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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97299_cuf7 >transcript:BL97299_cuf7-protein ID=transcript:BL97299_cuf7-protein|Name=transcript:BL97299_cuf7|organism=Branchiostoma lanceolatum|type=polypeptide|length=296bp
MAAGGDDRVQYYRYKGIPLPSHLVPEDMDAIQDFAVRDDDVFIVTYPKSG
TAWLQRIVSLLRFGGDVSKTDMKEQDKLVPYFEQKCGDSATFRELPEAPS
PRLLKSHLNFSHAPVQLAQGKGKVIYVARNPKDLAVSYYYFHFMVTTLKN
PTSWEQFLQDFVNGEVSRGAWHDHVLGWWEQKDSPNVLFLRYEDLQKNTR
KQVGKVSEFLQWPVTPEVIGKVVEQSKFQKMATNPATNKVEGKEAKAGIF
DSSKGTFFRKGTVGDWKSHFSDEQSQWFDTFYQEKLGPTGLQFDFE Run BLAST on NCBI mRNA from alignment at Sc0000245:343455..347380- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97299_cuf7 ID=transcript:BL97299_cuf7|Name=transcript:BL97299_cuf7|organism=Branchiostoma lanceolatum|type=mRNA|length=3926bp|location=Sequence derived from alignment at Sc0000245:343455..347380- (Branchiostoma lanceolatum)
GTTCATTCACCAATAGGTCCTATAGCATGTACTATGTTATGTACGTGTGT
CTTTCTTGATTTATGATACAATAAAAACCCTCAATTTCTTGCCCCAACCA
TTTTTTAAGATATGTGCACTAGTCCTCAGATTTCAAACCCGCCCCTCTAC
CACCCCTCAGAATGGTACAGCCCTGCCCGAGTGGCACCTCATGGTAGTCA
TGTGAGTTCCGGGTTCACTCGCACTCAACATGGCGGCCGGTGGGGACGAT
CGTGTCCAATATTACAGGTACAAGGGGATTCCTCTCCCGAGTCACCTTGT
ACCTGAAGACATGGACGCCATTCAAGACTTCGCCGTTCGAGACGATGACG
TGTTTATTGTCACGTATCCCAAGTCAGGTGAGTTTCGTCTGAGCCAAAAC
GCCACTGCTGAGGAATCAGTGGCAATGGGTCACGACAAGTTCTATCGGCA
ACTCTTACATAACCCTGCTTTAACAATGCCATTGTGGTCTGTAATATTGT
GTAGTGTATAAGCTATAGCGGTAGATTGAACTGTTAATGAGCGCAACTGG
TGATGTAGTTGTTTAAGCATTTGCAACAAATCCACTATTTATTTATTTCA
TCATTTCTAACAGGAGTAACAAAACTCGCAAACAAATACCCTGATGTTTA
TTCTATTTATCTGTTTGGCTGTTCAGCACACACATCCTCTGTTGCCCAAC
TAGCCTGTTGCTATTTCAAAGGTGAAGGGCTAGCCCTGCTGACAAAGACA
AGACGTTACAATGGAATTTTTACATGGACAGTATAACGAGCTATAGCAAT
ATTCGAAGTACATCATTCGTAAACGCTACTGTATATAAATCCGTACATTA
AGGTTTCCTCCCTGGCTAAATTGGCTTTTTGACTTTCGATTGTTTTCTCA
CAAATGAAAAGGACTGATGTAGTACTGAATATTGATTGGCTGGTCATGAA
ATAATTCTAAATCTAATTTTTGGACCAAATTTTATTGCCTTAAAATGTTT
TTTTTCTAAGAGCAAATACAGCACTTTGGTACATAACGCTGCAATGAAAC
TATGTTTTCCATGTGCATAATGATCAAAGCTACAAACGTACGTTCGCACA
AATACATATCTATGTCGTGTCTAAAGCTATTAAAAATGATTTTCTATAAT
TAGGTAAAAACAGTTCTTTTTAATAACTACAGATGATAAGTAGATATCGA
TTTGTGCGAACGTACGTTTGTAGCTTTGATCATTATGCGCATGGAAAATA
