transcript:BL97299_cuf7 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97299_cuf7
Unique Nametranscript:BL97299_cuf7
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97299_cuf7

>transcript:BL97299_cuf7-protein ID=transcript:BL97299_cuf7-protein|Name=transcript:BL97299_cuf7|organism=Branchiostoma lanceolatum|type=polypeptide|length=296bp
MAAGGDDRVQYYRYKGIPLPSHLVPEDMDAIQDFAVRDDDVFIVTYPKSG
TAWLQRIVSLLRFGGDVSKTDMKEQDKLVPYFEQKCGDSATFRELPEAPS
PRLLKSHLNFSHAPVQLAQGKGKVIYVARNPKDLAVSYYYFHFMVTTLKN
PTSWEQFLQDFVNGEVSRGAWHDHVLGWWEQKDSPNVLFLRYEDLQKNTR
KQVGKVSEFLQWPVTPEVIGKVVEQSKFQKMATNPATNKVEGKEAKAGIF
DSSKGTFFRKGTVGDWKSHFSDEQSQWFDTFYQEKLGPTGLQFDFE
Run BLAST on NCBI

mRNA from alignment at Sc0000245:343455..347380-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97299_cuf7 ID=transcript:BL97299_cuf7|Name=transcript:BL97299_cuf7|organism=Branchiostoma lanceolatum|type=mRNA|length=3926bp|location=Sequence derived from alignment at Sc0000245:343455..347380- (Branchiostoma lanceolatum)
GTTCATTCACCAATAGGTCCTATAGCATGTACTATGTTATGTACGTGTGT CTTTCTTGATTTATGATACAATAAAAACCCTCAATTTCTTGCCCCAACCA TTTTTTAAGATATGTGCACTAGTCCTCAGATTTCAAACCCGCCCCTCTAC CACCCCTCAGAATGGTACAGCCCTGCCCGAGTGGCACCTCATGGTAGTCA TGTGAGTTCCGGGTTCACTCGCACTCAACATGGCGGCCGGTGGGGACGAT CGTGTCCAATATTACAGGTACAAGGGGATTCCTCTCCCGAGTCACCTTGT ACCTGAAGACATGGACGCCATTCAAGACTTCGCCGTTCGAGACGATGACG TGTTTATTGTCACGTATCCCAAGTCAGGTGAGTTTCGTCTGAGCCAAAAC GCCACTGCTGAGGAATCAGTGGCAATGGGTCACGACAAGTTCTATCGGCA ACTCTTACATAACCCTGCTTTAACAATGCCATTGTGGTCTGTAATATTGT GTAGTGTATAAGCTATAGCGGTAGATTGAACTGTTAATGAGCGCAACTGG TGATGTAGTTGTTTAAGCATTTGCAACAAATCCACTATTTATTTATTTCA TCATTTCTAACAGGAGTAACAAAACTCGCAAACAAATACCCTGATGTTTA TTCTATTTATCTGTTTGGCTGTTCAGCACACACATCCTCTGTTGCCCAAC TAGCCTGTTGCTATTTCAAAGGTGAAGGGCTAGCCCTGCTGACAAAGACA AGACGTTACAATGGAATTTTTACATGGACAGTATAACGAGCTATAGCAAT ATTCGAAGTACATCATTCGTAAACGCTACTGTATATAAATCCGTACATTA AGGTTTCCTCCCTGGCTAAATTGGCTTTTTGACTTTCGATTGTTTTCTCA