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transcript:BL97330_cuf5 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97330_cuf5
Unique Nametranscript:BL97330_cuf5
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97330_cuf5

>transcript:BL97330_cuf5-protein ID=transcript:BL97330_cuf5-protein|Name=transcript:BL97330_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=203bp
GVYYVTVVALNLAGLEETVYTNGVTVLMAEPNTSSANISVPGAVPIAPGA
VSSEDQTSLSFMWTAVEDAGIDAYYFSVGSAQSKLDDIVPRTQVGVNGSG
YVFIHDGIVEFEGFNGDMSDMRERTIDDANKTFPNNFLMEPGRNLFVNMD
ACNAGHKCGGIQSPIVVIRRDGDAIGTSTNGEDLTLVCVGHPSDGANATV
VVE
Run BLAST on NCBI

mRNA from alignment at Sc0000207:409311..410567+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97330_cuf5 ID=transcript:BL97330_cuf5|Name=transcript:BL97330_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=1257bp|location=Sequence derived from alignment at Sc0000207:409311..410567+ (Branchiostoma lanceolatum)
AGGCGTCTACTACGTCACTGTTGTGGCTCTCAACTTAGCCGGACTTGAAG AGACTGTATACACTAATGGTGAATGTTAGATTGCATATTGTACAGATCAG TGTCTTCGCGTGTACTTTTTTTTGGGATTATATTTCTTAACTTAACTTAC TTAGGGGCTATCTAAAAGTCAAGCTGCTACGTATTTTTGTGGGTTTCTTT TCCTTGATGTGTTGTCATCTGCATAAAACAGAGACGTAGAAACAGGTATA TCGTAACGTCACAAATGTGTGCTTTTACAGGGGTAACTGTTTTGATGGCT GAACCTAACACTTCAAGTGCCAACATCTCCGTCCCCGGCGCCGTGCCGAT AGCTCCGGGTGCAGTGTCGTCCGAGGACCAGACCAGTCTCAGTTTCATGT GGACTGCAGTAGAGGACGCTGGCATAGACGCATACTGTGAGTTGATTCAC AAATAAAGAAATTACAACATTTGAAATAACGATTGATAAAATGGTATAGT AGTAAAGGACTGCCAGTTTTTGTATGTACGTTAAACAATCTGTTTCCCAC CATTAAAAATGTGATGATTGTAAATGATTTGTTATTATGTATTTTTTATT CAGGCCTCTGTTATTTCTAGCATCTTGTTTTATTTTCTTTACAGACTTCA GTGTCGGTAGTGCACAAAGCAAACTAGATGATATCGTTCCCCGCACTCAA GTTGGAGTTAACGGATCCGGATACGTTTTTATCCATGATGGCATCGTTGA ATTTGAGGGGTTCAACGGTGATATGTCCGACATGAGAGAGAGGACTATCG ACGATGCCAACAAAACGTTTCCTAACAACTTCCTGATGGAGCCTGGAAGG TATGGTATTTTTCAACTTCTCTAGTCTCGGTGTGGCAAAGACATGTGTGG TTAACATCATCGCTGCTTCCAATATTGACTTGTTGTAATGAGTGTCCTTT TTTTTCTCCTTCAGAAATCTATTTGTGAATATGGATGCATGTAATGCAGG CCATAAGTGTGGTGGAATTCAGTCACCGATCGTTGTGATACGCCGTAAGT ACATATATTGGGTTTACAAAATCTAGGCAATTGTTTTAACATAGCTTGGG AATCAGATCATATATCTGTACAGATAAAAACAAGCACATCTTTGTTGGTT TAAGGTGACGGTGATGCTATTGGAACATCAACAAATGGAGAGGACCTTAC CTTGGTATGCGTAGGACATCCTTCTGACGGAGCCAATGCTACAGTGGTCG TGGAAAC

