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transcript:BL97315_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97315_cuf1
Unique Nametranscript:BL97315_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97315_cuf1

>transcript:BL97315_cuf1-protein ID=transcript:BL97315_cuf1-protein|Name=transcript:BL97315_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=172bp
MHGTCADGVGQFTCDCEAGWSGVTCNADFDECESSPCAHGTCTDLFNGYT
CQCDPGWDGTDCKIDVDECASNPCQHGTCQDLVNGYSCSCEPGWTNDTCH
QDINECESNPCQHGTCVDRVNGFTCECDWGWTDPTCNKDIDECEFDPCTN
GNCTNYNGSYSCVCDEGWTNNR
Run BLAST on NCBI

mRNA from alignment at Sc0000129:747057..748784+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97315_cuf1 ID=transcript:BL97315_cuf1|Name=transcript:BL97315_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=1728bp|location=Sequence derived from alignment at Sc0000129:747057..748784+ (Branchiostoma lanceolatum)
GGTAACGTTACTTGAATGAAAGCCTTTCGATAGCCTTTGTTGTACATTCA TGCCCTATCGGGCTAAGTACAGGCATACAAATACAAAAGTCGTATAATAA AGTACATATAATGACAGGGCTTTTGATAATAATCTAAAACATGGGTTCTA AAACTACTGTTTGATACATAGGTTTGGCTTCTTCTTGTCTCCTTGTGGTG TAAAGAAATTAGGTTGAGTTGTTTTGTTGATGTGATCCACAGATATTGAC GAGTGCACGTCCAGTCCGTGTATGCACGGCACCTGTGCTGACGGGGTGGG ACAGTTCACCTGTGACTGTGAAGCGGGGTGGTCTGGAGTCACGTGTAACG CAGGTAGGGACGCTCTCTTATGTAAGATCAACGTTTTCGATACGATTGTA TTTCGAGATACTATACGCACGCGATATGTTCTAACTTTTGATTATAGTTG GACGGTAAAGAGGGCCTCGTCTAGTCGCAGATTTGATTTAAATGACAAAT TATTGATAGTTTTGGAAATAATAGCCTTTTTCCTTTCATCAAGGGTTTGT ATTTTCAACGATTATATATATCCATTTACAGACATTCATTTTTGATCTTG ACAGACTTTGATGAATGTGAATCCAGCCCTTGTGCTCACGGCACATGTAC CGATCTATTCAACGGCTACACCTGTCAGTGCGATCCAGGATGGGATGGAA CTGACTGCAAGATAGGTACATGTACATCAGATTTCTTCATTTACTGTCAA ATTGTTCGGCCAAACGTTATTCAACTAGCCCTCTATATTTTGACGTGGGC GATTTTATAGTGTTAGATTCCTGTTTTTTAGACATATGTGTGGCATCAGG TTAACGTTAGTTGCCTATTTCTTGACGAGCGCAAACTCTGTGAATGATTT CATCACGTTGGTGAATGATTGAATAGCCATGTTTTTTTATTCACAATTAT TTGCATGAGCCAACGTTTCGATGACCGCCTGTCATCTTCTGCTAACTACT TTATTCAACAATCCCTGTCCCACTATGTTTAACAGATGTCGACGAGTGTG CCTCCAACCCCTGCCAACACGGCACCTGCCAGGACCTGGTGAACGGGTAC AGCTGCAGCTGCGAGCCGGGATGGACCAATGACACCTGCCATCAAGGTAC TGCAGATGCTGATCAAAAGTCGCAAATAGTGTATGATATTGTCAAGCAAC ACCTAGTAATATGACAATACGAGCATGATAAGATATTATCTTTTGCACAC TCAGATATCAATGAATGTGAATCCAACCCCTGCCAGCATGGAACGTGCGT TGATAGAGTAAACGGCTTCACCTGCGAGTGTGACTGGGGATGGACCGACC CTACCTGCAATAAAGGTACGTTAGAAACCTTACAGACTCCCAGCTAGTAA TTATCCATCGTCAAATACAATGTCCTATACTATGCTATACTACTAAGTTC CTGTGTATAACCTTGAGTAAAAAAAAGAAGATGTTTGCATCTTGCAAGTG AACAGAAACTTTCGCGGATGAAACCATAAAGTACTTTGTAACCCGCTTGA TTTGTTTTATATAATTATCATACAGTGCGATATAAATCCTTTAAAGCTTT CTTTAACATCTTTAATTTTGCACAGATATTGACGAGTGTGAGTTCGACCC ATGTACAAACGGCAACTGTACTAACTATAACGGAAGCTACTCCTGTGTCT GCGACGAGGGATGGACCAACAATCGGAC

