transcript:BL97309_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97309_cuf2
Unique Nametranscript:BL97309_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97309_cuf2

>transcript:BL97309_cuf2-protein ID=transcript:BL97309_cuf2-protein|Name=transcript:BL97309_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=217bp
DHGNWGAWALWTTCSATCGTGFTARQRECNNPAPSNGGNFCEGSATEGVQ
CNMGSCNAHLCENITGSVYDECGPACPRSCEDVSACVWSCQPGCYCPSGL
VLNENRTACVDTSACSCLDLETDTRHPPDTVITKDCNQCVCKNGRFSCTA
EQCEVPGGWCYWGAWSMTSCQGSCDSMQNRQRVCACPAPTSQEGMCADIH
SLEDGYGVQQEQAPCEP
Run BLAST on NCBI

mRNA from alignment at Sc0000038:1597547..1599837+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97309_cuf2 ID=transcript:BL97309_cuf2|Name=transcript:BL97309_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2291bp|location=Sequence derived from alignment at Sc0000038:1597547..1599837+ (Branchiostoma lanceolatum)
AGACCACGGTAACTGGGGCGCCTGGGCATTGTGGACCACCTGCTCTGCCA CCTGCGGCACCGGCTTCACGGCACGCCAGCGGGAATGTAACAACCCAGCG CCGTCCAACGGCGGGAACTTCTGTGAGGGCTCCGCCACAGAAGGGGTGCA GTGTAACATGGGGAGCTGTAATGGTAAGGATAAATCCATGTGCAGAATGG AAAATGTAATGATCAAAGTAAAAGTGTGGAAATATCTTGATAGTTCCAAA CAATAATTTGTTTACTGTGAACGACAAAATGTACTGAGGGTAAAAGTCTG TCATGGCTTTACAGAGTTCACCTCAAGGCAGGATTTTCCGGGGTCAGAAT TGATGTCATTTAATGACCAGCTGCTGCCATACCATACCATACCTGTAAGA GTGAGAGTGAGATGTTAAACTGTACTGCCATAAATGGTTATACTGACTGG ATGATCAATGCAGATTTATTTAAAATACAAGGCATCTGCCCTGCAAATTC AATCATTTTGACTGCTGTCATTTAATTTATATCAACTTCAACAACTTTTA GACTACTACAGTAACTGTGGCATCTACTTCAATATCAAACCCTTTTAATT TGTCTTGATTGTGTCCAATATTAGACATTTCAGCCAGACTCATCCTCTTT ACTTGATATAGGTACTAAATGATGTTTATATTTCTGCACAATTTAGCCCA TTTGTGTGAGAATATCACGGGTTCTGTGTACGATGAATGCGGCCCTGCCT GTCCCCGATCTTGCGAGGATGTCTCCGCCTGTGTGTGGTCGTGCCAGCCG GGCTGCTACTGTCCCAGCGGGCTGGTTCTGAACGAGAACCGGACAGCCTG CGTGGACACGTCGGCCTGCAGCTGTCTGGACCTGGAGACCGACACCAGAC ATCCACCAGACACTGTCATCACTAAGGACTGCAACCAATGGTAGCCATCA TGCAAATGTCATATTATATAATATTTCCCTTGCTAGATTTCGTTCCTTTC CTACAATTCCTCAATTAAGAAACTGATATATTATGAGCGTAAAAGATCTA GAAACATATTGGAAAGTGTGGTAAATTACATGTTCAAGTTCTGTTATATC ATTGTTGATAGGGGTTCTCATTTCTTTTTGTGATCATAGACCATGTTTCC TGATTTTACATTTACAGTTTTGTTCTTACACATATGTGCCACTTATTTTG TGTGTTTGCCATGGGTTTTTTTTCTATGGAGAATATCTTCTGAAGACTAA TTAGAAAAAAAAGAGTTGGGGAAAAAAATGTCCACTGTCATCCTCAAGAG TCATAACCAATGATGGCCATGCAACATTGCACATTTATTGAGCCAGCATG