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transcript:BL97320_cuf4 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97320_cuf4
Unique Nametranscript:BL97320_cuf4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97320_cuf4

>transcript:BL97320_cuf4-protein ID=transcript:BL97320_cuf4-protein|Name=transcript:BL97320_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=181bp
PQVLACGETEENFVNVPDIELFHGRRYHICVHANATVLHFELFDQPLEEV
DSCSNGITVDLTPPLPGQVWVNHRDIQFQTSTSEIKVYWEAFRDVEEHGM
SSHHSGIHKYEVAIGTSPNGVDVRDFVDVGVTNMATVHGLRLYSGHTYYA
TIRATDYVGLTVTSVSQGVTVDVTAPVVTDA
Run BLAST on NCBI

mRNA from alignment at Sc0000207:317595..321280-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97320_cuf4 ID=transcript:BL97320_cuf4|Name=transcript:BL97320_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=3686bp|location=Sequence derived from alignment at Sc0000207:317595..321280- (Branchiostoma lanceolatum)
CCGCAGGTTTTGGCTTGTGGAGAAACTGAGGTAGGGTTTTACTTCGTGAT TATTGTAATGCAGAAGGTCGATAAAGAAAGCAGAAAATGGCCATACAACA CAGTATATATCACTAACTACTACCATATTCTTTCCCCTGCCGCCAATCGC ACTGTTTCGTAAAAATAGACCTGTTGCCAATTACGGTGGTGGACCGTGCT CCAAAACGAGGCTGCAGTTGATACTCCCTACTTATAAGCCTGTATTATAC TATAGGTATGCCATCTTCGGTCGCATGTTTGGCCCCTCTAAAGTGAAATA CTGAGGTACATTTTCATATAACTTATAAAGAATATTTTTGTGGACATTCG GTCTTGACATTGGCCATGTCTTTATTCTTTTTAAACATTTCCTGACGGGT GCCTTGACAACATTTAGCGTTAGTGTTTAGCCTCCCATTTGTACTTTAGA TATTAGAACATCTATGAAAATGATGCCTAGACAATAGGGTCAGTTTATAA AATGCTTGTTTTACATGTTGTTTTATAATGCGTGCTTTATTGCTTACATA TATCATCCACTGTCATATCCCAGGAAAACTTTGTCAACGTCCCAGACATA GAGCTGTTCCACGGACGGAGATACCACATCTGTGTCCACGCGAACGCGAC AGTTCTGCATTTCGAGCTGTTCGACCAGCCGCTGGAGGAGGTAGATTCCT GCTCCAACGGCATCACCGTGGATCTTACCCCTCCACTTCCCGGTCAAGTA TGGGTCAACCACAGAGACATTCAGTTCCAGGTAATATATAGTGTGTCAAT TATAACGTAGAGTTGATTCACTCCTAAAGCTAACCGACATCTTTAACAAC TGAAGCTAACCGACATCTTTCACACTGAGGAACGACTGTGGTGTGGAAGC TGTCGGTTAGCTCGAGGAAAAAATCCACTCTTTACCTTCGCCGAGAAGGT TATGCAGAGGGTAGCGTTTGTATGTGTGTGTGTAATGTACAGCATAACTC GAGAAGGCTTGGATGGATTGTCTTGATATTTGGTAGGTGGGTAGGTCTTG ATGAGACTAGGAAATGATTAGATTTTGGGTCCCCTAGCGGCTTGTTACGG TACTGCAGCGGAACTTCCTGTTTTGATATCTCATGTTCTGGACATGCTAT GGAACTGATTTTTAAGTGGTAGATAGCTCTTTGGACAGAGAGTAAGTAGT