transcript:BL97291_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97291_cuf1
Unique Nametranscript:BL97291_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97291_cuf1

>transcript:BL97291_cuf1-protein ID=transcript:BL97291_cuf1-protein|Name=transcript:BL97291_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=153bp
FADCDCGIHPCILNATGYFCHCLVGYQKKGDDCFDIDECADPNICPNARC
INRPGSYSCQCLTGYEGPVCADIDECRYAGFCPDHSACTNTDGDYYCSCL
QGYQGDNCEDIDECHNSSLNTCGPNQLCVNTAGSFHCDDCTVYDGKCYIM
SDT
Run BLAST on NCBI

mRNA from alignment at Sc0000250:276106..279246-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97291_cuf1 ID=transcript:BL97291_cuf1|Name=transcript:BL97291_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3141bp|location=Sequence derived from alignment at Sc0000250:276106..279246- (Branchiostoma lanceolatum)
ATTTGCTGACTGCGACTGTGGCATCCATCCTTGCATTTTGAATGCAACGG
GGTATTTCTGCCATTGTTTGGTTGGGTATCAGAAGAAAGGCGATGACTGT
TTTGGTCAGTATCTGTATGTACATTAAGCATAGTCTAACCAAATCATACC
TCTAGTTGCCTTTCCATTGGTCTGGCCCTTAGAAGCCTAATAACCAACGC
CTGTAAACCAGGAGAGTTATGAAAATCATAATCCTTAAAAATTATTAACA
AACATCTTTGCTATCAATACACCACGTCGGAATGAGAACTGCAAGTTACC
ATGGCGATAAAAGCTGTTATGGCTGGTTTCTATGGTGACAGAAATATCTG
AGCTCCTATGGGGATGATCTATAAAGTGAAAAAAGAGTCGTGAGTTCCTA
TTCGTATGACCATTTTTGAAAATCAGTCTCTTGGCTTGAACACAAACTTT
GTAAGGAGAGGCATTTGAGTAAAATAGACTTTGACTACTCGTACTCCGGT
CTCCATTTTTGTTTGTTTGATAGTAAAAAAATATATATACTTAAGAAACA
GCACACTAGCATCACGGTCACCTCGATATCTCAGGTAACGTATCATTGTG
CTTCTGTGGTACTTTATATTTACGTTTCTATGCTTGTGTTTGTTTTGTAA
TATTTTAAACAGAAACATTATGTTTTAAAATTGAATATTATCAGACCATT
GTCTTTGCAGTGAACGGTAAGAGAGACTAGCGTTGTAGTCATTTAAAATT
TAATTTATTTACGACCTTATAGTATGTTACTTTTAATGATTAGCTGTCTT
ACCAACTTCATACAGACATAGACGAGTGTGCAGACCCGAACATCTGCCCC
AATGCCAGGTGTATCAACCGTCCAGGCAGCTACTCCTGTCAGTGTCTGAC
GGGATACGAGGGGCCAGTTTGTGCAGGTAAAATTTTCGAATTTAATTAAG
TATAAAGAATTTTAACCTTTATCCTACAGATATAAATACACCTATCGGTT
TGCATTAGATAGATGTCAATTCTGTTTCAATGTCGTTGATGAATATATAT
GTATATTTTTTTTTAATTTCCTAGATATCGATGAGTGTCGTTATGCCGGT
TTCTGTCCCGATCACTCCGCCTGCACTAACACTGACGGCGACTATTACTG
TTCCTGTTTGCAAGGGTATCAAGGAGACAACTGTGAAGGTAATGATGTTG
GAAAAGACACCCAAATACCATCCCTTGGTTTCTCAAACATTGACTTTTTC
TACTCACTGTAGTCAAGAAAATCAATCATCTTATTTGGATCATAAGGTAT
GAACCCAGTTGATATTGCTGCGAAAGTACTGGAATTTTAGTCAACATACT
TATGCTATTGAGCTTATTAGATTATTTAGTATCATGTTATGAGTTTGAAT
TATTGAAAAATTTATCGACAGTTCGGCTTACGAATTGAAATAACGGGTTT
TATAATCATCCGTACACTGTAGACCAATATGTTATTAACTGATGCAATTT
TTTGCTGGTTTTCTAATTTGTTTCAGACATAGATGAATGTCACAATTCCA
GCTTGAACACGTGCGGACCAAACCAGCTTTGTGTCAATACAGCTGGTTCC
TTTCATTGTGATGGTAAGATCAAAATAGTTCTGGTTCAGTTAATTTTTTG
