Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

transcript:BL97319_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97319_cuf3
Unique Nametranscript:BL97319_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97319_cuf3

>transcript:BL97319_cuf3-protein ID=transcript:BL97319_cuf3-protein|Name=transcript:BL97319_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=112bp
ISVMGYNGAGLSSTATSWAAVVETSPPVAGFVYDGVSGADRHDVDVQMDI
ETLHTWWEGFHDPHTALMSYSWSIGTCPGCDDVMEAEDVGLLQEASVEHL
SLVSGKRYYVTV
Run BLAST on NCBI

mRNA from alignment at Sc0000207:316078..317522-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97319_cuf3 ID=transcript:BL97319_cuf3|Name=transcript:BL97319_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=1445bp|location=Sequence derived from alignment at Sc0000207:316078..317522- (Branchiostoma lanceolatum)
CATATCTGTTATGGTAGGTCACGGTGAAAGGAGACCAAGATGTCGTTTAT CGTAAAGCATTGTACAAATTGGATCAATTGTAAAAAAGATTGTATATCCT TTTCAGGATATTTTTTGGGGAGAATGGTTTCATGACAAAAACTGCAGATT TATATTTTCTTTAATCATCGTTTAAAGAGGCAGATTCTTTGACATTGACA ATGATTCTTGACCATCAAAGGGGCTATCATTGAACGGAAAAAAGACGACA GATAGATGTACTCCATCATAAACTGAGTTAACCCTGACTGTTTACGTGTA GGGTTACAATGGAGCCGGTCTGTCGTCCACCGCCACCTCCTGGGCAGCTG TGGTGGAGACGTCTCCTCCCGTGGCCGGGTTCGTGTACGACGGTGTCTCT GGTGCGGACAGACATGATGTGGACGTCCAGGTGATATATATACTGTGCTT CTCTTGGCCTTGATATTACAAAAAATTGACAGAATCTACGAACGTAGAAT CTGTGCTCAGGGGGAAACTTAAAGGCAAACGGCATCTAAGTATATTATAA TCTGTGACAGGGAGTTAAAAACCGCCGCTGCTGAAGAGAAGGTTACGATA TACACAGCTTCTGCTCTTTGATGTATCAACATGTTATCTACTATTTTTAG ACAACGAAAAAATTACAGCCAACCACGGTTGTTTATTTGTTTCCCTAGTT GTTTCAAGAGAACGGAATGCTTGTTGAGTAAGAGATTTTGATAACAAGAA ATAAACATTAAGCGATGGATTGAAATCTGGCAGCCTGAGGATAATTTCAA CATTAGAAGTCAGTAAAGACCAGTAATCATCTAATTACGTTACAGATGGA CATAGAAACCCTGCATACCTGGTGGGAAGGTTTCCACGACCCCCACACGG CTCTCATGAGTTACTCGTGGAGCATCGGCACCTGTCCCGGATGTGATGAC GTCATGGAGGCTGAAGATGTCGGTTTACTTCAAGGTAGGTCGTCGCAACT CTTGTTTGTACTAGCCATGTTGGTCACCATGTCTATATTAGTCTAGGCGA TTGGTGCAAATTTTTTTCAAATTCTGGTAAAAGCATGAAACTTCGCATAA ATGTTCTATGCAATAATACAAAAAATTCTAGGGGCGGATCCAGTAGAAAC CTGCTGTTACATGGCAACTGTTGCTAGGCAACGTTTTTTTGCTTGGCAAC GAGTACTCTGGAAAGCCAGTGCCTGCATTTTTACGTATGTAACGTTACAT ACTTAGCATGGTCCAATGCTGTAGATGATGTGTAAAACATAACCTTTCCG GTAGAACCATAAAGCCGACACAAGGTCAGTAAGGATTGGTTTACGACTTG GTCAAAGCATGAATCTTACTACGACATCTTCTCCACAGAAGCCTCTGTCG AACACTTGAGCCTCGTTTCTGGGAAACGGTACTACGTCACGGTGG