ATGGGTTTGGGCCCCCTAGCGGCTTTTTTGGAACTGCAGGAGCAGGTTTT GCATCTGACTTTGAAAGGGAATAACTCAAGAAGGGCTTGATGGATGGCAA TGATTTTTGGTAAGTAGATAGCTTGAGTGATGATGAACATGATTAGATAC TTTTTATGCAAATCAGTATCTAATTTGCATAATTAATGAGGAAAGTTTAT ACATCCGCCAAATTCCATGATAGGACTCTGAAACATGTGACATATGTAAG TGAGGAAGAGAGAAATATTAATTGATATGAACTATGCAAATGAAGACCTC ATTTGCATAATTAATGAGAAAATACTATAACTCAAGATGGCCTTGATGGA TGGTCATGATATTTGGTATGTAGATAGCTTGTGTGATGCTTAGAATGATT GGCCGATGATTATGCAAATCAGATTCTAATTTGCATAATTAATGAGGCAA CTTTAAAAATCTGCTTTGTGCCATGATATGACTATTCAAATTGTAACTGA GGAAGAGAGGAATGTTGAAGATAGAAAATATGCAAATGTGGGCCTAATTT GCATACTTAAATGAGAAACTACTATAATTCCATACTGGTAAATGACGGAA ATTTCATGCATTTAATACTTTTTTTGCGCATCGGGAAGTTATGTGAATGT GAACATCGTTGAATCAAATTTTGCTTATAAGGGCCTCATTTGCATAATTG ATGATCAAAATTAGCATAAACTTCTTTGTTAAGCTCATACTTTGTTAAGC TCATACTTTGGACATGTCATATTTTAAGACAATCAACTGGTATGATTTAT AATTGATGAGAAACACTCCTAATACGTCAGTCACAATGGTTAAAATTATT TGGCGAAGGTATGAGGTCGTGGAACTCTAGTTTATACTATATAGTGTGTC AATTGTTTAATTTGCGTTATCAAGGTAAGACCACCAAGATTATATTGTGT TGTTGATTGTAGCATGTAAGAAAAGGAATTTGATGATGATACTGACGTCA AATCGAAGTATTCTTAGGTCCGCATGTTAGATTCAACCAACAGATTTCCA CGTACCCTCTACGGTCTCTAGTACAAAAATGACAAAACATATATCGTTTA GTCTTTTTTTATGACAAAATCGTCTTTTGTTTCCCTGTCAGACTTCAACC TCAGAGATAAAAGTCTACTGGGAAGCGTTTCGTGACGTTGAGGAGCACGG CATGTCGTCTCATCATAGCGGTATTCACAAGTATGAAGTTGCCATTGGTA CGTACTCTTTATATAACAGCTTAAGATACCACCTTCATACTCAACTCAAA ACTTTTATACCATACCATTGACTTTGACATTATTTGAATCCACAATTCAA GCCTTAATCATAACTTAATTTAAGGGTTTGACACTATTAAGGCCGAACTT CCTGTACCCGTATTTGTTCTAAAAGAAGACAAATTGATATTTTTTCTTTG CAGGTACCAGTCCAAATGGTGTCGACGTTCGGGACTTCGTGGATGTTGGC GTTACGAACATGGCAACGGTTCATGGCCTCCGGTTGTATTCAGGACACAC CTACTATGCAACTATTAGAGGTAAGGGATTGGTGTACCGTTTTCAATTGG CATTGGCGTAATGAGTATATGAAAAAAAACAATTTCCAATTTGGAGGAAA TCAATGAAATTTGTTGTCTGGGTTGGATAATTTCAATGTTGTCGCAGTCT TTCCCGTGCTCCTGAAGATTTTATAGTTCAATAGTGCCTTAGATGCAAGT ATTGCTGCTGACCGCGTGACTAAATCTGAACTTTGTATTGTCTTGATAAA TCAATTGTTGAAATCAATCTGTATCATTGCCGTAGCGACTGACTATGTCG GCCTGACCGTGACGAGCGTGTCCCAGGGAGTAACAGTTGACGTCACGGCA CCTGTTGTGACTGATGCNTGACATCACGCCACCTGTGGTGACTGACGCTG ATATAGATGTAGGAGGCCGATATCTTCTGTCTACGTCATCCGTGTCTGCA AGCTGGGACAGGGTCTTCATGGATCCTGAGAGCGGTAGGTTTGGACAAGA AAACATTGAGTCAGAGATATGCCAAACTCGTGCGTGTTGTTTAGATAAAT