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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97313_cuf0 >transcript:BL97313_cuf0-protein ID=transcript:BL97313_cuf0-protein|Name=transcript:BL97313_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=356bp
FILTIAIFHPFLIILHILAPNTKPGRVMKIPAIRGMCWFFSLLELLIILI
VEAQMYRVSSEDIDRMVQKIPTSGLQLSWTQAFIFIWMSGLFVEEINKVW
YRGLSPYFKSFWNLLDFMAVALYTSYVALRCLAILQWDGHDMSLDWAARA
KWNSFQPTIVADAVFAMFTLDMFLRAMCFLRMSRNLGTLQISFGRMVMDI
IKFVIFLALVDLAFACGFNQLYWFYGSVHNYLCEKYNQTNLKNIDCSKAH
GYGTLSSTILTLFWAEFGMSDLSMLQLKPGPSPEEALQIQDWPVFTEVVG
TAMFGLFQVVSVLVLLNLLIAIMSTSYQMTEDNKDQEWTYVSVSDTFSVM
RGNLSL Run BLAST on NCBI mRNA from alignment at Sc0000129:533503..535965- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97313_cuf0 ID=transcript:BL97313_cuf0|Name=transcript:BL97313_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2463bp|location=Sequence derived from alignment at Sc0000129:533503..535965- (Branchiostoma lanceolatum)
GTTCATCTTAACAATCGCCATATTTCACCCATTTCTGATTATTCTGCACA
TTTTGGCACCAAATACAAAGGTACGTAAGGTTCATGTCCTTTCATGCGCT
TGTCCATTGTTTTTATCTATAAGTACCATTAGTTTAATGGAGAAAATGTT
CTTGTCATTCTAGCCGGGGAGAGTCATGAAGATCCCAGCAATCCGTGGAA
TGTGCTGGTTCTTTTCCCTGTTGGAGCTGCTCATTATCCTGATTGTAGAG
GCGCAGATGTACCGGGTGAGCAGCGAGGATATAGACAGGATGGTGCAGAA
GATCCCGACCTCTGGCTTACAACTGTCCTGGACACAAGCTTTCATCTTCA
TATGGATGTCTGGTATGACTAGGGATCTAACTCTACGAAATATTCTGGGA
AAATGGACTAATTTATGGTAAAGGAAAGGACACAAATTAGCATGGAATTA
GAATTATTACAATTTCTGCCCATCCAAGTGGTCCTTTTTTATTCTTCAAT
TTCACAAGAAGATCATAACACTAGTTCTGAATGATACAAACGGTTAAGTG
GTCTGATACGGGAGGGTCAAAACTTAATCCCTTCCATTTTGTGCTAAAGG
AGACTTCAAGTGTACTCAGGTCAATTTGCCCACTTGTAGACTGTATTAAT
GACAGACGTCACTTGTGTGATTCACGGTTGTGCAAACCTGGCCACGCGTA
AAGAGTACTGTAATTATTGTTTCTTTCACTGTAACTTTAAGTTCACTGTT
TTCACTGTCACCTCTGTACCGTGAACTTATCATCACCGTGAAAAACCTAT
TTATGATTTCTCCACACATCCTTTCTTTAAATCACTTTCTACCACCGTGA
AGTTAAAGTTCAGTGAAAATGTAAATTTTTGTTACACAGTGAAATTTTGC
TACCGTGAACTTAAAGTATATGGGTGGCTCTGAATCATGTCTTACTCATC
TGGACGAAAAGCAATCAGACCAAAGAATCGTACCAGCACTGTACTAAGTA
GTGTCTACAAGAAATAATATACATGCAATATTCGCCATTATTTTAGGACT
CTTCGTTGAGGAAATCAACAAAGTTTGGTACCGAGGACTGTCTCCGTACT
TCAAAAGCTTCTGGAATCTGCTTGACTTCATGGCCGTTGCACTCTACACT
