transcript:BL97290_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97290_cuf1
Unique Nametranscript:BL97290_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97290_cuf1

>transcript:BL97290_cuf1-protein ID=transcript:BL97290_cuf1-protein|Name=transcript:BL97290_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=206bp
PTCVEMRCPTLSFPPNGQMIGGVVIGDLLRFTCNLGYNLVGNNTLLCRND
KTWNGTRPNCEKVVCPPPDVPSNCDVNGGRTYGDTVTYTCDVGYRLDGTG
TRVCLATGVWGDTAPRCERKTCTILFPPLHGSVSGGHHYGDMMTYACDTG
YDLIGSPSRICQENQQWTSSQPICKLVQCTRLNAPTQGTMNGGNNYNNTV
FFTCAE
Run BLAST on NCBI

mRNA from alignment at Sc0000250:283963..286096-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97290_cuf1 ID=transcript:BL97290_cuf1|Name=transcript:BL97290_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2134bp|location=Sequence derived from alignment at Sc0000250:283963..286096- (Branchiostoma lanceolatum)
CCGACATGTGTGGGTGAGTACTTTTGAAATGTTGTTGCAATAAACCATTT CGAACTTCCAAGTGACCATGTGTAGTGATTCATTGTGGTCAAGGTCACTG TCTTGTAACAAACCCATGATACTTGTCTTGATGTTTTGCAACATTTCTGT TGCTTCTGGAGCCAGCTTAACAAGCTGAAAAGTCCATTGCACAAAAATAA CACAGCAGAATACGACACAATACAGCCACGGCCGATGTTTCTCTACTCCT AAATCTCTGCTTCTGACATCATATATAATTAGCTACAATCAGATGCAGCG CCAAAACTGCCGGGTAGTTCATTGCTTGATCGTTATGGGAATGCCTTGGG TACATGTTTCGTACATTTAAAGTAATTTCTATGTTCTTACATATTGATTG GCTAACATAACTTAGTATACATAATAATGAATGAAAAAAGATAAAAAGAG AACATTTAGCTCCAGGTGAGAATTAAATTATCACTTTTGGAATTCCTGCT AAAATTTCAATTTTGCAATGTCTCCTCCTCATCCACGTATATGCGTGTCA ATTTTCCCCATTTTATGTTAACAGAAATGCGATGTCCTACCTTGTCCTTC CCACCCAATGGACAAATGATCGGTGGAGTGGTAATTGGAGACCTTCTTCG GTTTACCTGCAATTTGGGGTATAACCTTGTCGGAAACAATACCCTTCTTT GTCGGAACGACAAGACATGGAACGGAACCCGACCAAACTGTGAAAGTATG TACCTCGTTCTATACTACTCAACATATTGGGTATCAACTTAGCATATTCA AGAGACCATAACCCGATACCATTTTTACATCACTCTTAATGGGTTGTGTT TATTTCGTTTTGGATTTTTCTATTGATAGAGGTGGTCTGCCCACCCCCTG ATGTGCCTTCTAACTGTGACGTCAATGGCGGAAGGACCTATGGAGACACG GTGACGTACACCTGTGACGTCGGCTACAGACTCGACGGTACCGGTACTAG GGTTTGTCTCGCAACGGGTGTATGGGGCGACACTGCGCCACGGTGTGAAA GTACGTGTTTTACCTTGGAATGAATACAAGTTTATATTATCCATGTTGGG ATATAGCAGTAAGGTCCTGAGTTATTCTATTGAAGTACAGCAGGCAGCTT GCAAATTTTTTGAATGCAGTATTTTGTTTTTGACCCTAATCATTTTCAAG AATACCTTTCCACAAGTATGCTATGATCTCTTTTTCCAGATATGACACAT GCTACCAGTTTCAGCGTTGTTATGATTGGTAATAGTAGCGGTCCTTAGTG CACTATGTTCTGCTGCTGCTGTGATCTGAACATTATGCAACTGAAATCAG TCCTTCTTAAGTTCTCTCCACTGCATCGCGAGCTTCATTAGCTCCCGTAG TTTCTTTGTAATATTTATCTTCTATTCTTTACAAAAAACAATTGAAGATA AAAATCTTGTATTGTTTTTGGTTACTAAAGATGTCTATGTTTCCCTGACA