|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97278_cuf6 >transcript:BL97278_cuf6-protein ID=transcript:BL97278_cuf6-protein|Name=transcript:BL97278_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=209bp
PFSFTLNGVYTGFITSITCLPVIMAIVLLFQYSRPSNKGDRRVRDVETGG
PAEAPTQQGPAKGLPHWCKYVAWVLVVLSAVGSAVFTALYSLDWGKDKSE
RWLSAYFITFLVDMFLLQPAKILLLTFLTSSIRKPQAVKKIYEEKRGPVS
IDARTVSSQKARFSSNAFRMKRKMERLSMTSLANIKQARMRQRRDRRVVN
TFWDIMWXL Run BLAST on NCBI mRNA from alignment at Sc0000012:5044961..5047412+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97278_cuf6 ID=transcript:BL97278_cuf6|Name=transcript:BL97278_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=2452bp|location=Sequence derived from alignment at Sc0000012:5044961..5047412+ (Branchiostoma lanceolatum)
GGCCGTTCTCCTTCACCTTGAATGGAGTCTACACGGGGTTCATTACAAGC
ATTACCTGCCTCCCTGTCATCATGGCCATAGTCCTGCTGTTCCAGTACAG
CCGACCCAGCAACAAGGGCGACCGGAGGGTCCGAGATGTGGAGACGGGCG
GCCCAGCTGAGGCACCCACCCAGCAAGGACCAGCTAAGGGCCTGCCGCAC
TGGTGCAAGTACGTGGCCTGGGTGCTGGTGGTGCTGTCTGCTGTGGGGTC
AGCTGTCTTCACCGCGCTGTACAGTCTGGACTGGGGCAAGGACAAGTCCG
AAAGGTGGCTGTCTGCGTACTTCATCACCTTTTTGGTGGACATGTTCCTC
CTGCAACCCGCAAAGGTATTGATATGCTCTTTATTGAATTGTCTACTTAA
TAAGTAGGTATAATAGGATATCATTGTTACAGTAAGCATAATATCATTAC
ATGTTTGTTGCAGTTGCCTTCTTTTATGTTATATAAAACACCTTGAAGTG
CCACCTGTCACTACCATCCATGCACAATGTTGTTTGATAATCACGGTGAC
CTGACTTCCTCAGAACATGCTATATTCAAGCCACATCCTAAGGATCATAT
TGCCATTGTCAGTTATTGTTCCATTTGTGCTCAACTGCTCATAAATATTA
AACAATGTGTTCAGAAATCCTTACAACCAATGCTTTTATCTTGCAGATAT
TGCTTCTCACGTTCTTGACTTCATCCATTCGCAAGCCTCAAGCCGTGAAG
AAGATTTATGAAGAGAAACGGGGCCCCGTTTCCATTGATGCCAGGACAGT
GTCTTCACAAAAGGCACGCTTCAGCTGTAAGTTTTAGCACACATGTTTGT
AGAAAACAGCATTACATATCATACTACCATGAAGATGTAAACTATGCACA
TGATACTACATAGTGTATGACTTTTTGTTTGGAAACTGTTTGTTAGGCCA
CACCAATTTAATTTTTGGGTTAACAGATTTTTTTTGGTGAAATTTTAGCA
CGAGGACATCATGAAAACAGAAGGCTGGGGTGAAAACTTGCACCTGACCC
GTTCACTCCCTGAAACTGTGTGCACCAAAGTACAGACTTTCCTCTGAAAT
TCTGTTTTCATGTTTATTTTCCAATCTAGCATTTTTTTGGAGATTCTGTT
AAACAAGAAGTTAAATTGGTGTGGCCTTAGATGGTGAAAGAAAGCTATTT
TGTGCAGTGTGAGTGTGCTCCCAACCAGACACAAGTTCCAGACCCTGTTT
TGTGTACTGACATTTCCTCTTGCTTCAGTTTGTTAGTCCAGTTATCCGGG
TGGTGGGCTTAAGTTTTCACTTTTCTAACAATACATAATCATACATATAT
GTGACTGAATTGATATTTTTCATGCATACTATAGCCAATGCATTTCGCAT
GAAGAGGAAGATGGAACGTCTTTCGATGACATCCCTTGCCAACATCAAAC
AAGCGAGAATGAGGCAGCGCAGGGACAGGAGAGTTGTGAACACCTTTTGG
GACATCATGTGGTNGTTGTAAACACCTTTTGGGACATCATGTGGTTCTGC
TGTTGCCTCCTGCTTGTCATCGTCATCTCCAACGAGCACCACAACACCAC
AGAGGGTTTCTATCAGACACAGAGCATGACCAACACCTTTGTGCAGTCGA
TGGACGAGGTAAGTTCATTATGCTACATGTACATGTCGATCCTTGCTTGG
GAAGGTCTCTATATCTTTGTACAGTATCTGATCACTATAATCATAAATCA
CTGCATTGTTGAGACAAAATGTTACCTTTTAAGTCATTGGAAGGCCTTAA
TGCTGACATAATCAAGACTATGCATGATGTACAAAATGAATAATAAACTA
GTGGACGTACCAACTAATAAGTATCTAATACCAGCTCAGAAAAGGACAAA
AAATAGCCATGCCTTTAAGTATCAGACTTATCAACCTGGGATTGATGTGT
TAAAAAATTTGTATTTTCCTAGAACGATGGTAGAGTGGAACTTGTTGCCA
CCAAGTACAATTATAGAAGTATCCTCATTAGACAGCTTTAAACAATACAT