AGTTATGTCGCCTTGCGATGTCTGGCCATTTTGCAGGTGAGAAAGGTTTC
GGTAAATGCATTTTTCGTCTCTGGACACAGAGGCCGCCAGTTTACTCACA
TTACGCAACAGTCTTGTATTGATATTTCAAACCTATGTGAAGTGGTCATA
GAAGTAGTGCATGTGTTTCAAAATAACGGTTTCTTATCACAACAAATTGA
GGGACCCTTGTTGTTCTATCTAGTGGGATGGCCATGATATGTCCCTGGAC
TGGGCAGCCAGAGCTAAATGGAACAGTTTCCAGCCGACCATCGTGGCCGA
TGCCGTGTTCGCCATGTTTACACTAGATATGTTTCTACGCGCGATGTGCT
TTCTGCGCATGTCACGTAATCTGGGCACTCTCCAGATCTCCTTCGGCCGG
ATGGTCATGGACATCATCAAGTTCGTCATTTTCCTCGCGCTCGTGGATCT
CGCGTTTGCCTGTGGTTTCAACCAACTCTACTGGTTCTATGGGTCTGTGC
ACAACTACCTCTGCGAAAAGTATAATCAGACCAACTTGAAGAACATTGAC
TGCTCTAAAGCTCATGGTTACGGCACGTGAGTATTGTCCCTCTATGGTGT
ACTGTTTTTTTTCACGACCATACGTATACACGTGGTATACCGCTGCCTCG
ATATTTGTACAATGCTATCCCAAAGACACGGTACTTAACGTTTCTGACGG
TCATGCTCTTGTCACGCAGCCTCTCCAGTACGATTCTGACTCTGTTCTGG
GCGGAGTTCGGCATGAGTGATCTCTCCATGCTGCAGCTGAAACCCGGCCC
CAGCCCGGAGGAGGCGCTGCAGATCCAGGACTGGCCAGTCTTTACCGAGG
TGGTGGGGACGGCCATGTTTGGGCTGTTTCAAGTGGTGTCAGTACTTGTA
CTTCTCAACCTGCTGATAGCCATCATGAGCACGTCCTACCAGATGACTGA
GGTGCTGGTTTTACTGTCATTTGTATCCCAAGGGACTGGCGTGTGTGTGT
GTCTGTGTGTGTCTGTGTGTGTGTCTGTGTGTGTGCGTGTTTGTGTGTGT
GTGTGTTTGCGCGTGTGTGTGTTTGTTTGATTGTTTGTTTGTTTGTTTGT
TTGTTTGTTTGTTTGTTTGCAAAGTACAAGGATGTCTTCATTCATGTCAC
TAGCTTTCTTGACCTGCTACTATCATGTGTATATGGTGTATATGAGTCAA
TGCTCTCTGCTTTTTGTTGCTAAATCATATCCACAGGACAACAAAGACCA
GGAGTGGACGTACGTCTCTGTAAGTGACACATTTTCCGTCATGAGAGGAA
ATTTGTCGCTTCC Coding sequence (CDS) from alignment at Sc0000129:533503..535965- >transcript:BL97313_cuf0 ID=transcript:BL97313_cuf0|Name=transcript:BL97313_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=6408bp|location=Sequence derived from alignment at Sc0000129:533503..535965- (Branchiostoma lanceolatum)
TTCATCTTAACAATCGCCATATTTCACCCATTTCTGATTATTCTGCACAT
TTTGGCACCAAATACAAAGCCGGGGAGAGTCATGAAGATCCCAGCAATCC
GTGGAATGTGCTGGTTCTTTTCCCTGTTGGAGCTGCTCATTATCCTGATT
GTAGAGGCGCAGATGTACCGGGTGAGCAGCGAGGATATAGACAGGATGGT
GCAGAAGATCCCGACCTCTGGCTTACAACTGTCCTGGACACAAGCTTTCA
TCTTCATATGGATGTCTGGACTCTTCGTTGAGGAAATCAACAAAGTTTGG
TACCGAGGACTGTCTCCGTACTTCAAAAGCTTCTGGAATCTGCTTGACTT
CATGGCCGTTGCACTCTACACTAGTTATGTCGCCTTGCGATGTCTGGCCA
TTTTGCAGTGGGATGGCCATGATATGTCCCTGGACTGGGCAGCCAGAGCT
