transcript:BL97289_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97289_cuf0
Unique Nametranscript:BL97289_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97289_cuf0

>transcript:BL97289_cuf0-protein ID=transcript:BL97289_cuf0-protein|Name=transcript:BL97289_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=142bp
ALECPELDAPLNGDKTGGTYVGSFLVFFCHNGYDITGGDFMRTCEADQTW
SGTQPTCQRKICPELQPPLNGNKTGDNLYGDVVTFTCAAGYDLIGSDTRT
CQGNAQWSGTQPSCSRVQCPALSPILNGQMSGGTLFGQMVSF
Run BLAST on NCBI

mRNA from alignment at Sc0000250:282086..283449-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97289_cuf0 ID=transcript:BL97289_cuf0|Name=transcript:BL97289_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1364bp|location=Sequence derived from alignment at Sc0000250:282086..283449- (Branchiostoma lanceolatum)
CAGCACTGGAATGTCCTGAGCTAGATGCACCCTTGAACGGTGACAAGACT GGCGGAACGTATGTGGGGTCTTTCCTCGTCTTCTTCTGCCATAACGGATA TGACATCACCGGTGGTGACTTCATGCGAACCTGCGAGGCTGATCAGACAT GGAGCGGGACTCAACCGACTTGTCAACGTAAGTTTATCTTTTACATGAAT GGATACGTTTTCAATTTCCTTATTTGAAGGCTGTATGCTATCAAAATATT TAAGATACAGATAGAAAACAGAAGAGAAAAATAATTTAAAAATGAGAAAA GAAAAACATAAGAGATAAGATAAAGAGTCCGGAAGCCTTGGCGCGTATAT CATTCGACAATCCAAAAAGATCCTACAAGTGTTTTGAACTCGTGTAGAGG AATGAAATGAATTTTTATAGATTGAATAGAATAGACAATTGTACACGGTC CAATGTATGACAACAACTATTAAAGATAGTACAAAATACAGGTATAGACC AAAACTTAACATTCTAATTACCAATACAATAAGGGCAAGAATAAGTCTTT GGTATAATGTTACAATCGAGTGGGGCTAATCATTAGTTTCGGTATTTCTA TATCTGCCCTAATAGACCTATTGACCGATACAGACACAGACCAAGAATAG TTGCCTACAAATATGACATTTTTCTGTCAACAGGCAAAATATGTCCTGAG CTTCAGCCACCTCTGAACGGAAACAAGACGGGAGACAACCTGTACGGTGA CGTCGTGACGTTTACCTGTGCTGCTGGGTATGATTTGATTGGCAGTGACA CAAGAACGTGTCAGGGGAACGCCCAGTGGAGTGGAACTCAACCCTCCTGT TCTAGTAAGCTATTTTGTACTTTCAATCATGGCAAAATCTTTTTTATTCT TAGACAAAAACATATTCAGTTTGGAAATCATATGAGTGGTAACCATTATA TTACTTTATTGCAAAATAGTGCTGTAAGCACCAATAATAGAGAATAAGTT AATGGCATGAAAGAATACATCAGTACCATAATTACAAAGGCATCAAAGAA AGACAGGAAACGATGTTTATGTAAACAAACATCAAAATATCTTCAAATAC ACAATCATCAGAAGTCTTACGAATACAACTCAGGTTCACAAAATGTTGCA ATTTAGAGTCGTTTAAGATATCAAGTCATGGAGATAGTTCTAGTTGCATG TCAAATGGATAAGTCGAAACATGCAAATGCTTTTCACCAGCATTAAATGT GTTTTTCCCCTGCTCTCGTACATTCTACACAGGAGTGCAGTGTCCAGCCC TGAGCCCTATCCTTAATGGACAAATGAGTGGTGGAACGTTGTTCGGTCAA ATGGTCAGCTTTCT

Coding sequence (CDS) from alignment at Sc0000250:282086..283449-

>transcript:BL97289_cuf0 ID=transcript:BL97289_cuf0|Name=transcript:BL97289_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1278bp|location=Sequence derived from alignment at Sc0000250:282086..283449- (Branchiostoma lanceolatum)
GCACTGGAATGTCCTGAGCTAGATGCACCCTTGAACGGTGACAAGACTGG
CGGAACGTATGTGGGGTCTTTCCTCGTCTTCTTCTGCCATAACGGATATG
ACATCACCGGTGGTGACTTCATGCGAACCTGCGAGGCTGATCAGACATGG
AGCGGGACTCAACCGACTTGTCAACGCAAAATATGTCCTGAGCTTCAGCC
ACCTCTGAACGGAAACAAGACGGGAGACAACCTGTACGGTGACGTCGTGA
CGTTTACCTGTGCTGCTGGGTATGATTTGATTGGCAGTGACACAAGAACG
TGTCAGGGGAACGCCCAGTGGAGTGGAACTCAACCCTCCTGTTCTAGAGT
GCAGTGTCCAGCCCTGAGCCCTATCCTTAATGGACAAATGAGTGGTGGAA
CGTTGTTCGGTCAAATGGTCAGCTTTGCACTGGAATGTCCTGAGCTAGAT
GCACCCTTGAACGGTGACAAGACTGGCGGAACGTATGTGGGGTCTTTCCT
CGTCTTCTTCTGCCATAACGGATATGACATCACCGGTGGTGACTTCATGC
GAACCTGCGAGGCTGATCAGACATGGAGCGGGACTCAACCGACTTGTCAA
CGCAAAATATGTCCTGAGCTTCAGCCACCTCTGAACGGAAACAAGACGGG
AGACAACCTGTACGGTGACGTCGTGACGTTTACCTGTGCTGCTGGGTATG
ATTTGATTGGCAGTGACACAAGAACGTGTCAGGGGAACGCCCAGTGGAGT
GGAACTCAACCCTCCTGTTCTAGAGTGCAGTGTCCAGCCCTGAGCCCTAT
CCTTAATGGACAAATGAGTGGTGGAACGTTGTTCGGTCAAATGGTCAGCT
TTGCACTGGAATGTCCTGAGCTAGATGCACCCTTGAACGGTGACAAGACT
GGCGGAACGTATGTGGGGTCTTTCCTCGTCTTCTTCTGCCATAACGGATA
TGACATCACCGGTGGTGACTTCATGCGAACCTGCGAGGCTGATCAGACAT
GGAGCGGGACTCAACCGACTTGTCAACGCAAAATATGTCCTGAGCTTCAG
CCACCTCTGAACGGAAACAAGACGGGAGACAACCTGTACGGTGACGTCGT
GACGTTTACCTGTGCTGCTGGGTATGATTTGATTGGCAGTGACACAAGAA
CGTGTCAGGGGAACGCCCAGTGGAGTGGAACTCAACCCTCCTGTTCTAGA
GTGCAGTGTCCAGCCCTGAGCCCTATCCTTAATGGACAAATGAGTGGTGG
AACGTTGTTCGGTCAAATGGTCAGCTTT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97289gene:BL97289Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97289_cuf0transcript:BL97289_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97289_cuf0-E1BL97289_cuf0-E1-1564476830-409094Branchiostoma lanceolatumexon
BL97289_cuf0-E2BL97289_cuf0-E2-1564476830-409091Branchiostoma lanceolatumexon
BL97289_cuf0-E3BL97289_cuf0-E3-1564476830-409089Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000250genomeSc0000250:282086..283449 -
Properties
Property NameValue
Transcript idBL97289_cuf0
Biotypeprotein_coding