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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97297_cuf1 >transcript:BL97297_cuf1-protein ID=transcript:BL97297_cuf1-protein|Name=transcript:BL97297_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=231bp
LQAADIDLVSVMPGKEEVKAATNQPSHRDKDVGLFTAFKESENSDKKEKE
EERKAGSVTLLVYLDFFRSGCGLVRGVFLILLIILPQVPYILCDWWLSYW
AETTQLSNSVTLYNTTSNISGTHSTAINNIPAVSVPSTSFLPIYAGLVGA
LGMLSAVRALLFFNVAVTSAEHLHNSMLMSILQAPMVFFDSNPVGRILNR
FSKDIGIMDELLPQAFFDYLQLILIVVSALL Run BLAST on NCBI mRNA from alignment at Sc0000149:330721..332863- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97297_cuf1 ID=transcript:BL97297_cuf1|Name=transcript:BL97297_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2143bp|location=Sequence derived from alignment at Sc0000149:330721..332863- (Branchiostoma lanceolatum)
AACTGCAAGCTGCAGACATAGACTTGGTGTCTGTTATGCCTGGAAAAGAG
GAAGTAAAGGCAGCAACAAACCAACCGTCCCACCGAGACAAGGATGTGGG
ACTGTTTACAGCTTTCAAAGAGTCTGAAAACTCTGATAAGGTACTCATCA
ATCATTTTACTATTGAGTTGAGTTACATTATATCACTTTGAAAACATGGA
GTTTTACTGTATCATTCTGTTTGCATACTATATAATATGATAGTTCTATT
CTTTTACATCTATAGAGTGACCTGAATGCTATTTCACTGTAAGAGATATG
TTGAAATATGATTTTAGACTCTGAGATATCATTTCAACTTTAATGAATCA
TTGCTGTATATTCAAGATGCTCATCTTTTCATGAATCATTAAAAAAGATC
AAGATTTTAAGATCTGAATGTTGATATGATTCTTTAGTTAATCACTGCCT
GAACTGAAATGTTTGCCTTGAAATCCCAGAAGGAGAAAGAGGAGGAGAGA
AAGGCTGGATCCGTCACCTTACTAGTGTACCTGGATTTCTTCCGGTCGGG
TTGTGGACTTGTCAGGGGTGTCTTCCTAATTCTGCTGATAATCCTTCCAC
AGGTGATGTTCATCAGTGCTTGTCACGGTGCTTTAAAAACTACTAATTGG
TGCAATGTTTGTGTTGAATGATAATCATCATCATTATCATAAAGAATTAT
GCTTTCATGTCTTTAAAAGTGTACCATTTTCACCAACCCATTGAGTAATA
TTTATCAAATACCCTTACTGACAGGTCCCCTACATTCTATGTGACTGGTG
GCTGTCATATTGGTAAGTTTTTTTCAATCTATCATTTTGATGATTGTAAT
ATTAATGAAATTTGGTCCTTTTGAGAAAAATGATTTTCATACAATCAGAC
CAGGTTGTCAAGTCCAAGACAAAAATGTACTTTGTTCTAGAGCACAGCCT
TTGCTGTAGATGATCTATAAGGCAGGCTATGCAAATATATACCTTTTGTC
AGAAATCAACCCAATGTCGAAGTTAGCATGCCAACAAAGGTTATCCATAC
AACTACATTTGTTTTTGAATCTTAATTTTATATACTAGTGAATTCACAGG