CAAATGAAAAGGACTGATGTAGTACTGAATATTGATTGGCTGGTCATGAA ATAATTCTAAATCTAATTTTTGGACCAAATTTTATTGCCTTAAAATGTTT TTTTTCTAAGAGCAAATACAGCACTTTGGTACATAACGCTGCAATGAAAC TATGTTTTCCATGTGCATAATGATCAAAGCTACAAACGTACGTTCGCACA AATACATATCTATGTCGTGTCTAAAGCTATTAAAAATGATTTTCTATAAT TAGGTAAAAACAGTTCTTTTTAATAACTACAGATGATAAGTAGATATCGA TTTGTGCGAACGTACGTTTGTAGCTTTGATCATTATGCGCATGGAAAATA TAGTTCTATTGCAGTGTTATGTACCAAACTGCTGTATTTTCTCTTAGAAA AAATCATATTTAAATTTGATGACGTCATCCATATGGTAAAAAAAGCAGAT TTAGAATTCTTTTACGACCAGCTGTCAATGTTCAGTACAACTACAGTTCA TTCTTAATCTGCTAATGAGAACAATGAAAATTCAAAAAGCCAATTTAGTC AGGGAGGAAACCTTAACCAGTTCATCAAATACTGCGCATATAGAGTAACG GTGCTTCATTTGGTGTTTTCGACCGAGTGGTGTGGGCAGTGACCCGGGTA TCGGAGATCACCCTCAAATAAACAGCTCGACGATTGTACACAGCTCTAGA ACGCGACTATTCATTGGTGCAGAACGAATTTGAATTACTGTATAACCACA GTCCGTCAGGAAATTTTCTGATTCATCATTTATGCAGGAACAGCCTGGCT ACAGCGCATCGTTTCTCTGTTGCGTTTTGGCGGCGACGTGTCGAAAACTG ACATGAAAGAACAAGACAAATTGGTGCCTTACTTTGAACAGAAGTGTGGA GACAGCGCCACCTTTCGGGAACTACCGGAAGCTCCATCACCAAGACTGTT AAAAAGTCATCTTAACTTCAGTCATGCTCCAGTACAACTTGCGCAGGGGA AAGGAAAAGTAAGTCACAGCCATTCTGTGAGAGTCCATGAGTATATATGT ATCTTTGTGTATGTGAGTATATCCGTGTGTAGTACATTTCTGTATGTATG TGTGTGTGTGTGTGTGTGTGTTTGTGCGTGTGCATTTGCACATGTGTGAC TGTGAAAGTGAGTGTGTGTGTCTCATGTGTGAGTACGGGTGCATACATTG CATATATGTGTGCATGTGTGTGCGACCGCATGTGTGTTGTGGGTTAGTGT ATATAACATGCATGTGTGCGCGTGTTTAATATAGCCTACGCACATGCGTG CGTATGTATGCGTGTCCGCGCGTGTGTGTATGACTGTTTATATGTGTGAA TGCACGTATGCGTTTGTATCTAACGTTTTAAGTCATACTCGTTTCTTTTT ATTATAATAATATACAAATTTACGTCTTTTGCAATGTTGTGACATCATAA CTTTTATTGCTATAATATACATACATACTGTAGGTCATCTACGTCGCCAG GAACCCAAAAGATCTTGCGGTGTCCTACTATTACTTCCACTTCATGGTTA CAACACTGAAGAACCCCACATCCTGGGAACAGTTCCTACAGGACTTCGTA AACGGCGAAGGTAGGGGTGCTTACGACACTTCTTCACATCATGCTATGTT TGCTAAGTAGGGTCATGTGACATAGCCGTAACCTGTCAATGCCTTCCGAC ATCCTTTCTAATATTTTGACGTACATAGGCCTCTCGAGCTTTGCTTTAAA GGCATACACTGGCGTATTTTTACGCGAACCATCATCATTGACACCGTTAG GTAATTTGAGGGGGGATGAAATATAATTCGCTTTGTTTGATTATTCTAGG TCATTAAAACATCTTAACTTGGACATTACTTTTACATTAAAACATTCCTT