TCTGTTTTACCTCCGTCAACAAGGTCATGTTTTGGTAACGTTTGTGACAG TGTCTGTGGTTGAACTGCATAAAACTCATCAGCTGTGGATGGATCATTAC ACGATTTGGTATTTGGCTATGTCTTCGCCTCACGTAAGAAATCATAAATT TTGGGCTCGTACACCTAGCGGCTTTCCTTAGTACTGCAGCATACCTATCG GTTATTTTATATTTTATTCTGGACATGGTGTATGATTACGATGTCATCAC CAATCTTTGCCCACAAAGCATATTTCGTATCCGTAGGGTGGGTGGATATA ACTGTAATATTTGACTCCAAAGGCATCTCGTACTATGAGTGGTGTGTGGG ATCCCAGCCCGCCCATTGTGACGTCATGGCGCTCAC

Coding sequence (CDS) from alignment at Sc0000207:317595..321280-

>transcript:BL97320_cuf4 ID=transcript:BL97320_cuf4|Name=transcript:BL97320_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=2730bp|location=Sequence derived from alignment at Sc0000207:317595..321280- (Branchiostoma lanceolatum)
CCGCAGGTTTTGGCTTGTGGAGAAACTGAGGAAAACTTTGTCAACGTCCC
AGACATAGAGCTGTTCCACGGACGGAGATACCACATCTGTGTCCACGCGA
ACGCGACAGTTCTGCATTTCGAGCTGTTCGACCAGCCGCTGGAGGAGGTA
GATTCCTGCTCCAACGGCATCACCGTGGATCTTACCCCTCCACTTCCCGG
TCAAGTATGGGTCAACCACAGAGACATTCAGTTCCAGACTTCAACCTCAG
AGATAAAAGTCTACTGGGAAGCGTTTCGTGACGTTGAGGAGCACGGCATG
TCGTCTCATCATAGCGGTATTCACAAGTATGAAGTTGCCATTGGTACCAG
TCCAAATGGTGTCGACGTTCGGGACTTCGTGGATGTTGGCGTTACGAACA
TGGCAACGGTTCATGGCCTCCGGTTGTATTCAGGACACACCTACTATGCA
ACTATTAGAGCGACTGACTATGTCGGCCTGACCGTGACGAGCGTGTCCCA
GGGAGTAACAGTTGACGTCACGGCACCTGTTGTGACTGATGCNTGACCGC
AGGTTTTGGCTTGTGGAGAAACTGAGGAAAACTTTGTCAACGTCCCAGAC
ATAGAGCTGTTCCACGGACGGAGATACCACATCTGTGTCCACGCGAACGC
GACAGTTCTGCATTTCGAGCTGTTCGACCAGCCGCTGGAGGAGGTAGATT
CCTGCTCCAACGGCATCACCGTGGATCTTACCCCTCCACTTCCCGGTCAA
GTATGGGTCAACCACAGAGACATTCAGTTCCAGACTTCAACCTCAGAGAT
AAAAGTCTACTGGGAAGCGTTTCGTGACGTTGAGGAGCACGGCATGTCGT
CTCATCATAGCGGTATTCACAAGTATGAAGTTGCCATTGGTACCAGTCCA
AATGGTGTCGACGTTCGGGACTTCGTGGATGTTGGCGTTACGAACATGGC
AACGGTTCATGGCCTCCGGTTGTATTCAGGACACACCTACTATGCAACTA
TTAGAGCGACTGACTATGTCGGCCTGACCGTGACGAGCGTGTCCCAGGGA
GTAACAGTTGACGTCACGGCACCTGTTGTGACTGATGCNTGACCGCAGGT
TTTGGCTTGTGGAGAAACTGAGGAAAACTTTGTCAACGTCCCAGACATAG
AGCTGTTCCACGGACGGAGATACCACATCTGTGTCCACGCGAACGCGACA
GTTCTGCATTTCGAGCTGTTCGACCAGCCGCTGGAGGAGGTAGATTCCTG
CTCCAACGGCATCACCGTGGATCTTACCCCTCCACTTCCCGGTCAAGTAT
GGGTCAACCACAGAGACATTCAGTTCCAGACTTCAACCTCAGAGATAAAA
GTCTACTGGGAAGCGTTTCGTGACGTTGAGGAGCACGGCATGTCGTCTCA