Coding sequence (CDS) from alignment at Sc0000207:316078..317522-

>transcript:BL97319_cuf3 ID=transcript:BL97319_cuf3|Name=transcript:BL97319_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1344bp|location=Sequence derived from alignment at Sc0000207:316078..317522- (Branchiostoma lanceolatum)
ATATCTGTTATGGGTTACAATGGAGCCGGTCTGTCGTCCACCGCCACCTC
CTGGGCAGCTGTGGTGGAGACGTCTCCTCCCGTGGCCGGGTTCGTGTACG
ACGGTGTCTCTGGTGCGGACAGACATGATGTGGACGTCCAGATGGACATA
GAAACCCTGCATACCTGGTGGGAAGGTTTCCACGACCCCCACACGGCTCT
CATGAGTTACTCGTGGAGCATCGGCACCTGTCCCGGATGTGATGACGTCA
TGGAGGCTGAAGATGTCGGTTTACTTCAAGAAGCCTCTGTCGAACACTTG
AGCCTCGTTTCTGGGAAACGGTACTACGTCACGGTGATATCTGTTATGGG
TTACAATGGAGCCGGTCTGTCGTCCACCGCCACCTCCTGGGCAGCTGTGG
TGGAGACGTCTCCTCCCGTGGCCGGGTTCGTGTACGACGGTGTCTCTGGT
GCGGACAGACATGATGTGGACGTCCAGATGGACATAGAAACCCTGCATAC
CTGGTGGGAAGGTTTCCACGACCCCCACACGGCTCTCATGAGTTACTCGT
GGAGCATCGGCACCTGTCCCGGATGTGATGACGTCATGGAGGCTGAAGAT
GTCGGTTTACTTCAAGAAGCCTCTGTCGAACACTTGAGCCTCGTTTCTGG
GAAACGGTACTACGTCACGGTGATATCTGTTATGGGTTACAATGGAGCCG
GTCTGTCGTCCACCGCCACCTCCTGGGCAGCTGTGGTGGAGACGTCTCCT
CCCGTGGCCGGGTTCGTGTACGACGGTGTCTCTGGTGCGGACAGACATGA
TGTGGACGTCCAGATGGACATAGAAACCCTGCATACCTGGTGGGAAGGTT
TCCACGACCCCCACACGGCTCTCATGAGTTACTCGTGGAGCATCGGCACC
TGTCCCGGATGTGATGACGTCATGGAGGCTGAAGATGTCGGTTTACTTCA
AGAAGCCTCTGTCGAACACTTGAGCCTCGTTTCTGGGAAACGGTACTACG
TCACGGTGATATCTGTTATGGGTTACAATGGAGCCGGTCTGTCGTCCACC
GCCACCTCCTGGGCAGCTGTGGTGGAGACGTCTCCTCCCGTGGCCGGGTT
CGTGTACGACGGTGTCTCTGGTGCGGACAGACATGATGTGGACGTCCAGA
TGGACATAGAAACCCTGCATACCTGGTGGGAAGGTTTCCACGACCCCCAC
ACGGCTCTCATGAGTTACTCGTGGAGCATCGGCACCTGTCCCGGATGTGA
TGACGTCATGGAGGCTGAAGATGTCGGTTTACTTCAAGAAGCCTCTGTCG
AACACTTGAGCCTCGTTTCTGGGAAACGGTACTACGTCACGGTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97319gene:BL97319Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97319_cuf3transcript:BL97319_cuf3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97319_cuf3-E1BL97319_cuf3-E1-1564476830-388356Branchiostoma lanceolatumexon
BL97319_cuf3-E2BL97319_cuf3-E2-1564476830-388353Branchiostoma lanceolatumexon
BL97319_cuf3-E3BL97319_cuf3-E3-1564476830-388351Branchiostoma lanceolatumexon
BL97319_cuf3-E4BL97319_cuf3-E4-1564476830-388349Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000207genomeSc0000207:316078..317522 -
Properties
Property NameValue
Transcript idBL97319_cuf3
Biotypeprotein_coding