GACTTCACCAGTGAGCAGGGGAGCATGGCACGACCACGTGCTGGGCTGGT GGGAACAGAAAGACAGCCCAAACGTGTTATTCCTCAGGTACGAGGACCTA CAAAAAGTAAGTCTATTATCCTCTCCTTTTGTCTATCTAGACATAGCGTT ATCCCACTCAAAGCGTCTTTTTCTTTTGATCTATACTTGACTTATTCAAA GTTAGATGCATTATGTTTGCTATCCATGATAACAATTTGTACATGTGGTT TGGCAGAACACCCGGAAACAGGTGGGGAAAGTGTCGGAGTTCCTGCAGTG GCCCGTGACCCCGGAAGTGATTGGCAAGGTCGTTGAGCAGAGCAAATTCC AGAAAATGGCGACAAATCCAGCCACGAACAAGGTTGAAGGGAAGGAGGCC AAAGCGGGGATATTTGACTCCTCGAAAGGAACTTTCTTTAGAAAAGGTAT AGAACACGGTCCCTACATGTTGTATATTTCCACGCTGTCAAAATCTAATG CAACAAAAGAAAATTATGAAATTAAAGTCATCATCGACATTGGAGGATGA ATAAATACGTCAGTGGTTCTAACTGCACATGCGCAGCGAATTATAATGAG GGTAATATGTCAAAAGTGAAGGCCCCTGACTTGTTAAGAGTTCTTGTCTC CGCCGTGCTTTATATCTGTCCAGATTCCGTCGGTCGGTTCGAATAACAAC GAAAGAACCGCCTAATATCATTTATATTCGATTTACGATTTATCATTTTT TGCATTTGATTGGTATGTTTCGTTTCTTTATGTCTCTCTTAAATCTCAGC AGTCATGTTCTTCAAAACAGCTAGAAAATACTTCTGCTCTTCTACAGGTA CAGTTGGTGACTGGAAGTCTCACTTCAGTGACGAACAGAGCCAGTGGTTT GACACGTTCTACCAGGAAAAACTGGGACCAACTGGACTTCAGTTCGACTT TGAATGATAGAAATCACAAAGCATGTTACAGTGACTGCTAAATAAAACAC GATGCCCGGAGCAATATCGTCTCATTTTAACTTTATCATCAGTCTGTATA ATGTTTCATAATGATGTTCTGTCCTCTTCATCTTAAGAAGCGAAGAAGCA GTGTGTCCCCTGTAGCTATATCTAAT

Coding sequence (CDS) from alignment at Sc0000245:343455..347380-

>transcript:BL97299_cuf7 ID=transcript:BL97299_cuf7|Name=transcript:BL97299_cuf7|organism=Branchiostoma lanceolatum|type=CDS|length=5346bp|location=Sequence derived from alignment at Sc0000245:343455..347380- (Branchiostoma lanceolatum)
ATGGCGGCCGGTGGGGACGATCGTGTCCAATATTACAGGTACAAGGGGAT
TCCTCTCCCGAGTCACCTTGTACCTGAAGACATGGACGCCATTCAAGACT
TCGCCGTTCGAGACGATGACGTGTTTATTGTCACGTATCCCAAGTCAGGA
ACAGCCTGGCTACAGCGCATCGTTTCTCTGTTGCGTTTTGGCGGCGACGT
GTCGAAAACTGACATGAAAGAACAAGACAAATTGGTGCCTTACTTTGAAC
AGAAGTGTGGAGACAGCGCCACCTTTCGGGAACTACCGGAAGCTCCATCA
CCAAGACTGTTAAAAAGTCATCTTAACTTCAGTCATGCTCCAGTACAACT
TGCGCAGGGGAAAGGAAAAGTCATCTACGTCGCCAGGAACCCAAAAGATC
TTGCGGTGTCCTACTATTACTTCCACTTCATGGTTACAACACTGAAGAAC