ACAGAGGCACCTGGTGAGCAGCCACCAAGCTTCCCCATCAGCATGCAAGC
ACGTCAAACCCTCAGATGATGGGGAAAAGAGGATGTTAAACCGGATAGTG
AGTGAGTGAGTGAGTGAGTGTAGTGCTCACAGGTAATTTATATTTTGTTG
CTTGCATGTTCACTTTATCCAGGGCAGAAACAACACAGTTGAGCAACAGT
GTAACCCTCTACAACACCACTTCCAACATCAGCGGTACCCACAGCACAGC
CATCAACAACATCCCAGCAGTTTCAGTTCCGAGCACATCATTCCTGCCCA
TCTACGCAGGCCTTGTAGGGGCATTAGGCATGCTCTCTGCTGTCCGGGCA
TTGCTGTTCTTCAATGTAGCAGTGACGTCAGCAGAGCACCTGCACAACTC
CATGTTGATGAGCATCCTCCAGGCACCGATGGTCTTCTTTGACTCCAACC
CTGTTGGTAGGGATGAAGTTTCTAAACAGTAATGATTTATCTGACATACT
TATGAGTTCTCTTTGTCCATGCAAACATTCCAACATTAAAGTTCAAAAGA
CTGTAGCATCTTGTCAGAGTCAGCCATTTAAGAAGCAGTATCAATGTGAT
CTTATTTCTTAGGAAGAATCCTGAACCGTTTTTCAAAAGACATTGGAATC
ATGGATGAACTGCTACCACAAGCATTCTTTGATTATCTACAGGTGAGTGA
GTTTCTGAACATCATTAACTAAAACTTAGGGGATTGGATCTTAAACAAGC
TTTGTTATGAATAATACCCTGACTAATCCAAGCAATAATTCCAAGCAATA
ATTCCTGTCACCATTTGATTTTAGANTAATTCCTTTCACCTTTTGATTTT
AGATGTGATAATCAATGTAATCATTCAGAAATGCTTTACTGCTTTCACAC
TCAAAAATTCATGTGAAATCCATGAGATGAAACAACCCACTGCTGCTACC
TGTAGTTCTGGATAGCACGTAGACTCCACATTTGGTCTAAAAACTGCTTT
AATCTATATTCAGCTGATCCTGATTGTAGTAAGTGCCCTCCTG Coding sequence (CDS) from alignment at Sc0000149:330721..332863- >transcript:BL97297_cuf1 ID=transcript:BL97297_cuf1|Name=transcript:BL97297_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=4158bp|location=Sequence derived from alignment at Sc0000149:330721..332863- (Branchiostoma lanceolatum)
CTGCAAGCTGCAGACATAGACTTGGTGTCTGTTATGCCTGGAAAAGAGGA
AGTAAAGGCAGCAACAAACCAACCGTCCCACCGAGACAAGGATGTGGGAC
TGTTTACAGCTTTCAAAGAGTCTGAAAACTCTGATAAGAAGGAGAAAGAG
GAGGAGAGAAAGGCTGGATCCGTCACCTTACTAGTGTACCTGGATTTCTT
CCGGTCGGGTTGTGGACTTGTCAGGGGTGTCTTCCTAATTCTGCTGATAA
TCCTTCCACAGGTCCCCTACATTCTATGTGACTGGTGGCTGTCATATTGG
GCAGAAACAACACAGTTGAGCAACAGTGTAACCCTCTACAACACCACTTC
CAACATCAGCGGTACCCACAGCACAGCCATCAACAACATCCCAGCAGTTT
CAGTTCCGAGCACATCATTCCTGCCCATCTACGCAGGCCTTGTAGGGGCA
TTAGGCATGCTCTCTGCTGTCCGGGCATTGCTGTTCTTCAATGTAGCAGT
GACGTCAGCAGAGCACCTGCACAACTCCATGTTGATGAGCATCCTCCAGG
