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transcript:BL97311_cuf4 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97311_cuf4
Unique Nametranscript:BL97311_cuf4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97311_cuf4

>transcript:BL97311_cuf4-protein ID=transcript:BL97311_cuf4-protein|Name=transcript:BL97311_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=109bp
EFDPAAEFGDSSVTGTLTDGTVVSAGQDVPSGSSLAVQCNLCVCQDGVFT
CTQDLCRVDGGVSEWSGWSNCSLPCGGLGTRTRTRDCSNPAPENGGQDCT
AALTETVYC
Run BLAST on NCBI

mRNA from alignment at Sc0000038:1604025..1605357+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97311_cuf4 ID=transcript:BL97311_cuf4|Name=transcript:BL97311_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=1333bp|location=Sequence derived from alignment at Sc0000038:1604025..1605357+ (Branchiostoma lanceolatum)
GTGAGTTTGACCCTGCTGCAGAGTTTGGGGACAGCAGTGTGACAGGGACC CTGACAGATGGGACTGTGGTGTCAGCTGGGCAGGATGTTCCCTCTGGGTC CAGCCTGGCTGTACAATGTAACCTCTGGTATGTGTGACATTGACAGAGGC AAAGGACTTCATTTTTAAAAGATTCATTTGGCTGTACAAAAAAGTACAGC CAGAAAAAAAGTACAATTGATGTGGTGGCTTCAGCATTGTGAAAAATTAA CCTTTTGGATTTCTTTGGGAAACACACTTTGTTGTGTTTTGTATTCTTTG GCTATTTTCACCAAAAAAAAGTATAATTTGGGTTCATGCTAAGCCAAATG ACCTTGAATTCAACAGTACATAGACCTTTGCGCATCAGAAAAGACACTGT AGCCGAGTAGTTCTCGTTTGGAACTTTATTTGAGCCCACACCGACTAGTT TCCCCTTCTGTGTGGCTTCTTCAATGATCAGAGCTCGATTGAGTACAAGT ACAGTGTGTTCTGGCCTTTATAGGCCAGGTAGATAGTTATGTGATTGTAG GCCCAGTTATATGTATGTCCCCTGCTGAACATTTGATTTTGAGTTTTCCC TGCTCTTCCCTCCAGTGTGTGCCAGGATGGTGTGTTTACCTGTACCCAGG ACCTCTGCAGGGGTAAGGACAAGTCACTCCCTAATGTGTTGTCATATAAA ACATGATGCTTAGAACGTTTGTCAGCATTTGTCAAGCTTCTTTTAACTTT AAGTTAGTGAAACTGCTTTTGAAGCAGTTCATGTACCCTACTTACTATGA ATCATGATGGCTATTTCAAAGCCAAAGTATAGAAAATGCACAGAGATTAA ATAGGATGGCAGCAGAAATAATAGTTTAAGGCTTTGCAATATTTTCAACT ATTGGAAATACTATGCATAATGTGCTTTAAATATAATGGCACCCCATATA TATATATAGTGCTTACTCCTTTTGTGAGTGTCTGGGTGGTCAGTCAATCA CAAATGTGATTATAATCAGTAGCGAGAACGCACATTTCCTTTCTTGTCAA CATTTGTTTACATACTGTTGCTTTGTGAACGTCAGGAACTGGTTTCTAGA ACATGTCGCTAGGCTAGGCAGGATGGGCTACCAGAAACCTGTTAGGATGA TGTCTTGTACTTCCTGAATTGTTCAGTTGACGGCGGTGTATCAGAGTGGA GTGGTTGGAGTAACTGTTCCCTGCCGTGTGGAGGGCTGGGCACCAGAACC AGGACCCGGGACTGCAGCAACCCTGCCCCTGAGAATGGCGGGCAGGACTG TACTGCCGCGCTCACAGAGACGGTGTACTGTCA

Coding sequence (CDS) from alignment at Sc0000038:1604025..1605357+

>transcript:BL97311_cuf4 ID=transcript:BL97311_cuf4|Name=transcript:BL97311_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=981bp|location=Sequence derived from alignment at Sc0000038:1604025..1605357+ (Branchiostoma lanceolatum)
GAGTTTGACCCTGCTGCAGAGTTTGGGGACAGCAGTGTGACAGGGACCCT
GACAGATGGGACTGTGGTGTCAGCTGGGCAGGATGTTCCCTCTGGGTCCA
GCCTGGCTGTACAATGTAACCTCTGTGTGTGCCAGGATGGTGTGTTTACC
TGTACCCAGGACCTCTGCAGGGTTGACGGCGGTGTATCAGAGTGGAGTGG
TTGGAGTAACTGTTCCCTGCCGTGTGGAGGGCTGGGCACCAGAACCAGGA
CCCGGGACTGCAGCAACCCTGCCCCTGAGAATGGCGGGCAGGACTGTACT
GCCGCGCTCACAGAGACGGTGTACTGTGAGTTTGACCCTGCTGCAGAGTT
TGGGGACAGCAGTGTGACAGGGACCCTGACAGATGGGACTGTGGTGTCAG
CTGGGCAGGATGTTCCCTCTGGGTCCAGCCTGGCTGTACAATGTAACCTC
TGTGTGTGCCAGGATGGTGTGTTTACCTGTACCCAGGACCTCTGCAGGGT
TGACGGCGGTGTATCAGAGTGGAGTGGTTGGAGTAACTGTTCCCTGCCGT
GTGGAGGGCTGGGCACCAGAACCAGGACCCGGGACTGCAGCAACCCTGCC
CCTGAGAATGGCGGGCAGGACTGTACTGCCGCGCTCACAGAGACGGTGTA
CTGTGAGTTTGACCCTGCTGCAGAGTTTGGGGACAGCAGTGTGACAGGGA
CCCTGACAGATGGGACTGTGGTGTCAGCTGGGCAGGATGTTCCCTCTGGG
TCCAGCCTGGCTGTACAATGTAACCTCTGTGTGTGCCAGGATGGTGTGTT
TACCTGTACCCAGGACCTCTGCAGGGTTGACGGCGGTGTATCAGAGTGGA
GTGGTTGGAGTAACTGTTCCCTGCCGTGTGGAGGGCTGGGCACCAGAACC
AGGACCCGGGACTGCAGCAACCCTGCCCCTGAGAATGGCGGGCAGGACTG
TACTGCCGCGCTCACAGAGACGGTGTACTGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97311gene:BL97311Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97311_cuf4transcript:BL97311_cuf4-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97311_cuf4-E1BL97311_cuf4-E1-1564476830-198483Branchiostoma lanceolatumexon
BL97311_cuf4-E2BL97311_cuf4-E2-1564476830-198485Branchiostoma lanceolatumexon
BL97311_cuf4-E3BL97311_cuf4-E3-1564476830-198488Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000038genomeSc0000038:1604025..1605357 +
Properties
Property NameValue
Transcript idBL97311_cuf4
Biotypeprotein_coding