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transcript:BL97321_cuf5 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97321_cuf5
Unique Nametranscript:BL97321_cuf5
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97321_cuf5

>transcript:BL97321_cuf5-protein ID=transcript:BL97321_cuf5-protein|Name=transcript:BL97321_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=137bp
SLLNSNRYRSVVKLCHPSGCFQPAHSDGFTVLHNPPTPGLITSIGFNSTS
NVLTFIWQRFGQVDTAQSTFEDPSIHYEWNLATEMSSMGSAYGDIILPWQ
TIQINMVIEGQLTHEVTLDAGLDFTHCLRLLIRGYNK
Run BLAST on NCBI

mRNA from alignment at Sc0000207:322127..323111-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97321_cuf5 ID=transcript:BL97321_cuf5|Name=transcript:BL97321_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=985bp|location=Sequence derived from alignment at Sc0000207:322127..323111- (Branchiostoma lanceolatum)
TCCCTTCTCAACTCGAATCGGTACCGGTCTGTGGTCAAGCTGTGCCACCC ATCAGGATGTTTTCAGGTACCCCTCTCATAAAACATGCTAGTTTACTTTA TCAATTCCAGAAGCTACTGCAAAGCCGTCACGAAACAGCTCATTTCATTA AGCTTATACAGTAAAACGTTTGTTTCAAGTTTCATTGGGATTTTTCGCAG CCCGCACACAGTGATGGGTTCACTGTCCTCCACAACCCTCCCACTCCTGG ACTGATCACCTCCATCGGGTTCAACAGCACGTCAAACGTGTTAACATTCA TCTGGCAGCGGTTTGGTCAAGTGGACACAGCCCAGTCAACGTTTGAGGAT CCATCCATACACTATGAGTGGAACTTGGCGACAGAGATGTCTTCAATGGG TTCGGCCTATGGTGACATCATATTACCCTGGCAGACGATCCAGATAAACA TGGTGATTGAAGGCCAAGTAGGTTGTAGGTAGAGTTCGTACAAGTAGTTT TCCAAGCAGACGTATATACGGGGGCTGACTGAAAATTCTTTGGCTATCAT TACGATTTTGTCCCCGTATAGATCTGCTTGGAGATTACTCTTAATTAAGT TGGTTACAGTGGTTCCCATAACACTGTTCATAGAAGCTACCCAAGACAGA CACATTGCGATTTGCTCTGTAGTCGGTCATTCCTGTATCTTTACCAATTG TTGGTGTATATGGTATGATATATGGTGTTGCCATACTTTGTACCTGCTAT ACTGGTCGCGCAATAAAGTTCTTCTATGATATGACATGACGTAAAGCACA TTAAGTTAATTCTCAATTCTATATATGTGACCAACATTTGTTTCTAGAAT GCCTAGAGTATACAGAACTCGTCTTCAACTGATGTTTATTCTGCCCATAC TTTCCAGCTCACCCATGAGGTAACATTGGATGCTGGCTTAGACTTCACCC ATTGCCTCCGCCTGCTCATCCGGGGGTACAACAAG

Coding sequence (CDS) from alignment at Sc0000207:322127..323111-

>transcript:BL97321_cuf5 ID=transcript:BL97321_cuf5|Name=transcript:BL97321_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=1233bp|location=Sequence derived from alignment at Sc0000207:322127..323111- (Branchiostoma lanceolatum)
TCCCTTCTCAACTCGAATCGGTACCGGTCTGTGGTCAAGCTGTGCCACCC
ATCAGGATGTTTTCAGCCCGCACACAGTGATGGGTTCACTGTCCTCCACA
ACCCTCCCACTCCTGGACTGATCACCTCCATCGGGTTCAACAGCACGTCA
AACGTGTTAACATTCATCTGGCAGCGGTTTGGTCAAGTGGACACAGCCCA
GTCAACGTTTGAGGATCCATCCATACACTATGAGTGGAACTTGGCGACAG
AGATGTCTTCAATGGGTTCGGCCTATGGTGACATCATATTACCCTGGCAG
ACGATCCAGATAAACATGGTGATTGAAGGCCAACTCACCCATGAGGTAAC
ATTGGATGCTGGCTTAGACTTCACCCATTGCCTCCGCCTGCTCATCCGGG
GGTACAACAAGTCCCTTCTCAACTCGAATCGGTACCGGTCTGTGGTCAAG
CTGTGCCACCCATCAGGATGTTTTCAGCCCGCACACAGTGATGGGTTCAC
TGTCCTCCACAACCCTCCCACTCCTGGACTGATCACCTCCATCGGGTTCA
ACAGCACGTCAAACGTGTTAACATTCATCTGGCAGCGGTTTGGTCAAGTG
GACACAGCCCAGTCAACGTTTGAGGATCCATCCATACACTATGAGTGGAA
CTTGGCGACAGAGATGTCTTCAATGGGTTCGGCCTATGGTGACATCATAT
TACCCTGGCAGACGATCCAGATAAACATGGTGATTGAAGGCCAACTCACC
CATGAGGTAACATTGGATGCTGGCTTAGACTTCACCCATTGCCTCCGCCT
GCTCATCCGGGGGTACAACAAGTCCCTTCTCAACTCGAATCGGTACCGGT
CTGTGGTCAAGCTGTGCCACCCATCAGGATGTTTTCAGCCCGCACACAGT
GATGGGTTCACTGTCCTCCACAACCCTCCCACTCCTGGACTGATCACCTC
CATCGGGTTCAACAGCACGTCAAACGTGTTAACATTCATCTGGCAGCGGT
TTGGTCAAGTGGACACAGCCCAGTCAACGTTTGAGGATCCATCCATACAC
TATGAGTGGAACTTGGCGACAGAGATGTCTTCAATGGGTTCGGCCTATGG
TGACATCATATTACCCTGGCAGACGATCCAGATAAACATGGTGATTGAAG
GCCAACTCACCCATGAGGTAACATTGGATGCTGGCTTAGACTTCACCCAT
TGCCTCCGCCTGCTCATCCGGGGGTACAACAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97321gene:BL97321Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97321_cuf5-E1BL97321_cuf5-E1-1564476830-388381Branchiostoma lanceolatumexon
BL97321_cuf5-E2BL97321_cuf5-E2-1564476830-388379Branchiostoma lanceolatumexon
BL97321_cuf5-E3BL97321_cuf5-E3-1564476830-388377Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97321_cuf5transcript:BL97321_cuf5-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000207genomeSc0000207:322127..323111 -
Properties
Property NameValue
Transcript idBL97321_cuf5
Biotypeprotein_coding