TAGTTCTATTGCAGTGTTATGTACCAAACTGCTGTATTTTCTCTTAGAAA
AAATCATATTTAAATTTGATGACGTCATCCATATGGTAAAAAAAGCAGAT
TTAGAATTCTTTTACGACCAGCTGTCAATGTTCAGTACAACTACAGTTCA
TTCTTAATCTGCTAATGAGAACAATGAAAATTCAAAAAGCCAATTTAGTC
AGGGAGGAAACCTTAACCAGTTCATCAAATACTGCGCATATAGAGTAACG
GTGCTTCATTTGGTGTTTTCGACCGAGTGGTGTGGGCAGTGACCCGGGTA
TCGGAGATCACCCTCAAATAAACAGCTCGACGATTGTACACAGCTCTAGA
ACGCGACTATTCATTGGTGCAGAACGAATTTGAATTACTGTATAACCACA
GTCCGTCAGGAAATTTTCTGATTCATCATTTATGCAGGAACAGCCTGGCT
ACAGCGCATCGTTTCTCTGTTGCGTTTTGGCGGCGACGTGTCGAAAACTG
ACATGAAAGAACAAGACAAATTGGTGCCTTACTTTGAACAGAAGTGTGGA
GACAGCGCCACCTTTCGGGAACTACCGGAAGCTCCATCACCAAGACTGTT
AAAAAGTCATCTTAACTTCAGTCATGCTCCAGTACAACTTGCGCAGGGGA
AAGGAAAAGTAAGTCACAGCCATTCTGTGAGAGTCCATGAGTATATATGT
ATCTTTGTGTATGTGAGTATATCCGTGTGTAGTACATTTCTGTATGTATG
TGTGTGTGTGTGTGTGTGTGTTTGTGCGTGTGCATTTGCACATGTGTGAC
TGTGAAAGTGAGTGTGTGTGTCTCATGTGTGAGTACGGGTGCATACATTG
CATATATGTGTGCATGTGTGTGCGACCGCATGTGTGTTGTGGGTTAGTGT
ATATAACATGCATGTGTGCGCGTGTTTAATATAGCCTACGCACATGCGTG
CGTATGTATGCGTGTCCGCGCGTGTGTGTATGACTGTTTATATGTGTGAA
TGCACGTATGCGTTTGTATCTAACGTTTTAAGTCATACTCGTTTCTTTTT
ATTATAATAATATACAAATTTACGTCTTTTGCAATGTTGTGACATCATAA
CTTTTATTGCTATAATATACATACATACTGTAGGTCATCTACGTCGCCAG
GAACCCAAAAGATCTTGCGGTGTCCTACTATTACTTCCACTTCATGGTTA
CAACACTGAAGAACCCCACATCCTGGGAACAGTTCCTACAGGACTTCGTA
AACGGCGAAGGTAGGGGTGCTTACGACACTTCTTCACATCATGCTATGTT
TGCTAAGTAGGGTCATGTGACATAGCCGTAACCTGTCAATGCCTTCCGAC
ATCCTTTCTAATATTTTGACGTACATAGGCCTCTCGAGCTTTGCTTTAAA
GGCATACACTGGCGTATTTTTACGCGAACCATCATCATTGACACCGTTAG
GTAATTTGAGGGGGGATGAAATATAATTCGCTTTGTTTGATTATTCTAGG
TCATTAAAACATCTTAACTTGGACATTACTTTTACATTAAAACATTCCTT
GACTTCACCAGTGAGCAGGGGAGCATGGCACGACCACGTGCTGGGCTGGT
GGGAACAGAAAGACAGCCCAAACGTGTTATTCCTCAGGTACGAGGACCTA
CAAAAAGTAAGTCTATTATCCTCTCCTTTTGTCTATCTAGACATAGCGTT
ATCCCACTCAAAGCGTCTTTTTCTTTTGATCTATACTTGACTTATTCAAA
GTTAGATGCATTATGTTTGCTATCCATGATAACAATTTGTACATGTGGTT
TGGCAGAACACCCGGAAACAGGTGGGGAAAGTGTCGGAGTTCCTGCAGTG
GCCCGTGACCCCGGAAGTGATTGGCAAGGTCGTTGAGCAGAGCAAATTCC
AGAAAATGGCGACAAATCCAGCCACGAACAAGGTTGAAGGGAAGGAGGCC
AAAGCGGGGATATTTGACTCCTCGAAAGGAACTTTCTTTAGAAAAGGTAT
AGAACACGGTCCCTACATGTTGTATATTTCCACGCTGTCAAAATCTAATG
CAACAAAAGAAAATTATGAAATTAAAGTCATCATCGACATTGGAGGATGA
ATAAATACGTCAGTGGTTCTAACTGCACATGCGCAGCGAATTATAATGAG