TTGTTATTCAAGATGGTCAAAGCAACTCAACTACGATGCTGGTTCATGTC
AGCAATTTTTTTTTTTACTAATTTCACCCAAGTCATTCCATTCCATCAAA
AACTAAAAATACACCAACCTCTGGTAAATACGCAAGTAGTATAAAGTACA
AAGTTAGCCCTTGGCAGTAGCAGCATTTTATGTTTGTTTTTTTTGCAAAC
AAATAAATTGATGGATAATTGAATAAAATAGTATAAACTAGGTCACACAT
CCATAAAGCCCACTAACCAAATACTTGTTGCAACAAAAAACCCTTTAGAT
TGTCTAGATTTTGACTTACCAATTTCATACAGATTGCACGGTGTACGATG
GAAAGTGCTACATCATGTCTGACACTTGAGGAACATTCGTCGATGCTAAA
ACAAAGTGTGCTGAAGAAGGAGGTATTCTGGTCACAGTTAAAGACCAGCA
TACTCAGGACTTCCTTATCCAGCTGTTGTCCGTTTCCAACAAGGACGTGT
GAATCGGTCTGACTGACCAGGACGTGGAGGGTCAGTTTGTGTGGGCTGAC
GGAGCACCACTGGTTTACAGCAACTGGGCTCCAGGTGCAAAATATTATAA
TTCTTATCCTATGGCTCTGTCTGTTTCGGTCGGTTGCACAAACAGCTTAA
GAACAAGCGTGTAAAAAATCATAAAGGATTTTCACTTGGTGTTATGATTA
CAGTTGATGGATGGTGCTGATGCCTGAATATTTAAATATGCTATATTATT
TGACATTGCAGGAGAACCGAATGGTGACGACACGACCAACTGTGTTCATC
TGTGGCCCCTGGCGAACTTCCGCTGGGACGACATGCCGTGTGGAAGAAGT
AATTACTACATCTGTCAGTACAACATGGCTTAGGTTACAGCCTACATTAT
AGCCGCCAGTACACCCGTGCATACATGCACGCAGTAACAACGACCTGTGT
CTACCAGTACAAAATGTTATTGGCAAATTACAACCCACATGTAACGTTAC
GTCTGTCAGTGCAATAATTACCACTTGTTCAAATTAGTTAGTAATTTTTT
GCACAACTTGACCAATGTATGTCAAGTTGTGCATACTTCTGACAAATAAG
TCAACGCTATTCTCGTACATAGGAAATAAGAATACATTTTTCTCTAAAAA
CCATAAAATTCAATATGCACAATTTGCAACGTTGCGGCTTTCCGTGCGTT
ATTATAATTTAACGTTGTACGAAATCATTATTTTCGACTTCCTAGGTTAG
AAAATATTGTGGAGATACTCAAATGACTGAACATCGATATCATATGCCTT
TTTCCAGCTAGTTGATTGGTTGTACTCTAATTTAAATGTAGCTGCTTAAA
AATAAAGAGAGAAAATCATCCTTCTGTGTGGATTATTCAATAGCATAGTA
CGGCATACCGAGAAAAACTAGATACATCTATTCCCGAAATAGAAGCCTCG
TTCAATCAAGTCGAAAGAATAAGGCCTGATGAATCGCTTCA

Coding sequence (CDS) from alignment at Sc0000250:276106..279246-

>transcript:BL97291_cuf1 ID=transcript:BL97291_cuf1|Name=transcript:BL97291_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2310bp|location=Sequence derived from alignment at Sc0000250:276106..279246- (Branchiostoma lanceolatum)
TTTGCTGACTGCGACTGTGGCATCCATCCTTGCATTTTGAATGCAACGGG
GTATTTCTGCCATTGTTTGGTTGGGTATCAGAAGAAAGGCGATGACTGTT
TTGACATAGACGAGTGTGCAGACCCGAACATCTGCCCCAATGCCAGGTGT
ATCAACCGTCCAGGCAGCTACTCCTGTCAGTGTCTGACGGGATACGAGGG
GCCAGTTTGTGCAGATATCGATGAGTGTCGTTATGCCGGTTTCTGTCCCG
ATCACTCCGCCTGCACTAACACTGACGGCGACTATTACTGTTCCTGTTTG
CAAGGGTATCAAGGAGACAACTGTGAAGACATAGATGAATGTCACAATTC
CAGCTTGAACACGTGCGGACCAAACCAGCTTTGTGTCAATACAGCTGGTT
CCTTTCATTGTGATGATTGCACGGTGTACGATGGAAAGTGCTACATCATG
TCTGACACTTGATTTGCTGACTGCGACTGTGGCATCCATCCTTGCATTTT
GAATGCAACGGGGTATTTCTGCCATTGTTTGGTTGGGTATCAGAAGAAAG
GCGATGACTGTTTTGACATAGACGAGTGTGCAGACCCGAACATCTGCCCC
AATGCCAGGTGTATCAACCGTCCAGGCAGCTACTCCTGTCAGTGTCTGAC