ACACAGCAGGAAAATGGCTTGCTTAATTCTTCTGACGTTTTTCATCATGT TTTCTACAGTGTCTGCAAGAATGGCAGGTTTTCCTGCACAGCAGAACAGT GTGAAGGTATTGTATGATTTTCTCTGCTGTTATACTTATTGATATCTTCC ATCTGCCACTTCAAAAACAAGATTTTGCAATGACACCCCAAAAGACAATA TGATAGTGCGTCCAACACAGAAGTGTGCATTTGTGCGCATGTGTGAGTTT GATATCACCCAATACTCTGTTAACATGTGAAATTAAGTAAATATGATAAA CTTCTTCCTAAAGCTTACTTAATGGCCATAAGTTTTAAAAGTAGTTAGCA CTTACCCGTTTTGTGATATTATTTTTTTTATTTGCAAGTTCATGCCGAAA GGCTAATTACAAATACGTGGACTTGGGAAACATGCCGCATTCCCGTTGTT GCTTACTGATAGCATGAAGTACTCGCCAGACGATGAACACTGCGCTACCA ACAAAAACTACAAAGAACTGGCTTTCAATGAATCAAATGAAAAAAGATTA TACGATGTCACATTTCCTATACATAGCCGAATACTATATTACATAGTGAT AGCCACAAAAATCTAAAGCCAAAACTAAGCAGAACTTATGATTTGCACCT TATTTCTCGGACTATTTTGCTGTACGGTCAGATTTAATTCCAATCCAGAG CCTCAAGAGATACTGAGAAAGTAACCAATAACCTCTGACCCTTTACCCAC AGTTCCAGGTGGCTGGTGTTATTGGGGTGCGTGGTCTATGACGAGCTGTC AGGGCTCGTGTGACTCGATGCAGAACAGGCAGCGTGTGTGTGCCTGTCCC GCGCCCACCTCACAGGAGGGGATGTGTGCAGACATCCACAGTCTGGAGGA TGGTTATGGGGTTCAACAGGAACAGGCACCTTGTGAGCCAT

Coding sequence (CDS) from alignment at Sc0000038:1597547..1599837+

>transcript:BL97309_cuf2 ID=transcript:BL97309_cuf2|Name=transcript:BL97309_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2604bp|location=Sequence derived from alignment at Sc0000038:1597547..1599837+ (Branchiostoma lanceolatum)
GACCACGGTAACTGGGGCGCCTGGGCATTGTGGACCACCTGCTCTGCCAC
CTGCGGCACCGGCTTCACGGCACGCCAGCGGGAATGTAACAACCCAGCGC
CGTCCAACGGCGGGAACTTCTGTGAGGGCTCCGCCACAGAAGGGGTGCAG
TGTAACATGGGGAGCTGTAATGCCCATTTGTGTGAGAATATCACGGGTTC
TGTGTACGATGAATGCGGCCCTGCCTGTCCCCGATCTTGCGAGGATGTCT
CCGCCTGTGTGTGGTCGTGCCAGCCGGGCTGCTACTGTCCCAGCGGGCTG
GTTCTGAACGAGAACCGGACAGCCTGCGTGGACACGTCGGCCTGCAGCTG
TCTGGACCTGGAGACCGACACCAGACATCCACCAGACACTGTCATCACTA
AGGACTGCAACCAATGTGTCTGCAAGAATGGCAGGTTTTCCTGCACAGCA
GAACAGTGTGAAGTTCCAGGTGGCTGGTGTTATTGGGGTGCGTGGTCTAT
GACGAGCTGTCAGGGCTCGTGTGACTCGATGCAGAACAGGCAGCGTGTGT
GTGCCTGTCCCGCGCCCACCTCACAGGAGGGGATGTGTGCAGACATCCAC
AGTCTGGAGGATGGTTATGGGGTTCAACAGGAACAGGCACCTTGTGAGCC
AGACCACGGTAACTGGGGCGCCTGGGCATTGTGGACCACCTGCTCTGCCA
CCTGCGGCACCGGCTTCACGGCACGCCAGCGGGAATGTAACAACCCAGCG
CCGTCCAACGGCGGGAACTTCTGTGAGGGCTCCGCCACAGAAGGGGTGCA
GTGTAACATGGGGAGCTGTAATGCCCATTTGTGTGAGAATATCACGGGTT
CTGTGTACGATGAATGCGGCCCTGCCTGTCCCCGATCTTGCGAGGATGTC
TCCGCCTGTGTGTGGTCGTGCCAGCCGGGCTGCTACTGTCCCAGCGGGCT
GGTTCTGAACGAGAACCGGACAGCCTGCGTGGACACGTCGGCCTGCAGCT