GGTAATATGTCAAAAGTGAAGGCCCCTGACTTGTTAAGAGTTCTTGTCTC
CGCCGTGCTTTATATCTGTCCAGATTCCGTCGGTCGGTTCGAATAACAAC
GAAAGAACCGCCTAATATCATTTATATTCGATTTACGATTTATCATTTTT
TGCATTTGATTGGTATGTTTCGTTTCTTTATGTCTCTCTTAAATCTCAGC
AGTCATGTTCTTCAAAACAGCTAGAAAATACTTCTGCTCTTCTACAGGTA
CAGTTGGTGACTGGAAGTCTCACTTCAGTGACGAACAGAGCCAGTGGTTT
GACACGTTCTACCAGGAAAAACTGGGACCAACTGGACTTCAGTTCGACTT
TGAATGATAGAAATCACAAAGCATGTTACAGTGACTGCTAAATAAAACAC
GATGCCCGGAGCAATATCGTCTCATTTTAACTTTATCATCAGTCTGTATA
ATGTTTCATAATGATGTTCTGTCCTCTTCATCTTAAGAAGCGAAGAAGCA
GTGTGTCCCCTGTAGCTATATCTAAT Coding sequence (CDS) from alignment at Sc0000245:343455..347380- >transcript:BL97299_cuf7 ID=transcript:BL97299_cuf7|Name=transcript:BL97299_cuf7|organism=Branchiostoma lanceolatum|type=CDS|length=5346bp|location=Sequence derived from alignment at Sc0000245:343455..347380- (Branchiostoma lanceolatum)
ATGGCGGCCGGTGGGGACGATCGTGTCCAATATTACAGGTACAAGGGGAT
TCCTCTCCCGAGTCACCTTGTACCTGAAGACATGGACGCCATTCAAGACT
TCGCCGTTCGAGACGATGACGTGTTTATTGTCACGTATCCCAAGTCAGGA
ACAGCCTGGCTACAGCGCATCGTTTCTCTGTTGCGTTTTGGCGGCGACGT
GTCGAAAACTGACATGAAAGAACAAGACAAATTGGTGCCTTACTTTGAAC
AGAAGTGTGGAGACAGCGCCACCTTTCGGGAACTACCGGAAGCTCCATCA
CCAAGACTGTTAAAAAGTCATCTTAACTTCAGTCATGCTCCAGTACAACT
TGCGCAGGGGAAAGGAAAAGTCATCTACGTCGCCAGGAACCCAAAAGATC
TTGCGGTGTCCTACTATTACTTCCACTTCATGGTTACAACACTGAAGAAC
CCCACATCCTGGGAACAGTTCCTACAGGACTTCGTAAACGGCGAAGTGAG
CAGGGGAGCATGGCACGACCACGTGCTGGGCTGGTGGGAACAGAAAGACA
GCCCAAACGTGTTATTCCTCAGGTACGAGGACCTACAAAAAAACACCCGG
AAACAGGTGGGGAAAGTGTCGGAGTTCCTGCAGTGGCCCGTGACCCCGGA
AGTGATTGGCAAGGTCGTTGAGCAGAGCAAATTCCAGAAAATGGCGACAA
ATCCAGCCACGAACAAGGTTGAAGGGAAGGAGGCCAAAGCGGGGATATTT
GACTCCTCGAAAGGAACTTTCTTTAGAAAAGGTACAGTTGGTGACTGGAA
GTCTCACTTCAGTGACGAACAGAGCCAGTGGTTTGACACGTTCTACCAGG
AAAAACTGGGACCAACTGGACTTCAGTTCGACTTTGAATGAATGGCGGCC
GGTGGGGACGATCGTGTCCAATATTACAGGTACAAGGGGATTCCTCTCCC
GAGTCACCTTGTACCTGAAGACATGGACGCCATTCAAGACTTCGCCGTTC
GAGACGATGACGTGTTTATTGTCACGTATCCCAAGTCAGGAACAGCCTGG
CTACAGCGCATCGTTTCTCTGTTGCGTTTTGGCGGCGACGTGTCGAAAAC
TGACATGAAAGAACAAGACAAATTGGTGCCTTACTTTGAACAGAAGTGTG
GAGACAGCGCCACCTTTCGGGAACTACCGGAAGCTCCATCACCAAGACTG
TTAAAAAGTCATCTTAACTTCAGTCATGCTCCAGTACAACTTGCGCAGGG
GAAAGGAAAAGTCATCTACGTCGCCAGGAACCCAAAAGATCTTGCGGTGT
