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transcript:BL97306_cuf7 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97306_cuf7
Unique Nametranscript:BL97306_cuf7
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97306_cuf7

>transcript:BL97306_cuf7-protein ID=transcript:BL97306_cuf7-protein|Name=transcript:BL97306_cuf7|organism=Branchiostoma lanceolatum|type=polypeptide|length=134bp
MSRSTQSWFPVLDCLLAMFVSIAAQSSGCSFHEDIHGRVQPVSPVVLVGS
TVILNCTIHPDVDGITARGVFWRHDTETIPAEGYRVLSDTVSQLVIENVS
PDSAGRYECFVPEPTNRDCGSLVGGGELEVGCKY
Run BLAST on NCBI

mRNA from alignment at Sc0000379:198014..200535-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97306_cuf7 ID=transcript:BL97306_cuf7|Name=transcript:BL97306_cuf7|organism=Branchiostoma lanceolatum|type=mRNA|length=2522bp|location=Sequence derived from alignment at Sc0000379:198014..200535- (Branchiostoma lanceolatum)
CACTTCCCAGAAGCCGGCCCCCTGTGCCTCACTTCCGCCGAGCTTCCAGT TTCGCACAGCGTCAAACCTGATTAAACCTCCTTGGTCAAACGCAGCAAAC ATCACATAGCTCCACACGACTCTTGGCTGATCTCTTGTTCGATGTTTGTG TTCTACGAAGACTGGGGATCTTCAATATAATCGTGTACAAGGTAAGGCGT TTGTTTGTTTCCAAGGACCATTCAGGATCGTGGCGACCATTAATGCGGAA GTGGAAAAGTTGTGGGACTGTGGGCACAGTGCTGACACTGTAGTCTCTAC CAGACTTCACATGGCGCTAGGAGTTAGCTAAATATAAACAGATAACATGC CTGAGGAGTTAGGTCACAAACTGTACTCCTATATGGCATTTATCTGTCTA TTTCACCAACGTATACTATTTTTCAGCGATCTATGGAGCTAGTCCCTGCA GGTATTGAGCTACTCAGACTACTGTGTCACTGTAACATCGCGAGTCCGGG ACATAATAGTAGTAACTATAAGTATCGGCAATGTAGATTGGTCTGTAGTT TCGCAAGTTGTTGGACTTTACATAAACGTTTTTTTAGAAGGTTCAAAATT TTGAGAGATGGACTCGGGAGAGTCAATAAATTATCAGAATATTTTTCTTC ATTCTTTCAGTCCAGTTTATTTACTCGCAATCCCTGTTCAGATTTATGAT GTCTTGTTTTTCTTTGTACAATATGTCGTTTTACAGCCGATTATCATAGC AGCCTGTGTACAGAAATGCCCCCATAGCTCAAAACCTGACGTCCTTTATC ACAGTTAAATGTGCACATGTTGTCAGGCCCTCCCTTCAAGTTGTAAATGT AATTTGATCCCGACCACGAGAGCTGCTCTGTCCATGAAAGTTGCTCGATG TTTACGTTATTGGTAAATAGGTAATGCGATGTATCGTTCTTTAGAAATGT TCAATACTATCAAATTAAGGCTGGTTTAACCAGAATTGTTTTACATAACC CTAGCAATCGTTGAATGAAATGAACCTTCACAGTGATGACAATGTAGTAA GTAAGGCTGTGTTTTAATCCATAGTTACCAATAATGTTACCATGAATGAA AGGTAATACTGGCCCATTAATTCTACCGAGATTGCACTGTGTTATAGTCA AACCATTGTACAGGTATTAAAGAAAGATTTACAGAGAACCCTAAACATAC AGGCGGAAGCCCCTAGGGAATATTACTACAGGGCTGAAATAACCGGGGTC ATTGACCCCGAGTTGTGTCGGTCGCGTCACTGAGACTAGCACATTTCCTG TGTGGATTTGCAATATTTCCTTTGGTGCTAATTAGGCGGGGAGGGGGGCA CAGGATTCTACAGTTCACGAAGGAAACTGCTCCACATCAACTGTTTCCAG ATATATAAACACAGAAAACACAAAAATTCTGTTCTGTTTTTGTCATCTCT GTCTTCTGATACTCGGAATACTCCTGACACACATTTCAATATATTAAGTC GATGTCTCTTTAATCTATTTTTACTTCCAAGGTCCAGCACAGTGCCAAGA AGTGGGGCTGTTCACTCCAAGAGTTTCAGCTGGCTGACAAGAATGTCAAG AAGCACACAATCATGGTTCCCTGTACTCGACTGCCTCCTAGCGATGTTCG TCAGCATTGCAGCACAGTCCAGTGGTTGCTCCTTTCATGGTCAGTGTTGG TTATTTACTGTTAATACTTCTGTTTGGTGTTTCATTTGTACCTCACCACC GCCGGATATTCTTAAAGGTGATATTTCCACCTACTTAAAACTCCAAACAT GAATGATCTGAAATGAAGAAGCTTGCCTATGCCTTACAGAATAGGAGCAT GGAGACAATGCTATAATAGTGGTGTATAAGATGTCCTGTACTTAACCCAC AGAAGACATACACGGTAGAGTGCAGCCTGTGAGTCCGGTAGTACTTGTCG GGTCCACGGTCATCCTCAACTGCACGATACATCCCGATGTCGACGGCATC ACGGCACGCGGGGTGTTCTGGAGACACGACACTGAGACGATACCAGCCGA AGGCTACCGTGTTCTGAGCGACACAGTCAGTCAGCTGGTTATTGAGAATG TCTCGCCGGACTCAGCAGGGCGCTACGAGTGTTTTGTCCCCGAGCCGACC AATCGAGACTGTGGGTCATTAGTTGGCGGGGGGGAACTGGAGGTCGGATG TAAGTATTGATATACAGAGTTAATGTCAACTCCCAGGGTCTGATATCAAG AACATTAACATTAGCCTGACTAAATCATGCTTCTAACATCCCTTCCACTC GTCAGGCCACTAGAAACTTGATAGACTCCAAGTCAGGAGACTCCCAGGAA CATCTCACTCCTGTTGAATTGTTAATATGCACATGTGCTAAGATGGACCA GGCATGGGAAAAGGAGGCCTGGAAGACCCGCAGCAACATACATTGACACC CTGAAGAAAGACACTGGCCTTGAAGTTGATAGTCTGCTCCAAGCGATGAG GGATAGAACCACATGGACTGCC