CCCACATCCTGGGAACAGTTCCTACAGGACTTCGTAAACGGCGAAGTGAG
CAGGGGAGCATGGCACGACCACGTGCTGGGCTGGTGGGAACAGAAAGACA
GCCCAAACGTGTTATTCCTCAGGTACGAGGACCTACAAAAAAACACCCGG
AAACAGGTGGGGAAAGTGTCGGAGTTCCTGCAGTGGCCCGTGACCCCGGA
AGTGATTGGCAAGGTCGTTGAGCAGAGCAAATTCCAGAAAATGGCGACAA
ATCCAGCCACGAACAAGGTTGAAGGGAAGGAGGCCAAAGCGGGGATATTT
GACTCCTCGAAAGGAACTTTCTTTAGAAAAGGTACAGTTGGTGACTGGAA
GTCTCACTTCAGTGACGAACAGAGCCAGTGGTTTGACACGTTCTACCAGG
AAAAACTGGGACCAACTGGACTTCAGTTCGACTTTGAATGAATGGCGGCC
GGTGGGGACGATCGTGTCCAATATTACAGGTACAAGGGGATTCCTCTCCC
GAGTCACCTTGTACCTGAAGACATGGACGCCATTCAAGACTTCGCCGTTC
GAGACGATGACGTGTTTATTGTCACGTATCCCAAGTCAGGAACAGCCTGG
CTACAGCGCATCGTTTCTCTGTTGCGTTTTGGCGGCGACGTGTCGAAAAC
TGACATGAAAGAACAAGACAAATTGGTGCCTTACTTTGAACAGAAGTGTG
GAGACAGCGCCACCTTTCGGGAACTACCGGAAGCTCCATCACCAAGACTG
TTAAAAAGTCATCTTAACTTCAGTCATGCTCCAGTACAACTTGCGCAGGG
GAAAGGAAAAGTCATCTACGTCGCCAGGAACCCAAAAGATCTTGCGGTGT
CCTACTATTACTTCCACTTCATGGTTACAACACTGAAGAACCCCACATCC
TGGGAACAGTTCCTACAGGACTTCGTAAACGGCGAAGTGAGCAGGGGAGC
ATGGCACGACCACGTGCTGGGCTGGTGGGAACAGAAAGACAGCCCAAACG
TGTTATTCCTCAGGTACGAGGACCTACAAAAAAACACCCGGAAACAGGTG
GGGAAAGTGTCGGAGTTCCTGCAGTGGCCCGTGACCCCGGAAGTGATTGG
CAAGGTCGTTGAGCAGAGCAAATTCCAGAAAATGGCGACAAATCCAGCCA
CGAACAAGGTTGAAGGGAAGGAGGCCAAAGCGGGGATATTTGACTCCTCG
AAAGGAACTTTCTTTAGAAAAGGTACAGTTGGTGACTGGAAGTCTCACTT
CAGTGACGAACAGAGCCAGTGGTTTGACACGTTCTACCAGGAAAAACTGG
GACCAACTGGACTTCAGTTCGACTTTGAATGAATGGCGGCCGGTGGGGAC
GATCGTGTCCAATATTACAGGTACAAGGGGATTCCTCTCCCGAGTCACCT
TGTACCTGAAGACATGGACGCCATTCAAGACTTCGCCGTTCGAGACGATG
ACGTGTTTATTGTCACGTATCCCAAGTCAGGAACAGCCTGGCTACAGCGC
ATCGTTTCTCTGTTGCGTTTTGGCGGCGACGTGTCGAAAACTGACATGAA
AGAACAAGACAAATTGGTGCCTTACTTTGAACAGAAGTGTGGAGACAGCG
CCACCTTTCGGGAACTACCGGAAGCTCCATCACCAAGACTGTTAAAAAGT
CATCTTAACTTCAGTCATGCTCCAGTACAACTTGCGCAGGGGAAAGGAAA
AGTCATCTACGTCGCCAGGAACCCAAAAGATCTTGCGGTGTCCTACTATT
ACTTCCACTTCATGGTTACAACACTGAAGAACCCCACATCCTGGGAACAG
TTCCTACAGGACTTCGTAAACGGCGAAGTGAGCAGGGGAGCATGGCACGA
CCACGTGCTGGGCTGGTGGGAACAGAAAGACAGCCCAAACGTGTTATTCC