CCTACTATTACTTCCACTTCATGGTTACAACACTGAAGAACCCCACATCC
TGGGAACAGTTCCTACAGGACTTCGTAAACGGCGAAGTGAGCAGGGGAGC
ATGGCACGACCACGTGCTGGGCTGGTGGGAACAGAAAGACAGCCCAAACG
TGTTATTCCTCAGGTACGAGGACCTACAAAAAAACACCCGGAAACAGGTG
GGGAAAGTGTCGGAGTTCCTGCAGTGGCCCGTGACCCCGGAAGTGATTGG
CAAGGTCGTTGAGCAGAGCAAATTCCAGAAAATGGCGACAAATCCAGCCA
CGAACAAGGTTGAAGGGAAGGAGGCCAAAGCGGGGATATTTGACTCCTCG
AAAGGAACTTTCTTTAGAAAAGGTACAGTTGGTGACTGGAAGTCTCACTT
CAGTGACGAACAGAGCCAGTGGTTTGACACGTTCTACCAGGAAAAACTGG
GACCAACTGGACTTCAGTTCGACTTTGAATGAATGGCGGCCGGTGGGGAC
GATCGTGTCCAATATTACAGGTACAAGGGGATTCCTCTCCCGAGTCACCT
TGTACCTGAAGACATGGACGCCATTCAAGACTTCGCCGTTCGAGACGATG
ACGTGTTTATTGTCACGTATCCCAAGTCAGGAACAGCCTGGCTACAGCGC
ATCGTTTCTCTGTTGCGTTTTGGCGGCGACGTGTCGAAAACTGACATGAA
AGAACAAGACAAATTGGTGCCTTACTTTGAACAGAAGTGTGGAGACAGCG
CCACCTTTCGGGAACTACCGGAAGCTCCATCACCAAGACTGTTAAAAAGT
CATCTTAACTTCAGTCATGCTCCAGTACAACTTGCGCAGGGGAAAGGAAA
AGTCATCTACGTCGCCAGGAACCCAAAAGATCTTGCGGTGTCCTACTATT
ACTTCCACTTCATGGTTACAACACTGAAGAACCCCACATCCTGGGAACAG
TTCCTACAGGACTTCGTAAACGGCGAAGTGAGCAGGGGAGCATGGCACGA
CCACGTGCTGGGCTGGTGGGAACAGAAAGACAGCCCAAACGTGTTATTCC
TCAGGTACGAGGACCTACAAAAAAACACCCGGAAACAGGTGGGGAAAGTG
TCGGAGTTCCTGCAGTGGCCCGTGACCCCGGAAGTGATTGGCAAGGTCGT
TGAGCAGAGCAAATTCCAGAAAATGGCGACAAATCCAGCCACGAACAAGG
TTGAAGGGAAGGAGGCCAAAGCGGGGATATTTGACTCCTCGAAAGGAACT
TTCTTTAGAAAAGGTACAGTTGGTGACTGGAAGTCTCACTTCAGTGACGA
ACAGAGCCAGTGGTTTGACACGTTCTACCAGGAAAAACTGGGACCAACTG
GACTTCAGTTCGACTTTGAATGAATGGCGGCCGGTGGGGACGATCGTGTC
CAATATTACAGGTACAAGGGGATTCCTCTCCCGAGTCACCTTGTACCTGA
AGACATGGACGCCATTCAAGACTTCGCCGTTCGAGACGATGACGTGTTTA
TTGTCACGTATCCCAAGTCAGGAACAGCCTGGCTACAGCGCATCGTTTCT
CTGTTGCGTTTTGGCGGCGACGTGTCGAAAACTGACATGAAAGAACAAGA
CAAATTGGTGCCTTACTTTGAACAGAAGTGTGGAGACAGCGCCACCTTTC
GGGAACTACCGGAAGCTCCATCACCAAGACTGTTAAAAAGTCATCTTAAC
TTCAGTCATGCTCCAGTACAACTTGCGCAGGGGAAAGGAAAAGTCATCTA
CGTCGCCAGGAACCCAAAAGATCTTGCGGTGTCCTACTATTACTTCCACT
TCATGGTTACAACACTGAAGAACCCCACATCCTGGGAACAGTTCCTACAG
GACTTCGTAAACGGCGAAGTGAGCAGGGGAGCATGGCACGACCACGTGCT
GGGCTGGTGGGAACAGAAAGACAGCCCAAACGTGTTATTCCTCAGGTACG
AGGACCTACAAAAAAACACCCGGAAACAGGTGGGGAAAGTGTCGGAGTTC
CTGCAGTGGCCCGTGACCCCGGAAGTGATTGGCAAGGTCGTTGAGCAGAG
CAAATTCCAGAAAATGGCGACAAATCCAGCCACGAACAAGGTTGAAGGGA
AGGAGGCCAAAGCGGGGATATTTGACTCCTCGAAAGGAACTTTCTTTAGA