GGAAAGACGTGTACAATACTATTCCCTCCGTTACACGGGTCCGTGTCAGG AGGACATCACTATGGAGACATGATGACATATGCATGTGACACCGGTTACG ACCTGATCGGAAGTCCGAGTAGAATCTGTCAGGAGAACCAGCAATGGACC AGCTCCCAGCCAATTTGTAAATGTATGGCATTTTTTTTGTTTTGTTTATA GTTTTATGTTACTACGATGTATATTGATGATACTTCAATCTGTTATTAAT CATCAAAGTTCATGATCAATCGTTCGATTTAAGTCTGTTTACACATGATA TCAACTGGCCACAAATTGGTGAACTCAAATAGATCCAACAAATATGACAC AATTCCCTAATGCAATCGAAAGATAAGTACCAAACAAACCTGTCTAAATA AGTAAAAAAAGATCGATGGTGGTCTTTCATTGCATATTAGATAATAGTAG ACTATTTCAAAATAGGAATGGGCTAGTAAAGTTTACCAAAATATGTATCA TGGATGTCTGTAGCGGATTTTTATTTTGCTTGTTTGTATCAGTGGTCCAG TGTACCCGGTTGAACGCACCTACCCAAGGCACCATGAACGGTGGTAACAA CTACAACAATACCGTGTTCTTCACCTGTGCAGAG

Coding sequence (CDS) from alignment at Sc0000250:283963..286096-

>transcript:BL97290_cuf1 ID=transcript:BL97290_cuf1|Name=transcript:BL97290_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3090bp|location=Sequence derived from alignment at Sc0000250:283963..286096- (Branchiostoma lanceolatum)
CCGACATGTGTGGAAATGCGATGTCCTACCTTGTCCTTCCCACCCAATGG
ACAAATGATCGGTGGAGTGGTAATTGGAGACCTTCTTCGGTTTACCTGCA
ATTTGGGGTATAACCTTGTCGGAAACAATACCCTTCTTTGTCGGAACGAC
AAGACATGGAACGGAACCCGACCAAACTGTGAAAAGGTGGTCTGCCCACC
CCCTGATGTGCCTTCTAACTGTGACGTCAATGGCGGAAGGACCTATGGAG
ACACGGTGACGTACACCTGTGACGTCGGCTACAGACTCGACGGTACCGGT
ACTAGGGTTTGTCTCGCAACGGGTGTATGGGGCGACACTGCGCCACGGTG
TGAAAGAAAGACGTGTACAATACTATTCCCTCCGTTACACGGGTCCGTGT
CAGGAGGACATCACTATGGAGACATGATGACATATGCATGTGACACCGGT
TACGACCTGATCGGAAGTCCGAGTAGAATCTGTCAGGAGAACCAGCAATG
GACCAGCTCCCAGCCAATTTGTAAATTGGTCCAGTGTACCCGGTTGAACG
CACCTACCCAAGGCACCATGAACGGTGGTAACAACTACAACAATACCGTG
TTCTTCACCTGTGCAGAGCCGACATGTGTGGAAATGCGATGTCCTACCTT
GTCCTTCCCACCCAATGGACAAATGATCGGTGGAGTGGTAATTGGAGACC
TTCTTCGGTTTACCTGCAATTTGGGGTATAACCTTGTCGGAAACAATACC
CTTCTTTGTCGGAACGACAAGACATGGAACGGAACCCGACCAAACTGTGA
AAAGGTGGTCTGCCCACCCCCTGATGTGCCTTCTAACTGTGACGTCAATG
GCGGAAGGACCTATGGAGACACGGTGACGTACACCTGTGACGTCGGCTAC
AGACTCGACGGTACCGGTACTAGGGTTTGTCTCGCAACGGGTGTATGGGG
CGACACTGCGCCACGGTGTGAAAGAAAGACGTGTACAATACTATTCCCTC
CGTTACACGGGTCCGTGTCAGGAGGACATCACTATGGAGACATGATGACA
TATGCATGTGACACCGGTTACGACCTGATCGGAAGTCCGAGTAGAATCTG
TCAGGAGAACCAGCAATGGACCAGCTCCCAGCCAATTTGTAAATTGGTCC
AGTGTACCCGGTTGAACGCACCTACCCAAGGCACCATGAACGGTGGTAAC
AACTACAACAATACCGTGTTCTTCACCTGTGCAGAGCCGACATGTGTGGA
AATGCGATGTCCTACCTTGTCCTTCCCACCCAATGGACAAATGATCGGTG
GAGTGGTAATTGGAGACCTTCTTCGGTTTACCTGCAATTTGGGGTATAAC
CTTGTCGGAAACAATACCCTTCTTTGTCGGAACGACAAGACATGGAACGG
AACCCGACCAAACTGTGAAAAGGTGGTCTGCCCACCCCCTGATGTGCCTT
