA CTGCACAGACGTACAGCGGAGCATCTCCTTCAGTGGGTACGAATGCGCAT GCCCAGACGGCTACTTCGGAAGGTACTGCGAGAGCGACTTTAACGAATGC TCCTCCGACCCCTGTCCGAAGAACTACACTTGTGTCGACCTTCCCAATGA CTTCCTCTGTGATTGTGGCTCATCAGACTGGCCATGCGCGTCGCAGTCCA TGCCACCATGGCAGATCGCACTTATTACACTCATGTGTCTTGGTGTCACC ATCATTATCGTTGCTTGGGGCCTGCGTAGGAAAGCCAATAAGAAGAAAGC CTACAAGATAGGGTAAGTAATACTTATGATTAAGCTATAAATGTCTTCAC TTAGAGAATCTTGGAGAAACTGTTAACTATTCTGCTAACTAATCTGGTAG CTAATCTGCATTTGTAAAGCACTCGCTTCCAATTACCTTTTGAAGGCATG ACTTGTTCATAAAGAGACTTGATTATCGTACCAAACAAACTAATCATGAA ATTGGTTTTATTTCATCTGAAGGCCACACCACATTTCTGGAGAAGACATC GAGCTTTCCAACATACGCAATGAACGTCCGAGCACTTTCGCAGAGCTGAA GCGGAACCCGTGGATTCAGCCTGAGCTCCCGACGGAGGCGCCACAAGCAC CACACTTTCCCCTGAAGGCTCTGAAAGGGACAGATGCCAACAAGGTTGGA ACCTTCCCAGATTTTCTTGGCGTAAGATTGCGGTTGATACTACGTAGGGG ATAAACTGTGTATGCATCTTAAAAAAAAAGAAGCAATTGCTTAAATGTAC TGATCATGCGTAACAATAGCGTTATCTTAAAGGCGTATTGTTAGTCGATT TCTAGAATCAAGAATACTTCAGTGTCGTTAATATACCATCCATTTGCAGA CCGTTTATACAGAATATATATCTTCCCACAGACCGAGGAGAGTGGCAGTC GCAGAGCCCGTCAGCTGCCTCCTTTGAACTGAAGACATCCACTCACCAAC CCGACCACGATGACATATAAACACTGACATGTGTAGCTTTGAGATTTCTG CTTTTATTTGATTCCTTTTTACACAAGGTCACTTGATCTGGTTTACTAGT TGAAATTGAGAGAAAATTCCTTCAACGAACATACACCATGTGAGTGAGTT AATTTTCCAACTGGTAGAGTTGATAGTATTGAAATGGCTAAAAAGATTTA AGTGAAATTGCTAATGTTCAAAATTGTCTGAATATGTAAGTAAGTACTGT TTGCATCATTTATGCAAGAAGCAAAGCAAGAAG

Coding sequence (CDS) from alignment at Sc0000207:411657..413839+

>transcript:BL97332_cuf7 ID=transcript:BL97332_cuf7|Name=transcript:BL97332_cuf7|organism=Branchiostoma lanceolatum|type=CDS|length=2628bp|location=Sequence derived from alignment at Sc0000207:411657..413839+ (Branchiostoma lanceolatum)
ATGACCCTAGCAATGGCACATTGGTCGTGTCAAAGACGGTGCGTAGCCAA
TTACAGTTCCACGGTAGTCGATGGCGCTAACTTTGCAGATGAGTCGACGG
AGGTAGTGTCTATCCCCTATCCACAGAATCTCCTGATGCCTCACCGACCA
GAGCAGTACTCCTGGGTAGCTGTTGGCTTCACCTACATTCCGGACATGGA
CTTCTATGGACATGATCAGGTTCGTGTGTACGCTCATGACCAGAGTGGCA
AGAGGTCCGACGTACTGACCTTCGACTTCTTCGTCCTCGAAAACCGCTGT
ATGAATGGTGGGTTGTGTACCGGCCCCAACCACGATCCCAACTGCACAGA
CGTACAGCGGAGCATCTCCTTCAGTGGGTACGAATGCGCATGCCCAGACG
GCTACTTCGGAAGGTACTGCGAGAGCGACTTTAACGAATGCTCCTCCGAC
CCCTGTCCGAAGAACTACACTTGTGTCGACCTTCCCAATGACTTCCTCTG
TGATTGTGGCTCATCAGACTGGCCATGCGCGTCGCAGTCCATGCCACCAT
GGCAGATCGCACTTATTACACTCATGTGTCTTGGTGTCACCATCATTATC
GTTGCTTGGGGCCTGCGTAGGAAAGCCAATAAGAAGAAAGCCTACAAGAT
AGGGCCACACCACATTTCTGGAGAAGACATCGAGCTTTCCAACATACGCA
ATGAACGTCCGAGCACTTTCGCAGAGCTGAAGCGGAACCCGTGGATTCAG
CCTGAGCTCCCGACGGAGGCGCCACAAGCACCACACTTTCCCCTGAAGGC