AAATGGAACAGTTTCCAGCCGACCATCGTGGCCGATGCCGTGTTCGCCAT
GTTTACACTAGATATGTTTCTACGCGCGATGTGCTTTCTGCGCATGTCAC
GTAATCTGGGCACTCTCCAGATCTCCTTCGGCCGGATGGTCATGGACATC
ATCAAGTTCGTCATTTTCCTCGCGCTCGTGGATCTCGCGTTTGCCTGTGG
TTTCAACCAACTCTACTGGTTCTATGGGTCTGTGCACAACTACCTCTGCG
AAAAGTATAATCAGACCAACTTGAAGAACATTGACTGCTCTAAAGCTCAT
GGTTACGGCACCCTCTCCAGTACGATTCTGACTCTGTTCTGGGCGGAGTT
CGGCATGAGTGATCTCTCCATGCTGCAGCTGAAACCCGGCCCCAGCCCGG
AGGAGGCGCTGCAGATCCAGGACTGGCCAGTCTTTACCGAGGTGGTGGGG
ACGGCCATGTTTGGGCTGTTTCAAGTGGTGTCAGTACTTGTACTTCTCAA
CCTGCTGATAGCCATCATGAGCACGTCCTACCAGATGACTGAGGACAACA
AAGACCAGGAGTGGACGTACGTCTCTGTAAGTGACACATTTTCCGTCATG
AGAGGAAATTTGTCGCTTTTCATCTTAACAATCGCCATATTTCACCCATT
TCTGATTATTCTGCACATTTTGGCACCAAATACAAAGCCGGGGAGAGTCA
TGAAGATCCCAGCAATCCGTGGAATGTGCTGGTTCTTTTCCCTGTTGGAG
CTGCTCATTATCCTGATTGTAGAGGCGCAGATGTACCGGGTGAGCAGCGA
GGATATAGACAGGATGGTGCAGAAGATCCCGACCTCTGGCTTACAACTGT
CCTGGACACAAGCTTTCATCTTCATATGGATGTCTGGACTCTTCGTTGAG
GAAATCAACAAAGTTTGGTACCGAGGACTGTCTCCGTACTTCAAAAGCTT
CTGGAATCTGCTTGACTTCATGGCCGTTGCACTCTACACTAGTTATGTCG
CCTTGCGATGTCTGGCCATTTTGCAGTGGGATGGCCATGATATGTCCCTG
GACTGGGCAGCCAGAGCTAAATGGAACAGTTTCCAGCCGACCATCGTGGC
CGATGCCGTGTTCGCCATGTTTACACTAGATATGTTTCTACGCGCGATGT
GCTTTCTGCGCATGTCACGTAATCTGGGCACTCTCCAGATCTCCTTCGGC
CGGATGGTCATGGACATCATCAAGTTCGTCATTTTCCTCGCGCTCGTGGA
TCTCGCGTTTGCCTGTGGTTTCAACCAACTCTACTGGTTCTATGGGTCTG
TGCACAACTACCTCTGCGAAAAGTATAATCAGACCAACTTGAAGAACATT
GACTGCTCTAAAGCTCATGGTTACGGCACCCTCTCCAGTACGATTCTGAC
TCTGTTCTGGGCGGAGTTCGGCATGAGTGATCTCTCCATGCTGCAGCTGA
AACCCGGCCCCAGCCCGGAGGAGGCGCTGCAGATCCAGGACTGGCCAGTC
TTTACCGAGGTGGTGGGGACGGCCATGTTTGGGCTGTTTCAAGTGGTGTC
AGTACTTGTACTTCTCAACCTGCTGATAGCCATCATGAGCACGTCCTACC
AGATGACTGAGGACAACAAAGACCAGGAGTGGACGTACGTCTCTGTAAGT
GACACATTTTCCGTCATGAGAGGAAATTTGTCGCTTTTCATCTTAACAAT
CGCCATATTTCACCCATTTCTGATTATTCTGCACATTTTGGCACCAAATA
CAAAGCCGGGGAGAGTCATGAAGATCCCAGCAATCCGTGGAATGTGCTGG
TTCTTTTCCCTGTTGGAGCTGCTCATTATCCTGATTGTAGAGGCGCAGAT
GTACCGGGTGAGCAGCGAGGATATAGACAGGATGGTGCAGAAGATCCCGA
CCTCTGGCTTACAACTGTCCTGGACACAAGCTTTCATCTTCATATGGATG
TCTGGACTCTTCGTTGAGGAAATCAACAAAGTTTGGTACCGAGGACTGTC
TCCGTACTTCAAAAGCTTCTGGAATCTGCTTGACTTCATGGCCGTTGCAC
TCTACACTAGTTATGTCGCCTTGCGATGTCTGGCCATTTTGCAGTGGGAT