GTCTGGACCTGGAGACCGACACCAGACATCCACCAGACACTGTCATCACT
AAGGACTGCAACCAATGTGTCTGCAAGAATGGCAGGTTTTCCTGCACAGC
AGAACAGTGTGAAGTTCCAGGTGGCTGGTGTTATTGGGGTGCGTGGTCTA
TGACGAGCTGTCAGGGCTCGTGTGACTCGATGCAGAACAGGCAGCGTGTG
TGTGCCTGTCCCGCGCCCACCTCACAGGAGGGGATGTGTGCAGACATCCA
CAGTCTGGAGGATGGTTATGGGGTTCAACAGGAACAGGCACCTTGTGAGC
CAGACCACGGTAACTGGGGCGCCTGGGCATTGTGGACCACCTGCTCTGCC
ACCTGCGGCACCGGCTTCACGGCACGCCAGCGGGAATGTAACAACCCAGC
GCCGTCCAACGGCGGGAACTTCTGTGAGGGCTCCGCCACAGAAGGGGTGC
AGTGTAACATGGGGAGCTGTAATGCCCATTTGTGTGAGAATATCACGGGT
TCTGTGTACGATGAATGCGGCCCTGCCTGTCCCCGATCTTGCGAGGATGT
CTCCGCCTGTGTGTGGTCGTGCCAGCCGGGCTGCTACTGTCCCAGCGGGC
TGGTTCTGAACGAGAACCGGACAGCCTGCGTGGACACGTCGGCCTGCAGC
TGTCTGGACCTGGAGACCGACACCAGACATCCACCAGACACTGTCATCAC
TAAGGACTGCAACCAATGTGTCTGCAAGAATGGCAGGTTTTCCTGCACAG
CAGAACAGTGTGAAGTTCCAGGTGGCTGGTGTTATTGGGGTGCGTGGTCT
ATGACGAGCTGTCAGGGCTCGTGTGACTCGATGCAGAACAGGCAGCGTGT
GTGTGCCTGTCCCGCGCCCACCTCACAGGAGGGGATGTGTGCAGACATCC
ACAGTCTGGAGGATGGTTATGGGGTTCAACAGGAACAGGCACCTTGTGAG
CCAGACCACGGTAACTGGGGCGCCTGGGCATTGTGGACCACCTGCTCTGC
CACCTGCGGCACCGGCTTCACGGCACGCCAGCGGGAATGTAACAACCCAG
CGCCGTCCAACGGCGGGAACTTCTGTGAGGGCTCCGCCACAGAAGGGGTG
CAGTGTAACATGGGGAGCTGTAATGCCCATTTGTGTGAGAATATCACGGG
TTCTGTGTACGATGAATGCGGCCCTGCCTGTCCCCGATCTTGCGAGGATG
TCTCCGCCTGTGTGTGGTCGTGCCAGCCGGGCTGCTACTGTCCCAGCGGG
CTGGTTCTGAACGAGAACCGGACAGCCTGCGTGGACACGTCGGCCTGCAG
CTGTCTGGACCTGGAGACCGACACCAGACATCCACCAGACACTGTCATCA
CTAAGGACTGCAACCAATGTGTCTGCAAGAATGGCAGGTTTTCCTGCACA
GCAGAACAGTGTGAAGTTCCAGGTGGCTGGTGTTATTGGGGTGCGTGGTC
TATGACGAGCTGTCAGGGCTCGTGTGACTCGATGCAGAACAGGCAGCGTG
TGTGTGCCTGTCCCGCGCCCACCTCACAGGAGGGGATGTGTGCAGACATC
CACAGTCTGGAGGATGGTTATGGGGTTCAACAGGAACAGGCACCTTGTGA
GCCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97309gene:BL97309Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97309_cuf2transcript:BL97309_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97309_cuf2-E1BL97309_cuf2-E1-1564476830-198455Branchiostoma lanceolatumexon
BL97309_cuf2-E2BL97309_cuf2-E2-1564476830-198457Branchiostoma lanceolatumexon
BL97309_cuf2-E3BL97309_cuf2-E3-1564476830-198459Branchiostoma lanceolatumexon
BL97309_cuf2-E4BL97309_cuf2-E4-1564476830-198462Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000038genomeSc0000038:1597547..1599837 +
Properties
Property NameValue
Transcript idBL97309_cuf2
Biotypeprotein_coding