Coding sequence (CDS) from alignment at Sc0000129:747057..748784+

>transcript:BL97315_cuf1 ID=transcript:BL97315_cuf1|Name=transcript:BL97315_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2580bp|location=Sequence derived from alignment at Sc0000129:747057..748784+ (Branchiostoma lanceolatum)
ATGCACGGCACCTGTGCTGACGGGGTGGGACAGTTCACCTGTGACTGTGA
AGCGGGGTGGTCTGGAGTCACGTGTAACGCAGACTTTGATGAATGTGAAT
CCAGCCCTTGTGCTCACGGCACATGTACCGATCTATTCAACGGCTACACC
TGTCAGTGCGATCCAGGATGGGATGGAACTGACTGCAAGATAGATGTCGA
CGAGTGTGCCTCCAACCCCTGCCAACACGGCACCTGCCAGGACCTGGTGA
ACGGGTACAGCTGCAGCTGCGAGCCGGGATGGACCAATGACACCTGCCAT
CAAGATATCAATGAATGTGAATCCAACCCCTGCCAGCATGGAACGTGCGT
TGATAGAGTAAACGGCTTCACCTGCGAGTGTGACTGGGGATGGACCGACC
CTACCTGCAATAAAGATATTGACGAGTGTGAGTTCGACCCATGTACAAAC
GGCAACTGTACTAACTATAACGGAAGCTACTCCTGTGTCTGCGACGAGGG
ATGGACCAACAATCGGATGCACGGCACCTGTGCTGACGGGGTGGGACAGT
TCACCTGTGACTGTGAAGCGGGGTGGTCTGGAGTCACGTGTAACGCAGAC
TTTGATGAATGTGAATCCAGCCCTTGTGCTCACGGCACATGTACCGATCT
ATTCAACGGCTACACCTGTCAGTGCGATCCAGGATGGGATGGAACTGACT
GCAAGATAGATGTCGACGAGTGTGCCTCCAACCCCTGCCAACACGGCACC
TGCCAGGACCTGGTGAACGGGTACAGCTGCAGCTGCGAGCCGGGATGGAC
CAATGACACCTGCCATCAAGATATCAATGAATGTGAATCCAACCCCTGCC
AGCATGGAACGTGCGTTGATAGAGTAAACGGCTTCACCTGCGAGTGTGAC
TGGGGATGGACCGACCCTACCTGCAATAAAGATATTGACGAGTGTGAGTT
CGACCCATGTACAAACGGCAACTGTACTAACTATAACGGAAGCTACTCCT
GTGTCTGCGACGAGGGATGGACCAACAATCGGATGCACGGCACCTGTGCT
GACGGGGTGGGACAGTTCACCTGTGACTGTGAAGCGGGGTGGTCTGGAGT
CACGTGTAACGCAGACTTTGATGAATGTGAATCCAGCCCTTGTGCTCACG
GCACATGTACCGATCTATTCAACGGCTACACCTGTCAGTGCGATCCAGGA
TGGGATGGAACTGACTGCAAGATAGATGTCGACGAGTGTGCCTCCAACCC
CTGCCAACACGGCACCTGCCAGGACCTGGTGAACGGGTACAGCTGCAGCT
GCGAGCCGGGATGGACCAATGACACCTGCCATCAAGATATCAATGAATGT
GAATCCAACCCCTGCCAGCATGGAACGTGCGTTGATAGAGTAAACGGCTT
CACCTGCGAGTGTGACTGGGGATGGACCGACCCTACCTGCAATAAAGATA
TTGACGAGTGTGAGTTCGACCCATGTACAAACGGCAACTGTACTAACTAT
AACGGAAGCTACTCCTGTGTCTGCGACGAGGGATGGACCAACAATCGGAT
GCACGGCACCTGTGCTGACGGGGTGGGACAGTTCACCTGTGACTGTGAAG
CGGGGTGGTCTGGAGTCACGTGTAACGCAGACTTTGATGAATGTGAATCC
AGCCCTTGTGCTCACGGCACATGTACCGATCTATTCAACGGCTACACCTG
TCAGTGCGATCCAGGATGGGATGGAACTGACTGCAAGATAGATGTCGACG
AGTGTGCCTCCAACCCCTGCCAACACGGCACCTGCCAGGACCTGGTGAAC
GGGTACAGCTGCAGCTGCGAGCCGGGATGGACCAATGACACCTGCCATCA
AGATATCAATGAATGTGAATCCAACCCCTGCCAGCATGGAACGTGCGTTG
ATAGAGTAAACGGCTTCACCTGCGAGTGTGACTGGGGATGGACCGACCCT
ACCTGCAATAAAGATATTGACGAGTGTGAGTTCGACCCATGTACAAACGG
CAACTGTACTAACTATAACGGAAGCTACTCCTGTGTCTGCGACGAGGGAT
GGACCAACAATCGGATGCACGGCACCTGTGCTGACGGGGTGGGACAGTTC
ACCTGTGACTGTGAAGCGGGGTGGTCTGGAGTCACGTGTAACGCAGACTT
TGATGAATGTGAATCCAGCCCTTGTGCTCACGGCACATGTACCGATCTAT
TCAACGGCTACACCTGTCAGTGCGATCCAGGATGGGATGGAACTGACTGC
AAGATAGATGTCGACGAGTGTGCCTCCAACCCCTGCCAACACGGCACCTG
CCAGGACCTGGTGAACGGGTACAGCTGCAGCTGCGAGCCGGGATGGACCA
ATGACACCTGCCATCAAGATATCAATGAATGTGAATCCAACCCCTGCCAG
CATGGAACGTGCGTTGATAGAGTAAACGGCTTCACCTGCGAGTGTGACTG
GGGATGGACCGACCCTACCTGCAATAAAGATATTGACGAGTGTGAGTTCG
ACCCATGTACAAACGGCAACTGTACTAACTATAACGGAAGCTACTCCTGT
GTCTGCGACGAGGGATGGACCAACAATCGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97315gene:BL97315Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97315_cuf1transcript:BL97315_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97315_cuf1-E1BL97315_cuf1-E1-1564476830-331805Branchiostoma lanceolatumexon
BL97315_cuf1-E2BL97315_cuf1-E2-1564476830-331807Branchiostoma lanceolatumexon
BL97315_cuf1-E3BL97315_cuf1-E3-1564476830-331809Branchiostoma lanceolatumexon
BL97315_cuf1-E4BL97315_cuf1-E4-1564476830-331811Branchiostoma lanceolatumexon
BL97315_cuf1-E5BL97315_cuf1-E5-1564476830-331814Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000129genomeSc0000129:747057..748784 +
Properties
Property NameValue
Transcript idBL97315_cuf1
Biotypeprotein_coding