Coding sequence (CDS) from alignment at Sc0000379:198014..200535-

>transcript:BL97306_cuf7 ID=transcript:BL97306_cuf7|Name=transcript:BL97306_cuf7|organism=Branchiostoma lanceolatum|type=CDS|length=810bp|location=Sequence derived from alignment at Sc0000379:198014..200535- (Branchiostoma lanceolatum)
ATGTCAAGAAGCACACAATCATGGTTCCCTGTACTCGACTGCCTCCTAGC
GATGTTCGTCAGCATTGCAGCACAGTCCAGTGGTTGCTCCTTTCATGAAG
ACATACACGGTAGAGTGCAGCCTGTGAGTCCGGTAGTACTTGTCGGGTCC
ACGGTCATCCTCAACTGCACGATACATCCCGATGTCGACGGCATCACGGC
ACGCGGGGTGTTCTGGAGACACGACACTGAGACGATACCAGCCGAAGGCT
ACCGTGTTCTGAGCGACACAGTCAGTCAGCTGGTTATTGAGAATGTCTCG
CCGGACTCAGCAGGGCGCTACGAGTGTTTTGTCCCCGAGCCGACCAATCG
AGACTGTGGGTCATTAGTTGGCGGGGGGGAACTGGAGGTCGGATGTAAGT
ATTGAATGTCAAGAAGCACACAATCATGGTTCCCTGTACTCGACTGCCTC
CTAGCGATGTTCGTCAGCATTGCAGCACAGTCCAGTGGTTGCTCCTTTCA
TGAAGACATACACGGTAGAGTGCAGCCTGTGAGTCCGGTAGTACTTGTCG
GGTCCACGGTCATCCTCAACTGCACGATACATCCCGATGTCGACGGCATC
ACGGCACGCGGGGTGTTCTGGAGACACGACACTGAGACGATACCAGCCGA
AGGCTACCGTGTTCTGAGCGACACAGTCAGTCAGCTGGTTATTGAGAATG
TCTCGCCGGACTCAGCAGGGCGCTACGAGTGTTTTGTCCCCGAGCCGACC
AATCGAGACTGTGGGTCATTAGTTGGCGGGGGGGAACTGGAGGTCGGATG
TAAGTATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97306gene:BL97306Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97306_cuf7transcript:BL97306_cuf7-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97306_cuf7-E1BL97306_cuf7-E1-1564476830-452799Branchiostoma lanceolatumexon
BL97306_cuf7-E2BL97306_cuf7-E2-1564476830-452797Branchiostoma lanceolatumexon
BL97306_cuf7-E3BL97306_cuf7-E3-1564476830-452794Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000379genomeSc0000379:198014..200535 -
Properties
Property NameValue
Transcript idBL97306_cuf7
Biotypeprotein_coding