CACCGATGGTCTTCTTTGACTCCAACCCTGTTGGAAGAATCCTGAACCGT
TTTTCAAAAGACATTGGAATCATGGATGAACTGCTACCACAAGCATTCTT
TGATTATCTACAGCTGATCCTGATTGTAGTAAGTGCCCTCCTGCTGCAAG
CTGCAGACATAGACTTGGTGTCTGTTATGCCTGGAAAAGAGGAAGTAAAG
GCAGCAACAAACCAACCGTCCCACCGAGACAAGGATGTGGGACTGTTTAC
AGCTTTCAAAGAGTCTGAAAACTCTGATAAGAAGGAGAAAGAGGAGGAGA
GAAAGGCTGGATCCGTCACCTTACTAGTGTACCTGGATTTCTTCCGGTCG
GGTTGTGGACTTGTCAGGGGTGTCTTCCTAATTCTGCTGATAATCCTTCC
ACAGGTCCCCTACATTCTATGTGACTGGTGGCTGTCATATTGGGCAGAAA
CAACACAGTTGAGCAACAGTGTAACCCTCTACAACACCACTTCCAACATC
AGCGGTACCCACAGCACAGCCATCAACAACATCCCAGCAGTTTCAGTTCC
GAGCACATCATTCCTGCCCATCTACGCAGGCCTTGTAGGGGCATTAGGCA
TGCTCTCTGCTGTCCGGGCATTGCTGTTCTTCAATGTAGCAGTGACGTCA
GCAGAGCACCTGCACAACTCCATGTTGATGAGCATCCTCCAGGCACCGAT
GGTCTTCTTTGACTCCAACCCTGTTGGAAGAATCCTGAACCGTTTTTCAA
AAGACATTGGAATCATGGATGAACTGCTACCACAAGCATTCTTTGATTAT
CTACAGCTGATCCTGATTGTAGTAAGTGCCCTCCTGCTGCAAGCTGCAGA
CATAGACTTGGTGTCTGTTATGCCTGGAAAAGAGGAAGTAAAGGCAGCAA
CAAACCAACCGTCCCACCGAGACAAGGATGTGGGACTGTTTACAGCTTTC
AAAGAGTCTGAAAACTCTGATAAGAAGGAGAAAGAGGAGGAGAGAAAGGC
TGGATCCGTCACCTTACTAGTGTACCTGGATTTCTTCCGGTCGGGTTGTG
GACTTGTCAGGGGTGTCTTCCTAATTCTGCTGATAATCCTTCCACAGGTC
CCCTACATTCTATGTGACTGGTGGCTGTCATATTGGGCAGAAACAACACA
GTTGAGCAACAGTGTAACCCTCTACAACACCACTTCCAACATCAGCGGTA
CCCACAGCACAGCCATCAACAACATCCCAGCAGTTTCAGTTCCGAGCACA
TCATTCCTGCCCATCTACGCAGGCCTTGTAGGGGCATTAGGCATGCTCTC
TGCTGTCCGGGCATTGCTGTTCTTCAATGTAGCAGTGACGTCAGCAGAGC
ACCTGCACAACTCCATGTTGATGAGCATCCTCCAGGCACCGATGGTCTTC
TTTGACTCCAACCCTGTTGGAAGAATCCTGAACCGTTTTTCAAAAGACAT
TGGAATCATGGATGAACTGCTACCACAAGCATTCTTTGATTATCTACAGC
TGATCCTGATTGTAGTAAGTGCCCTCCTGCTGCAAGCTGCAGACATAGAC
TTGGTGTCTGTTATGCCTGGAAAAGAGGAAGTAAAGGCAGCAACAAACCA
ACCGTCCCACCGAGACAAGGATGTGGGACTGTTTACAGCTTTCAAAGAGT
CTGAAAACTCTGATAAGAAGGAGAAAGAGGAGGAGAGAAAGGCTGGATCC
GTCACCTTACTAGTGTACCTGGATTTCTTCCGGTCGGGTTGTGGACTTGT
CAGGGGTGTCTTCCTAATTCTGCTGATAATCCTTCCACAGGTCCCCTACA
TTCTATGTGACTGGTGGCTGTCATATTGGGCAGAAACAACACAGTTGAGC
AACAGTGTAACCCTCTACAACACCACTTCCAACATCAGCGGTACCCACAG
CACAGCCATCAACAACATCCCAGCAGTTTCAGTTCCGAGCACATCATTCC