CTAACTGTGACGTCAATGGCGGAAGGACCTATGGAGACACGGTGACGTAC
ACCTGTGACGTCGGCTACAGACTCGACGGTACCGGTACTAGGGTTTGTCT
CGCAACGGGTGTATGGGGCGACACTGCGCCACGGTGTGAAAGAAAGACGT
GTACAATACTATTCCCTCCGTTACACGGGTCCGTGTCAGGAGGACATCAC
TATGGAGACATGATGACATATGCATGTGACACCGGTTACGACCTGATCGG
AAGTCCGAGTAGAATCTGTCAGGAGAACCAGCAATGGACCAGCTCCCAGC
CAATTTGTAAATTGGTCCAGTGTACCCGGTTGAACGCACCTACCCAAGGC
ACCATGAACGGTGGTAACAACTACAACAATACCGTGTTCTTCACCTGTGC
AGAGCCGACATGTGTGGAAATGCGATGTCCTACCTTGTCCTTCCCACCCA
ATGGACAAATGATCGGTGGAGTGGTAATTGGAGACCTTCTTCGGTTTACC
TGCAATTTGGGGTATAACCTTGTCGGAAACAATACCCTTCTTTGTCGGAA
CGACAAGACATGGAACGGAACCCGACCAAACTGTGAAAAGGTGGTCTGCC
CACCCCCTGATGTGCCTTCTAACTGTGACGTCAATGGCGGAAGGACCTAT
GGAGACACGGTGACGTACACCTGTGACGTCGGCTACAGACTCGACGGTAC
CGGTACTAGGGTTTGTCTCGCAACGGGTGTATGGGGCGACACTGCGCCAC
GGTGTGAAAGAAAGACGTGTACAATACTATTCCCTCCGTTACACGGGTCC
GTGTCAGGAGGACATCACTATGGAGACATGATGACATATGCATGTGACAC
CGGTTACGACCTGATCGGAAGTCCGAGTAGAATCTGTCAGGAGAACCAGC
AATGGACCAGCTCCCAGCCAATTTGTAAATTGGTCCAGTGTACCCGGTTG
AACGCACCTACCCAAGGCACCATGAACGGTGGTAACAACTACAACAATAC
CGTGTTCTTCACCTGTGCAGAGCCGACATGTGTGGAAATGCGATGTCCTA
CCTTGTCCTTCCCACCCAATGGACAAATGATCGGTGGAGTGGTAATTGGA
GACCTTCTTCGGTTTACCTGCAATTTGGGGTATAACCTTGTCGGAAACAA
TACCCTTCTTTGTCGGAACGACAAGACATGGAACGGAACCCGACCAAACT
GTGAAAAGGTGGTCTGCCCACCCCCTGATGTGCCTTCTAACTGTGACGTC
AATGGCGGAAGGACCTATGGAGACACGGTGACGTACACCTGTGACGTCGG
CTACAGACTCGACGGTACCGGTACTAGGGTTTGTCTCGCAACGGGTGTAT
GGGGCGACACTGCGCCACGGTGTGAAAGAAAGACGTGTACAATACTATTC
CCTCCGTTACACGGGTCCGTGTCAGGAGGACATCACTATGGAGACATGAT
GACATATGCATGTGACACCGGTTACGACCTGATCGGAAGTCCGAGTAGAA
TCTGTCAGGAGAACCAGCAATGGACCAGCTCCCAGCCAATTTGTAAATTG
GTCCAGTGTACCCGGTTGAACGCACCTACCCAAGGCACCATGAACGGTGG
TAACAACTACAACAATACCGTGTTCTTCACCTGTGCAGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97290gene:BL97290Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97290_cuf1transcript:BL97290_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97290_cuf1-E1BL97290_cuf1-E1-1564476830-409107Branchiostoma lanceolatumexon
BL97290_cuf1-E2BL97290_cuf1-E2-1564476830-409105Branchiostoma lanceolatumexon
BL97290_cuf1-E3BL97290_cuf1-E3-1564476830-409103Branchiostoma lanceolatumexon
BL97290_cuf1-E4BL97290_cuf1-E4-1564476830-409101Branchiostoma lanceolatumexon
BL97290_cuf1-E5BL97290_cuf1-E5-1564476830-409099Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000250genomeSc0000250:283963..286096 -
Properties
Property NameValue
Transcript idBL97290_cuf1
Biotypeprotein_coding