GCAGTTAGATATGTGAAGGTTAGACGTGACAGGTGTAGTATAACCAGCTG
CTGCCATGCCGAAGGGCGGTTATACCGGCTATATAGATACATATACACTT
AGCTTCTCAGATGGTGATTAGAACATGAATTCAGTGTGCACAGTTTGAAT
TTGTAATGAGAAATCTCTAAGGACAATTGTTATTTCTTAGTACAACTATA
TCACAAGGCTTTATTTCTCCACAGGTAAATGATCCTCTAACCTTCTGGTC
CTGGCTGTACGAGACCGCTCTGGGGAACTTCTACCCGGAGACTTCCTACA
AAGGTGACAAGCCCCGCTGGCAGGACAAGAGCTTCACGGCTGACATGCAG
TCTGTCCTGGTCTACCCACCTAGCCTGATCCAAGGTCGAGTTCAGACAGG
TT Coding sequence (CDS) from alignment at Sc0000012:5044961..5047412+ >transcript:BL97278_cuf6 ID=transcript:BL97278_cuf6|Name=transcript:BL97278_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=1890bp|location=Sequence derived from alignment at Sc0000012:5044961..5047412+ (Branchiostoma lanceolatum)
CCGTTCTCCTTCACCTTGAATGGAGTCTACACGGGGTTCATTACAAGCAT
TACCTGCCTCCCTGTCATCATGGCCATAGTCCTGCTGTTCCAGTACAGCC
GACCCAGCAACAAGGGCGACCGGAGGGTCCGAGATGTGGAGACGGGCGGC
CCAGCTGAGGCACCCACCCAGCAAGGACCAGCTAAGGGCCTGCCGCACTG
GTGCAAGTACGTGGCCTGGGTGCTGGTGGTGCTGTCTGCTGTGGGGTCAG
CTGTCTTCACCGCGCTGTACAGTCTGGACTGGGGCAAGGACAAGTCCGAA
AGGTGGCTGTCTGCGTACTTCATCACCTTTTTGGTGGACATGTTCCTCCT
GCAACCCGCAAAGATATTGCTTCTCACGTTCTTGACTTCATCCATTCGCA
AGCCTCAAGCCGTGAAGAAGATTTATGAAGAGAAACGGGGCCCCGTTTCC
ATTGATGCCAGGACAGTGTCTTCACAAAAGGCACGCTTCAGCTCCAATGC
ATTTCGCATGAAGAGGAAGATGGAACGTCTTTCGATGACATCCCTTGCCA
ACATCAAACAAGCGAGAATGAGGCAGCGCAGGGACAGGAGAGTTGTGAAC
ACCTTTTGGGACATCATGTGGTNGTTGTAACCGTTCTCCTTCACCTTGAA
TGGAGTCTACACGGGGTTCATTACAAGCATTACCTGCCTCCCTGTCATCA
TGGCCATAGTCCTGCTGTTCCAGTACAGCCGACCCAGCAACAAGGGCGAC
CGGAGGGTCCGAGATGTGGAGACGGGCGGCCCAGCTGAGGCACCCACCCA
GCAAGGACCAGCTAAGGGCCTGCCGCACTGGTGCAAGTACGTGGCCTGGG
TGCTGGTGGTGCTGTCTGCTGTGGGGTCAGCTGTCTTCACCGCGCTGTAC
AGTCTGGACTGGGGCAAGGACAAGTCCGAAAGGTGGCTGTCTGCGTACTT
CATCACCTTTTTGGTGGACATGTTCCTCCTGCAACCCGCAAAGATATTGC
TTCTCACGTTCTTGACTTCATCCATTCGCAAGCCTCAAGCCGTGAAGAAG
ATTTATGAAGAGAAACGGGGCCCCGTTTCCATTGATGCCAGGACAGTGTC
TTCACAAAAGGCACGCTTCAGCTCCAATGCATTTCGCATGAAGAGGAAGA
TGGAACGTCTTTCGATGACATCCCTTGCCAACATCAAACAAGCGAGAATG
AGGCAGCGCAGGGACAGGAGAGTTGTGAACACCTTTTGGGACATCATGTG
GTNGTTGTAACCGTTCTCCTTCACCTTGAATGGAGTCTACACGGGGTTCA
TTACAAGCATTACCTGCCTCCCTGTCATCATGGCCATAGTCCTGCTGTTC
CAGTACAGCCGACCCAGCAACAAGGGCGACCGGAGGGTCCGAGATGTGGA
GACGGGCGGCCCAGCTGAGGCACCCACCCAGCAAGGACCAGCTAAGGGCC
TGCCGCACTGGTGCAAGTACGTGGCCTGGGTGCTGGTGGTGCTGTCTGCT
GTGGGGTCAGCTGTCTTCACCGCGCTGTACAGTCTGGACTGGGGCAAGGA
CAAGTCCGAAAGGTGGCTGTCTGCGTACTTCATCACCTTTTTGGTGGACA
TGTTCCTCCTGCAACCCGCAAAGATATTGCTTCTCACGTTCTTGACTTCA
TCCATTCGCAAGCCTCAAGCCGTGAAGAAGATTTATGAAGAGAAACGGGG
CCCCGTTTCCATTGATGCCAGGACAGTGTCTTCACAAAAGGCACGCTTCA
GCTCCAATGCATTTCGCATGAAGAGGAAGATGGAACGTCTTTCGATGACA
TCCCTTGCCAACATCAAACAAGCGAGAATGAGGCAGCGCAGGGACAGGAG
AGTTGTGAACACCTTTTGGGACATCATGTGGTNGTTGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000012 | genome | Sc0000012:5044961..5047412 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97278_cuf6 |
| Biotype | protein_coding |
|