TGCCCATCTACGCAGGCCTTGTAGGGGCATTAGGCATGCTCTCTGCTGTC
CGGGCATTGCTGTTCTTCAATGTAGCAGTGACGTCAGCAGAGCACCTGCA
CAACTCCATGTTGATGAGCATCCTCCAGGCACCGATGGTCTTCTTTGACT
CCAACCCTGTTGGAAGAATCCTGAACCGTTTTTCAAAAGACATTGGAATC
ATGGATGAACTGCTACCACAAGCATTCTTTGATTATCTACAGCTGATCCT
GATTGTAGTAAGTGCCCTCCTGCTGCAAGCTGCAGACATAGACTTGGTGT
CTGTTATGCCTGGAAAAGAGGAAGTAAAGGCAGCAACAAACCAACCGTCC
CACCGAGACAAGGATGTGGGACTGTTTACAGCTTTCAAAGAGTCTGAAAA
CTCTGATAAGAAGGAGAAAGAGGAGGAGAGAAAGGCTGGATCCGTCACCT
TACTAGTGTACCTGGATTTCTTCCGGTCGGGTTGTGGACTTGTCAGGGGT
GTCTTCCTAATTCTGCTGATAATCCTTCCACAGGTCCCCTACATTCTATG
TGACTGGTGGCTGTCATATTGGGCAGAAACAACACAGTTGAGCAACAGTG
TAACCCTCTACAACACCACTTCCAACATCAGCGGTACCCACAGCACAGCC
ATCAACAACATCCCAGCAGTTTCAGTTCCGAGCACATCATTCCTGCCCAT
CTACGCAGGCCTTGTAGGGGCATTAGGCATGCTCTCTGCTGTCCGGGCAT
TGCTGTTCTTCAATGTAGCAGTGACGTCAGCAGAGCACCTGCACAACTCC
ATGTTGATGAGCATCCTCCAGGCACCGATGGTCTTCTTTGACTCCAACCC
TGTTGGAAGAATCCTGAACCGTTTTTCAAAAGACATTGGAATCATGGATG
AACTGCTACCACAAGCATTCTTTGATTATCTACAGCTGATCCTGATTGTA
GTAAGTGCCCTCCTGCTGCAAGCTGCAGACATAGACTTGGTGTCTGTTAT
GCCTGGAAAAGAGGAAGTAAAGGCAGCAACAAACCAACCGTCCCACCGAG
ACAAGGATGTGGGACTGTTTACAGCTTTCAAAGAGTCTGAAAACTCTGAT
AAGAAGGAGAAAGAGGAGGAGAGAAAGGCTGGATCCGTCACCTTACTAGT
GTACCTGGATTTCTTCCGGTCGGGTTGTGGACTTGTCAGGGGTGTCTTCC
TAATTCTGCTGATAATCCTTCCACAGGTCCCCTACATTCTATGTGACTGG
TGGCTGTCATATTGGGCAGAAACAACACAGTTGAGCAACAGTGTAACCCT
CTACAACACCACTTCCAACATCAGCGGTACCCACAGCACAGCCATCAACA
ACATCCCAGCAGTTTCAGTTCCGAGCACATCATTCCTGCCCATCTACGCA
GGCCTTGTAGGGGCATTAGGCATGCTCTCTGCTGTCCGGGCATTGCTGTT
CTTCAATGTAGCAGTGACGTCAGCAGAGCACCTGCACAACTCCATGTTGA
TGAGCATCCTCCAGGCACCGATGGTCTTCTTTGACTCCAACCCTGTTGGA
AGAATCCTGAACCGTTTTTCAAAAGACATTGGAATCATGGATGAACTGCT
ACCACAAGCATTCTTTGATTATCTACAGCTGATCCTGATTGTAGTAAGTG
CCCTCCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000149 | genome | Sc0000149:330721..332863 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97297_cuf1 |
| Biotype | protein_coding |
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