GGGATACGAGGGGCCAGTTTGTGCAGATATCGATGAGTGTCGTTATGCCG
GTTTCTGTCCCGATCACTCCGCCTGCACTAACACTGACGGCGACTATTAC
TGTTCCTGTTTGCAAGGGTATCAAGGAGACAACTGTGAAGACATAGATGA
ATGTCACAATTCCAGCTTGAACACGTGCGGACCAAACCAGCTTTGTGTCA
ATACAGCTGGTTCCTTTCATTGTGATGATTGCACGGTGTACGATGGAAAG
TGCTACATCATGTCTGACACTTGATTTGCTGACTGCGACTGTGGCATCCA
TCCTTGCATTTTGAATGCAACGGGGTATTTCTGCCATTGTTTGGTTGGGT
ATCAGAAGAAAGGCGATGACTGTTTTGACATAGACGAGTGTGCAGACCCG
AACATCTGCCCCAATGCCAGGTGTATCAACCGTCCAGGCAGCTACTCCTG
TCAGTGTCTGACGGGATACGAGGGGCCAGTTTGTGCAGATATCGATGAGT
GTCGTTATGCCGGTTTCTGTCCCGATCACTCCGCCTGCACTAACACTGAC
GGCGACTATTACTGTTCCTGTTTGCAAGGGTATCAAGGAGACAACTGTGA
AGACATAGATGAATGTCACAATTCCAGCTTGAACACGTGCGGACCAAACC
AGCTTTGTGTCAATACAGCTGGTTCCTTTCATTGTGATGATTGCACGGTG
TACGATGGAAAGTGCTACATCATGTCTGACACTTGATTTGCTGACTGCGA
CTGTGGCATCCATCCTTGCATTTTGAATGCAACGGGGTATTTCTGCCATT
GTTTGGTTGGGTATCAGAAGAAAGGCGATGACTGTTTTGACATAGACGAG
TGTGCAGACCCGAACATCTGCCCCAATGCCAGGTGTATCAACCGTCCAGG
CAGCTACTCCTGTCAGTGTCTGACGGGATACGAGGGGCCAGTTTGTGCAG
ATATCGATGAGTGTCGTTATGCCGGTTTCTGTCCCGATCACTCCGCCTGC
ACTAACACTGACGGCGACTATTACTGTTCCTGTTTGCAAGGGTATCAAGG
AGACAACTGTGAAGACATAGATGAATGTCACAATTCCAGCTTGAACACGT
GCGGACCAAACCAGCTTTGTGTCAATACAGCTGGTTCCTTTCATTGTGAT
GATTGCACGGTGTACGATGGAAAGTGCTACATCATGTCTGACACTTGATT
TGCTGACTGCGACTGTGGCATCCATCCTTGCATTTTGAATGCAACGGGGT
ATTTCTGCCATTGTTTGGTTGGGTATCAGAAGAAAGGCGATGACTGTTTT
GACATAGACGAGTGTGCAGACCCGAACATCTGCCCCAATGCCAGGTGTAT
CAACCGTCCAGGCAGCTACTCCTGTCAGTGTCTGACGGGATACGAGGGGC
CAGTTTGTGCAGATATCGATGAGTGTCGTTATGCCGGTTTCTGTCCCGAT
CACTCCGCCTGCACTAACACTGACGGCGACTATTACTGTTCCTGTTTGCA
AGGGTATCAAGGAGACAACTGTGAAGACATAGATGAATGTCACAATTCCA
GCTTGAACACGTGCGGACCAAACCAGCTTTGTGTCAATACAGCTGGTTCC
TTTCATTGTGATGATTGCACGGTGTACGATGGAAAGTGCTACATCATGTC
TGACACTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97291gene:BL97291Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97291_cuf1transcript:BL97291_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97291_cuf1-E1BL97291_cuf1-E1-1564476830-409072Branchiostoma lanceolatumexon
BL97291_cuf1-E2BL97291_cuf1-E2-1564476830-409069Branchiostoma lanceolatumexon
BL97291_cuf1-E3BL97291_cuf1-E3-1564476830-409067Branchiostoma lanceolatumexon
BL97291_cuf1-E4BL97291_cuf1-E4-1564476830-409065Branchiostoma lanceolatumexon
BL97291_cuf1-E5BL97291_cuf1-E5-1564476830-409063Branchiostoma lanceolatumexon
BL97291_cuf1-E6BL97291_cuf1-E6-1564476830-409060Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000250genomeSc0000250:276106..279246 -
Properties
Property NameValue
Transcript idBL97291_cuf1
Biotypeprotein_coding