Coding sequence (CDS) from alignment at Sc0000207:409311..410567+

>transcript:BL97330_cuf5 ID=transcript:BL97330_cuf5|Name=transcript:BL97330_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=3045bp|location=Sequence derived from alignment at Sc0000207:409311..410567+ (Branchiostoma lanceolatum)
GGCGTCTACTACGTCACTGTTGTGGCTCTCAACTTAGCCGGACTTGAAGA
GACTGTATACACTAATGGGGTAACTGTTTTGATGGCTGAACCTAACACTT
CAAGTGCCAACATCTCCGTCCCCGGCGCCGTGCCGATAGCTCCGGGTGCA
GTGTCGTCCGAGGACCAGACCAGTCTCAGTTTCATGTGGACTGCAGTAGA
GGACGCTGGCATAGACGCATACTACTTCAGTGTCGGTAGTGCACAAAGCA
AACTAGATGATATCGTTCCCCGCACTCAAGTTGGAGTTAACGGATCCGGA
TACGTTTTTATCCATGATGGCATCGTTGAATTTGAGGGGTTCAACGGTGA
TATGTCCGACATGAGAGAGAGGACTATCGACGATGCCAACAAAACGTTTC
CTAACAACTTCCTGATGGAGCCTGGAAGAAATCTATTTGTGAATATGGAT
GCATGTAATGCAGGCCATAAGTGTGGTGGAATTCAGTCACCGATCGTTGT
GATACGCCGTGACGGTGATGCTATTGGAACATCAACAAATGGAGAGGACC
TTACCTTGGTATGCGTAGGACATCCTTCTGACGGAGCCAATGCTACAGTG
GTCGTGGAAGGCGTCTACTACGTCACTGTTGTGGCTCTCAACTTAGCCGG
ACTTGAAGAGACTGTATACACTAATGGGGTAACTGTTTTGATGGCTGAAC
CTAACACTTCAAGTGCCAACATCTCCGTCCCCGGCGCCGTGCCGATAGCT
CCGGGTGCAGTGTCGTCCGAGGACCAGACCAGTCTCAGTTTCATGTGGAC
TGCAGTAGAGGACGCTGGCATAGACGCATACTACTTCAGTGTCGGTAGTG
CACAAAGCAAACTAGATGATATCGTTCCCCGCACTCAAGTTGGAGTTAAC
GGATCCGGATACGTTTTTATCCATGATGGCATCGTTGAATTTGAGGGGTT
CAACGGTGATATGTCCGACATGAGAGAGAGGACTATCGACGATGCCAACA
AAACGTTTCCTAACAACTTCCTGATGGAGCCTGGAAGAAATCTATTTGTG
AATATGGATGCATGTAATGCAGGCCATAAGTGTGGTGGAATTCAGTCACC
GATCGTTGTGATACGCCGTGACGGTGATGCTATTGGAACATCAACAAATG
GAGAGGACCTTACCTTGGTATGCGTAGGACATCCTTCTGACGGAGCCAAT
GCTACAGTGGTCGTGGAAGGCGTCTACTACGTCACTGTTGTGGCTCTCAA
CTTAGCCGGACTTGAAGAGACTGTATACACTAATGGGGTAACTGTTTTGA
TGGCTGAACCTAACACTTCAAGTGCCAACATCTCCGTCCCCGGCGCCGTG
CCGATAGCTCCGGGTGCAGTGTCGTCCGAGGACCAGACCAGTCTCAGTTT
CATGTGGACTGCAGTAGAGGACGCTGGCATAGACGCATACTACTTCAGTG
TCGGTAGTGCACAAAGCAAACTAGATGATATCGTTCCCCGCACTCAAGTT
GGAGTTAACGGATCCGGATACGTTTTTATCCATGATGGCATCGTTGAATT
TGAGGGGTTCAACGGTGATATGTCCGACATGAGAGAGAGGACTATCGACG
ATGCCAACAAAACGTTTCCTAACAACTTCCTGATGGAGCCTGGAAGAAAT
CTATTTGTGAATATGGATGCATGTAATGCAGGCCATAAGTGTGGTGGAAT