GGCCATGATATGTCCCTGGACTGGGCAGCCAGAGCTAAATGGAACAGTTT
CCAGCCGACCATCGTGGCCGATGCCGTGTTCGCCATGTTTACACTAGATA
TGTTTCTACGCGCGATGTGCTTTCTGCGCATGTCACGTAATCTGGGCACT
CTCCAGATCTCCTTCGGCCGGATGGTCATGGACATCATCAAGTTCGTCAT
TTTCCTCGCGCTCGTGGATCTCGCGTTTGCCTGTGGTTTCAACCAACTCT
ACTGGTTCTATGGGTCTGTGCACAACTACCTCTGCGAAAAGTATAATCAG
ACCAACTTGAAGAACATTGACTGCTCTAAAGCTCATGGTTACGGCACCCT
CTCCAGTACGATTCTGACTCTGTTCTGGGCGGAGTTCGGCATGAGTGATC
TCTCCATGCTGCAGCTGAAACCCGGCCCCAGCCCGGAGGAGGCGCTGCAG
ATCCAGGACTGGCCAGTCTTTACCGAGGTGGTGGGGACGGCCATGTTTGG
GCTGTTTCAAGTGGTGTCAGTACTTGTACTTCTCAACCTGCTGATAGCCA
TCATGAGCACGTCCTACCAGATGACTGAGGACAACAAAGACCAGGAGTGG
ACGTACGTCTCTGTAAGTGACACATTTTCCGTCATGAGAGGAAATTTGTC
GCTTTTCATCTTAACAATCGCCATATTTCACCCATTTCTGATTATTCTGC
ACATTTTGGCACCAAATACAAAGCCGGGGAGAGTCATGAAGATCCCAGCA
ATCCGTGGAATGTGCTGGTTCTTTTCCCTGTTGGAGCTGCTCATTATCCT
GATTGTAGAGGCGCAGATGTACCGGGTGAGCAGCGAGGATATAGACAGGA
TGGTGCAGAAGATCCCGACCTCTGGCTTACAACTGTCCTGGACACAAGCT
TTCATCTTCATATGGATGTCTGGACTCTTCGTTGAGGAAATCAACAAAGT
TTGGTACCGAGGACTGTCTCCGTACTTCAAAAGCTTCTGGAATCTGCTTG
ACTTCATGGCCGTTGCACTCTACACTAGTTATGTCGCCTTGCGATGTCTG
GCCATTTTGCAGTGGGATGGCCATGATATGTCCCTGGACTGGGCAGCCAG
AGCTAAATGGAACAGTTTCCAGCCGACCATCGTGGCCGATGCCGTGTTCG
CCATGTTTACACTAGATATGTTTCTACGCGCGATGTGCTTTCTGCGCATG
TCACGTAATCTGGGCACTCTCCAGATCTCCTTCGGCCGGATGGTCATGGA
CATCATCAAGTTCGTCATTTTCCTCGCGCTCGTGGATCTCGCGTTTGCCT
GTGGTTTCAACCAACTCTACTGGTTCTATGGGTCTGTGCACAACTACCTC
TGCGAAAAGTATAATCAGACCAACTTGAAGAACATTGACTGCTCTAAAGC
TCATGGTTACGGCACCCTCTCCAGTACGATTCTGACTCTGTTCTGGGCGG
AGTTCGGCATGAGTGATCTCTCCATGCTGCAGCTGAAACCCGGCCCCAGC
CCGGAGGAGGCGCTGCAGATCCAGGACTGGCCAGTCTTTACCGAGGTGGT
GGGGACGGCCATGTTTGGGCTGTTTCAAGTGGTGTCAGTACTTGTACTTC
TCAACCTGCTGATAGCCATCATGAGCACGTCCTACCAGATGACTGAGGAC
AACAAAGACCAGGAGTGGACGTACGTCTCTGTAAGTGACACATTTTCCGT
CATGAGAGGAAATTTGTCGCTTTTCATCTTAACAATCGCCATATTTCACC
CATTTCTGATTATTCTGCACATTTTGGCACCAAATACAAAGCCGGGGAGA
GTCATGAAGATCCCAGCAATCCGTGGAATGTGCTGGTTCTTTTCCCTGTT
GGAGCTGCTCATTATCCTGATTGTAGAGGCGCAGATGTACCGGGTGAGCA
GCGAGGATATAGACAGGATGGTGCAGAAGATCCCGACCTCTGGCTTACAA
CTGTCCTGGACACAAGCTTTCATCTTCATATGGATGTCTGGACTCTTCGT
TGAGGAAATCAACAAAGTTTGGTACCGAGGACTGTCTCCGTACTTCAAAA