TCAGGTACGAGGACCTACAAAAAAACACCCGGAAACAGGTGGGGAAAGTG
TCGGAGTTCCTGCAGTGGCCCGTGACCCCGGAAGTGATTGGCAAGGTCGT
TGAGCAGAGCAAATTCCAGAAAATGGCGACAAATCCAGCCACGAACAAGG
TTGAAGGGAAGGAGGCCAAAGCGGGGATATTTGACTCCTCGAAAGGAACT
TTCTTTAGAAAAGGTACAGTTGGTGACTGGAAGTCTCACTTCAGTGACGA
ACAGAGCCAGTGGTTTGACACGTTCTACCAGGAAAAACTGGGACCAACTG
GACTTCAGTTCGACTTTGAATGAATGGCGGCCGGTGGGGACGATCGTGTC
CAATATTACAGGTACAAGGGGATTCCTCTCCCGAGTCACCTTGTACCTGA
AGACATGGACGCCATTCAAGACTTCGCCGTTCGAGACGATGACGTGTTTA
TTGTCACGTATCCCAAGTCAGGAACAGCCTGGCTACAGCGCATCGTTTCT
CTGTTGCGTTTTGGCGGCGACGTGTCGAAAACTGACATGAAAGAACAAGA
CAAATTGGTGCCTTACTTTGAACAGAAGTGTGGAGACAGCGCCACCTTTC
GGGAACTACCGGAAGCTCCATCACCAAGACTGTTAAAAAGTCATCTTAAC
TTCAGTCATGCTCCAGTACAACTTGCGCAGGGGAAAGGAAAAGTCATCTA
CGTCGCCAGGAACCCAAAAGATCTTGCGGTGTCCTACTATTACTTCCACT
TCATGGTTACAACACTGAAGAACCCCACATCCTGGGAACAGTTCCTACAG
GACTTCGTAAACGGCGAAGTGAGCAGGGGAGCATGGCACGACCACGTGCT
GGGCTGGTGGGAACAGAAAGACAGCCCAAACGTGTTATTCCTCAGGTACG
AGGACCTACAAAAAAACACCCGGAAACAGGTGGGGAAAGTGTCGGAGTTC
CTGCAGTGGCCCGTGACCCCGGAAGTGATTGGCAAGGTCGTTGAGCAGAG
CAAATTCCAGAAAATGGCGACAAATCCAGCCACGAACAAGGTTGAAGGGA
AGGAGGCCAAAGCGGGGATATTTGACTCCTCGAAAGGAACTTTCTTTAGA
AAAGGTACAGTTGGTGACTGGAAGTCTCACTTCAGTGACGAACAGAGCCA
GTGGTTTGACACGTTCTACCAGGAAAAACTGGGACCAACTGGACTTCAGT
TCGACTTTGAATGAATGGCGGCCGGTGGGGACGATCGTGTCCAATATTAC
AGGTACAAGGGGATTCCTCTCCCGAGTCACCTTGTACCTGAAGACATGGA
CGCCATTCAAGACTTCGCCGTTCGAGACGATGACGTGTTTATTGTCACGT
ATCCCAAGTCAGGAACAGCCTGGCTACAGCGCATCGTTTCTCTGTTGCGT
TTTGGCGGCGACGTGTCGAAAACTGACATGAAAGAACAAGACAAATTGGT
GCCTTACTTTGAACAGAAGTGTGGAGACAGCGCCACCTTTCGGGAACTAC
CGGAAGCTCCATCACCAAGACTGTTAAAAAGTCATCTTAACTTCAGTCAT
GCTCCAGTACAACTTGCGCAGGGGAAAGGAAAAGTCATCTACGTCGCCAG
GAACCCAAAAGATCTTGCGGTGTCCTACTATTACTTCCACTTCATGGTTA
CAACACTGAAGAACCCCACATCCTGGGAACAGTTCCTACAGGACTTCGTA
AACGGCGAAGTGAGCAGGGGAGCATGGCACGACCACGTGCTGGGCTGGTG
GGAACAGAAAGACAGCCCAAACGTGTTATTCCTCAGGTACGAGGACCTAC
AAAAAAACACCCGGAAACAGGTGGGGAAAGTGTCGGAGTTCCTGCAGTGG
CCCGTGACCCCGGAAGTGATTGGCAAGGTCGTTGAGCAGAGCAAATTCCA