TCAGTCACCGATCGTTGTGATACGCCGTGACGGTGATGCTATTGGAACAT
CAACAAATGGAGAGGACCTTACCTTGGTATGCGTAGGACATCCTTCTGAC
GGAGCCAATGCTACAGTGGTCGTGGAAGGCGTCTACTACGTCACTGTTGT
GGCTCTCAACTTAGCCGGACTTGAAGAGACTGTATACACTAATGGGGTAA
CTGTTTTGATGGCTGAACCTAACACTTCAAGTGCCAACATCTCCGTCCCC
GGCGCCGTGCCGATAGCTCCGGGTGCAGTGTCGTCCGAGGACCAGACCAG
TCTCAGTTTCATGTGGACTGCAGTAGAGGACGCTGGCATAGACGCATACT
ACTTCAGTGTCGGTAGTGCACAAAGCAAACTAGATGATATCGTTCCCCGC
ACTCAAGTTGGAGTTAACGGATCCGGATACGTTTTTATCCATGATGGCAT
CGTTGAATTTGAGGGGTTCAACGGTGATATGTCCGACATGAGAGAGAGGA
CTATCGACGATGCCAACAAAACGTTTCCTAACAACTTCCTGATGGAGCCT
GGAAGAAATCTATTTGTGAATATGGATGCATGTAATGCAGGCCATAAGTG
TGGTGGAATTCAGTCACCGATCGTTGTGATACGCCGTGACGGTGATGCTA
TTGGAACATCAACAAATGGAGAGGACCTTACCTTGGTATGCGTAGGACAT
CCTTCTGACGGAGCCAATGCTACAGTGGTCGTGGAAGGCGTCTACTACGT
CACTGTTGTGGCTCTCAACTTAGCCGGACTTGAAGAGACTGTATACACTA
ATGGGGTAACTGTTTTGATGGCTGAACCTAACACTTCAAGTGCCAACATC
TCCGTCCCCGGCGCCGTGCCGATAGCTCCGGGTGCAGTGTCGTCCGAGGA
CCAGACCAGTCTCAGTTTCATGTGGACTGCAGTAGAGGACGCTGGCATAG
ACGCATACTACTTCAGTGTCGGTAGTGCACAAAGCAAACTAGATGATATC
GTTCCCCGCACTCAAGTTGGAGTTAACGGATCCGGATACGTTTTTATCCA
TGATGGCATCGTTGAATTTGAGGGGTTCAACGGTGATATGTCCGACATGA
GAGAGAGGACTATCGACGATGCCAACAAAACGTTTCCTAACAACTTCCTG
ATGGAGCCTGGAAGAAATCTATTTGTGAATATGGATGCATGTAATGCAGG
CCATAAGTGTGGTGGAATTCAGTCACCGATCGTTGTGATACGCCGTGACG
GTGATGCTATTGGAACATCAACAAATGGAGAGGACCTTACCTTGGTATGC
GTAGGACATCCTTCTGACGGAGCCAATGCTACAGTGGTCGTGGAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97330gene:BL97330Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97330_cuf5transcript:BL97330_cuf5-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97330_cuf5-E1BL97330_cuf5-E1-1564476830-388565Branchiostoma lanceolatumexon
BL97330_cuf5-E2BL97330_cuf5-E2-1564476830-388567Branchiostoma lanceolatumexon
BL97330_cuf5-E3BL97330_cuf5-E3-1564476830-388569Branchiostoma lanceolatumexon
BL97330_cuf5-E4BL97330_cuf5-E4-1564476830-388571Branchiostoma lanceolatumexon
BL97330_cuf5-E5BL97330_cuf5-E5-1564476830-388574Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000207genomeSc0000207:409311..410567 +
Properties
Property NameValue
Transcript idBL97330_cuf5
Biotypeprotein_coding