TCTGAAAGGGACAGATGCCAACAAGACCGAGGAGAGTGGCAGTCGCAGAG
CCCGTCAGCTGCCTCCTTTGAACTGAATGACCCTAGCAATGGCACATTGG
TCGTGTCAAAGACGGTGCGTAGCCAATTACAGTTCCACGGTAGTCGATGG
CGCTAACTTTGCAGATGAGTCGACGGAGGTAGTGTCTATCCCCTATCCAC
AGAATCTCCTGATGCCTCACCGACCAGAGCAGTACTCCTGGGTAGCTGTT
GGCTTCACCTACATTCCGGACATGGACTTCTATGGACATGATCAGGTTCG
TGTGTACGCTCATGACCAGAGTGGCAAGAGGTCCGACGTACTGACCTTCG
ACTTCTTCGTCCTCGAAAACCGCTGTATGAATGGTGGGTTGTGTACCGGC
CCCAACCACGATCCCAACTGCACAGACGTACAGCGGAGCATCTCCTTCAG
TGGGTACGAATGCGCATGCCCAGACGGCTACTTCGGAAGGTACTGCGAGA
GCGACTTTAACGAATGCTCCTCCGACCCCTGTCCGAAGAACTACACTTGT
GTCGACCTTCCCAATGACTTCCTCTGTGATTGTGGCTCATCAGACTGGCC
ATGCGCGTCGCAGTCCATGCCACCATGGCAGATCGCACTTATTACACTCA
TGTGTCTTGGTGTCACCATCATTATCGTTGCTTGGGGCCTGCGTAGGAAA
GCCAATAAGAAGAAAGCCTACAAGATAGGGCCACACCACATTTCTGGAGA
AGACATCGAGCTTTCCAACATACGCAATGAACGTCCGAGCACTTTCGCAG
AGCTGAAGCGGAACCCGTGGATTCAGCCTGAGCTCCCGACGGAGGCGCCA
CAAGCACCACACTTTCCCCTGAAGGCTCTGAAAGGGACAGATGCCAACAA
GACCGAGGAGAGTGGCAGTCGCAGAGCCCGTCAGCTGCCTCCTTTGAACT
GAATGACCCTAGCAATGGCACATTGGTCGTGTCAAAGACGGTGCGTAGCC
AATTACAGTTCCACGGTAGTCGATGGCGCTAACTTTGCAGATGAGTCGAC
GGAGGTAGTGTCTATCCCCTATCCACAGAATCTCCTGATGCCTCACCGAC
CAGAGCAGTACTCCTGGGTAGCTGTTGGCTTCACCTACATTCCGGACATG
GACTTCTATGGACATGATCAGGTTCGTGTGTACGCTCATGACCAGAGTGG
CAAGAGGTCCGACGTACTGACCTTCGACTTCTTCGTCCTCGAAAACCGCT
GTATGAATGGTGGGTTGTGTACCGGCCCCAACCACGATCCCAACTGCACA
GACGTACAGCGGAGCATCTCCTTCAGTGGGTACGAATGCGCATGCCCAGA
CGGCTACTTCGGAAGGTACTGCGAGAGCGACTTTAACGAATGCTCCTCCG
ACCCCTGTCCGAAGAACTACACTTGTGTCGACCTTCCCAATGACTTCCTC
TGTGATTGTGGCTCATCAGACTGGCCATGCGCGTCGCAGTCCATGCCACC
ATGGCAGATCGCACTTATTACACTCATGTGTCTTGGTGTCACCATCATTA
TCGTTGCTTGGGGCCTGCGTAGGAAAGCCAATAAGAAGAAAGCCTACAAG
ATAGGGCCACACCACATTTCTGGAGAAGACATCGAGCTTTCCAACATACG
CAATGAACGTCCGAGCACTTTCGCAGAGCTGAAGCGGAACCCGTGGATTC
AGCCTGAGCTCCCGACGGAGGCGCCACAAGCACCACACTTTCCCCTGAAG
GCTCTGAAAGGGACAGATGCCAACAAGACCGAGGAGAGTGGCAGTCGCAG
AGCCCGTCAGCTGCCTCCTTTGAACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97332gene:BL97332Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97332_cuf7transcript:BL97332_cuf7-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97332_cuf7-E1BL97332_cuf7-E1-1564476830-388580Branchiostoma lanceolatumexon
BL97332_cuf7-E2BL97332_cuf7-E2-1564476830-388582Branchiostoma lanceolatumexon
BL97332_cuf7-E3BL97332_cuf7-E3-1564476830-388585Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000207genomeSc0000207:411657..413839 +
Properties
Property NameValue
Transcript idBL97332_cuf7
Biotypeprotein_coding