AAAGGTACAGTTGGTGACTGGAAGTCTCACTTCAGTGACGAACAGAGCCA
GTGGTTTGACACGTTCTACCAGGAAAAACTGGGACCAACTGGACTTCAGT
TCGACTTTGAATGAATGGCGGCCGGTGGGGACGATCGTGTCCAATATTAC
AGGTACAAGGGGATTCCTCTCCCGAGTCACCTTGTACCTGAAGACATGGA
CGCCATTCAAGACTTCGCCGTTCGAGACGATGACGTGTTTATTGTCACGT
ATCCCAAGTCAGGAACAGCCTGGCTACAGCGCATCGTTTCTCTGTTGCGT
TTTGGCGGCGACGTGTCGAAAACTGACATGAAAGAACAAGACAAATTGGT
GCCTTACTTTGAACAGAAGTGTGGAGACAGCGCCACCTTTCGGGAACTAC
CGGAAGCTCCATCACCAAGACTGTTAAAAAGTCATCTTAACTTCAGTCAT
GCTCCAGTACAACTTGCGCAGGGGAAAGGAAAAGTCATCTACGTCGCCAG
GAACCCAAAAGATCTTGCGGTGTCCTACTATTACTTCCACTTCATGGTTA
CAACACTGAAGAACCCCACATCCTGGGAACAGTTCCTACAGGACTTCGTA
AACGGCGAAGTGAGCAGGGGAGCATGGCACGACCACGTGCTGGGCTGGTG
GGAACAGAAAGACAGCCCAAACGTGTTATTCCTCAGGTACGAGGACCTAC
AAAAAAACACCCGGAAACAGGTGGGGAAAGTGTCGGAGTTCCTGCAGTGG
CCCGTGACCCCGGAAGTGATTGGCAAGGTCGTTGAGCAGAGCAAATTCCA
GAAAATGGCGACAAATCCAGCCACGAACAAGGTTGAAGGGAAGGAGGCCA
AAGCGGGGATATTTGACTCCTCGAAAGGAACTTTCTTTAGAAAAGGTACA
GTTGGTGACTGGAAGTCTCACTTCAGTGACGAACAGAGCCAGTGGTTTGA
CACGTTCTACCAGGAAAAACTGGGACCAACTGGACTTCAGTTCGACTTTG
AATGAATGGCGGCCGGTGGGGACGATCGTGTCCAATATTACAGGTACAAG
GGGATTCCTCTCCCGAGTCACCTTGTACCTGAAGACATGGACGCCATTCA
AGACTTCGCCGTTCGAGACGATGACGTGTTTATTGTCACGTATCCCAAGT
CAGGAACAGCCTGGCTACAGCGCATCGTTTCTCTGTTGCGTTTTGGCGGC
GACGTGTCGAAAACTGACATGAAAGAACAAGACAAATTGGTGCCTTACTT
TGAACAGAAGTGTGGAGACAGCGCCACCTTTCGGGAACTACCGGAAGCTC
CATCACCAAGACTGTTAAAAAGTCATCTTAACTTCAGTCATGCTCCAGTA
CAACTTGCGCAGGGGAAAGGAAAAGTCATCTACGTCGCCAGGAACCCAAA
AGATCTTGCGGTGTCCTACTATTACTTCCACTTCATGGTTACAACACTGA
AGAACCCCACATCCTGGGAACAGTTCCTACAGGACTTCGTAAACGGCGAA
GTGAGCAGGGGAGCATGGCACGACCACGTGCTGGGCTGGTGGGAACAGAA
AGACAGCCCAAACGTGTTATTCCTCAGGTACGAGGACCTACAAAAAAACA
CCCGGAAACAGGTGGGGAAAGTGTCGGAGTTCCTGCAGTGGCCCGTGACC
CCGGAAGTGATTGGCAAGGTCGTTGAGCAGAGCAAATTCCAGAAAATGGC
GACAAATCCAGCCACGAACAAGGTTGAAGGGAAGGAGGCCAAAGCGGGGA
TATTTGACTCCTCGAAAGGAACTTTCTTTAGAAAAGGTACAGTTGGTGAC
TGGAAGTCTCACTTCAGTGACGAACAGAGCCAGTGGTTTGACACGTTCTA
CCAGGAAAAACTGGGACCAACTGGACTTCAGTTCGACTTTGAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000245 | genome | Sc0000245:343455..347380 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97299_cuf7 |
| Biotype | protein_coding |
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