GAAAATGGCGACAAATCCAGCCACGAACAAGGTTGAAGGGAAGGAGGCCA
AAGCGGGGATATTTGACTCCTCGAAAGGAACTTTCTTTAGAAAAGGTACA
GTTGGTGACTGGAAGTCTCACTTCAGTGACGAACAGAGCCAGTGGTTTGA
CACGTTCTACCAGGAAAAACTGGGACCAACTGGACTTCAGTTCGACTTTG
AATGAATGGCGGCCGGTGGGGACGATCGTGTCCAATATTACAGGTACAAG
GGGATTCCTCTCCCGAGTCACCTTGTACCTGAAGACATGGACGCCATTCA
AGACTTCGCCGTTCGAGACGATGACGTGTTTATTGTCACGTATCCCAAGT
CAGGAACAGCCTGGCTACAGCGCATCGTTTCTCTGTTGCGTTTTGGCGGC
GACGTGTCGAAAACTGACATGAAAGAACAAGACAAATTGGTGCCTTACTT
TGAACAGAAGTGTGGAGACAGCGCCACCTTTCGGGAACTACCGGAAGCTC
CATCACCAAGACTGTTAAAAAGTCATCTTAACTTCAGTCATGCTCCAGTA
CAACTTGCGCAGGGGAAAGGAAAAGTCATCTACGTCGCCAGGAACCCAAA
AGATCTTGCGGTGTCCTACTATTACTTCCACTTCATGGTTACAACACTGA
AGAACCCCACATCCTGGGAACAGTTCCTACAGGACTTCGTAAACGGCGAA
GTGAGCAGGGGAGCATGGCACGACCACGTGCTGGGCTGGTGGGAACAGAA
AGACAGCCCAAACGTGTTATTCCTCAGGTACGAGGACCTACAAAAAAACA
CCCGGAAACAGGTGGGGAAAGTGTCGGAGTTCCTGCAGTGGCCCGTGACC
CCGGAAGTGATTGGCAAGGTCGTTGAGCAGAGCAAATTCCAGAAAATGGC
GACAAATCCAGCCACGAACAAGGTTGAAGGGAAGGAGGCCAAAGCGGGGA
TATTTGACTCCTCGAAAGGAACTTTCTTTAGAAAAGGTACAGTTGGTGAC
TGGAAGTCTCACTTCAGTGACGAACAGAGCCAGTGGTTTGACACGTTCTA
CCAGGAAAAACTGGGACCAACTGGACTTCAGTTCGACTTTGAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97299gene:BL97299Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97299_cuf7transcript:BL97299_cuf7-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97299_cuf7-E1BL97299_cuf7-E1-1564476830-406860Branchiostoma lanceolatumexon
BL97299_cuf7-E2BL97299_cuf7-E2-1564476830-406857Branchiostoma lanceolatumexon
BL97299_cuf7-E3BL97299_cuf7-E3-1564476830-406855Branchiostoma lanceolatumexon
BL97299_cuf7-E4BL97299_cuf7-E4-1564476830-406853Branchiostoma lanceolatumexon
BL97299_cuf7-E5BL97299_cuf7-E5-1564476830-406851Branchiostoma lanceolatumexon
BL97299_cuf7-E6BL97299_cuf7-E6-1564476830-406849Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000245genomeSc0000245:343455..347380 -
Properties
Property NameValue
Transcript idBL97299_cuf7
Biotypeprotein_coding