GCTTCTGGAATCTGCTTGACTTCATGGCCGTTGCACTCTACACTAGTTAT
GTCGCCTTGCGATGTCTGGCCATTTTGCAGTGGGATGGCCATGATATGTC
CCTGGACTGGGCAGCCAGAGCTAAATGGAACAGTTTCCAGCCGACCATCG
TGGCCGATGCCGTGTTCGCCATGTTTACACTAGATATGTTTCTACGCGCG
ATGTGCTTTCTGCGCATGTCACGTAATCTGGGCACTCTCCAGATCTCCTT
CGGCCGGATGGTCATGGACATCATCAAGTTCGTCATTTTCCTCGCGCTCG
TGGATCTCGCGTTTGCCTGTGGTTTCAACCAACTCTACTGGTTCTATGGG
TCTGTGCACAACTACCTCTGCGAAAAGTATAATCAGACCAACTTGAAGAA
CATTGACTGCTCTAAAGCTCATGGTTACGGCACCCTCTCCAGTACGATTC
TGACTCTGTTCTGGGCGGAGTTCGGCATGAGTGATCTCTCCATGCTGCAG
CTGAAACCCGGCCCCAGCCCGGAGGAGGCGCTGCAGATCCAGGACTGGCC
AGTCTTTACCGAGGTGGTGGGGACGGCCATGTTTGGGCTGTTTCAAGTGG
TGTCAGTACTTGTACTTCTCAACCTGCTGATAGCCATCATGAGCACGTCC
TACCAGATGACTGAGGACAACAAAGACCAGGAGTGGACGTACGTCTCTGT
AAGTGACACATTTTCCGTCATGAGAGGAAATTTGTCGCTTTTCATCTTAA
CAATCGCCATATTTCACCCATTTCTGATTATTCTGCACATTTTGGCACCA
AATACAAAGCCGGGGAGAGTCATGAAGATCCCAGCAATCCGTGGAATGTG
CTGGTTCTTTTCCCTGTTGGAGCTGCTCATTATCCTGATTGTAGAGGCGC
AGATGTACCGGGTGAGCAGCGAGGATATAGACAGGATGGTGCAGAAGATC
CCGACCTCTGGCTTACAACTGTCCTGGACACAAGCTTTCATCTTCATATG
GATGTCTGGACTCTTCGTTGAGGAAATCAACAAAGTTTGGTACCGAGGAC
TGTCTCCGTACTTCAAAAGCTTCTGGAATCTGCTTGACTTCATGGCCGTT
GCACTCTACACTAGTTATGTCGCCTTGCGATGTCTGGCCATTTTGCAGTG
GGATGGCCATGATATGTCCCTGGACTGGGCAGCCAGAGCTAAATGGAACA
GTTTCCAGCCGACCATCGTGGCCGATGCCGTGTTCGCCATGTTTACACTA
GATATGTTTCTACGCGCGATGTGCTTTCTGCGCATGTCACGTAATCTGGG
CACTCTCCAGATCTCCTTCGGCCGGATGGTCATGGACATCATCAAGTTCG
TCATTTTCCTCGCGCTCGTGGATCTCGCGTTTGCCTGTGGTTTCAACCAA
CTCTACTGGTTCTATGGGTCTGTGCACAACTACCTCTGCGAAAAGTATAA
TCAGACCAACTTGAAGAACATTGACTGCTCTAAAGCTCATGGTTACGGCA
CCCTCTCCAGTACGATTCTGACTCTGTTCTGGGCGGAGTTCGGCATGAGT
GATCTCTCCATGCTGCAGCTGAAACCCGGCCCCAGCCCGGAGGAGGCGCT
GCAGATCCAGGACTGGCCAGTCTTTACCGAGGTGGTGGGGACGGCCATGT
TTGGGCTGTTTCAAGTGGTGTCAGTACTTGTACTTCTCAACCTGCTGATA
GCCATCATGAGCACGTCCTACCAGATGACTGAGGACAACAAAGACCAGGA
GTGGACGTACGTCTCTGTAAGTGACACATTTTCCGTCATGAGAGGAAATT
TGTCGCTT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000129 | genome | Sc0000129:533503..535965 - |
Properties
| Property Name | Value |
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| Transcript id | BL97313_cuf0 |
| Biotype | protein_coding |
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