TCATAGCGGTATTCACAAGTATGAAGTTGCCATTGGTACCAGTCCAAATG
GTGTCGACGTTCGGGACTTCGTGGATGTTGGCGTTACGAACATGGCAACG
GTTCATGGCCTCCGGTTGTATTCAGGACACACCTACTATGCAACTATTAG
AGCGACTGACTATGTCGGCCTGACCGTGACGAGCGTGTCCCAGGGAGTAA
CAGTTGACGTCACGGCACCTGTTGTGACTGATGCNTGACCGCAGGTTTTG
GCTTGTGGAGAAACTGAGGAAAACTTTGTCAACGTCCCAGACATAGAGCT
GTTCCACGGACGGAGATACCACATCTGTGTCCACGCGAACGCGACAGTTC
TGCATTTCGAGCTGTTCGACCAGCCGCTGGAGGAGGTAGATTCCTGCTCC
AACGGCATCACCGTGGATCTTACCCCTCCACTTCCCGGTCAAGTATGGGT
CAACCACAGAGACATTCAGTTCCAGACTTCAACCTCAGAGATAAAAGTCT
ACTGGGAAGCGTTTCGTGACGTTGAGGAGCACGGCATGTCGTCTCATCAT
AGCGGTATTCACAAGTATGAAGTTGCCATTGGTACCAGTCCAAATGGTGT
CGACGTTCGGGACTTCGTGGATGTTGGCGTTACGAACATGGCAACGGTTC
ATGGCCTCCGGTTGTATTCAGGACACACCTACTATGCAACTATTAGAGCG
ACTGACTATGTCGGCCTGACCGTGACGAGCGTGTCCCAGGGAGTAACAGT
TGACGTCACGGCACCTGTTGTGACTGATGCNTGACCGCAGGTTTTGGCTT
GTGGAGAAACTGAGGAAAACTTTGTCAACGTCCCAGACATAGAGCTGTTC
CACGGACGGAGATACCACATCTGTGTCCACGCGAACGCGACAGTTCTGCA
TTTCGAGCTGTTCGACCAGCCGCTGGAGGAGGTAGATTCCTGCTCCAACG
GCATCACCGTGGATCTTACCCCTCCACTTCCCGGTCAAGTATGGGTCAAC
CACAGAGACATTCAGTTCCAGACTTCAACCTCAGAGATAAAAGTCTACTG
GGAAGCGTTTCGTGACGTTGAGGAGCACGGCATGTCGTCTCATCATAGCG
GTATTCACAAGTATGAAGTTGCCATTGGTACCAGTCCAAATGGTGTCGAC
GTTCGGGACTTCGTGGATGTTGGCGTTACGAACATGGCAACGGTTCATGG
CCTCCGGTTGTATTCAGGACACACCTACTATGCAACTATTAGAGCGACTG
ACTATGTCGGCCTGACCGTGACGAGCGTGTCCCAGGGAGTAACAGTTGAC
GTCACGGCACCTGTTGTGACTGATGCNTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97320gene:BL97320Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97320_cuf4transcript:BL97320_cuf4-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97320_cuf4-E1BL97320_cuf4-E1-1564476830-388372Branchiostoma lanceolatumexon
BL97320_cuf4-E2BL97320_cuf4-E2-1564476830-388370Branchiostoma lanceolatumexon
BL97320_cuf4-E3BL97320_cuf4-E3-1564476830-388368Branchiostoma lanceolatumexon
BL97320_cuf4-E4BL97320_cuf4-E4-1564476830-388366Branchiostoma lanceolatumexon
BL97320_cuf4-E5BL97320_cuf4-E5-1564476830-388364Branchiostoma lanceolatumexon
BL97320_cuf4-E6BL97320_cuf4-E6-1564476830-388361Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000207genomeSc0000207:317595..321280 -
Properties
Property NameValue
Transcript idBL97320_cuf4
Biotypeprotein_coding