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transcript:BL97270_cuf5 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97270_cuf5
Unique Nametranscript:BL97270_cuf5
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97270_cuf5

>transcript:BL97270_cuf5-protein ID=transcript:BL97270_cuf5-protein|Name=transcript:BL97270_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=153bp
ITSYGGKLRYTVDYEEDPNAPPGAENTISQQEDGPQVVIHGIDTAIILDI
PEVIAAVPARHEIDLVEFKWQLYQSLLSRTPTRAELMMILQNIQAILIKA
TYGRSMLRCKISNVSLDVGRERRSNDTGREPPTDSVEECMCPPGYTGLSC
HES
Run BLAST on NCBI

mRNA from alignment at Sc0000002:2057757..2059409-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97270_cuf5 ID=transcript:BL97270_cuf5|Name=transcript:BL97270_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=1653bp|location=Sequence derived from alignment at Sc0000002:2057757..2059409- (Branchiostoma lanceolatum)
GATCACGTCCTATGGAGGTAAGCTGAGGTACACAGTGGATTATGAAGAAG ACCCGAACGCCCCGCCCGGCGCCGAGAACACCATCAGCCAACAGGAGGAC GGTCCGCAGGTGGTCATCCACGGCATCGACACCGCCATCATACTGGACAT CCCAGAAGTCATCGCGGCCGTTCCCGCCAGACATGAGATCGATCTTGTGG AGGTACTCGTTGTTAACCTTCTTTTGACAATAGATGTTGGATTAAGGAGG CCGTATGGATGAGGGGGGATATAAACTTGGTTGCATTTGAGACAGCATTC TTCACACTGCAGCAGTGACACATACTCATAGCTGCAGTGTAAAGTAGAAC CAATTAGCATTGCCCTGAGGAAGGTGACAGACGGTTACCAAAACTTTGCT CTCTCATTTTATGCATCAGAAAGGAAAATGATACAATACCTGAAAACACA ATAACTGAAGGGTACAAACTCTAACTGAGGAGACTAAAAAAATGATGATG GTGTAACATTGATATAAATAAATCAAGCAACTGCATAATTTGTCTAAAAT CTACTGCTAAAAAGTCTAGATCAGTTTTTCTCACTTTTTCAGCAGCAGCT TTCTTGTCACTGAAGGAGATTGTTTTTTCTCACAGTTTAAATGGTAGCTA TACCAGTCCCTCCTCCATTTGCTGTTTGAGCAGTTCTTATACTGACAAAA CACTTTTCCTCCAGTTTTATTCACATTGTCGCTAGCAGTTTTCTTGTCAC TAATTAAAAGATTTGTTTTTTCTCTTGCAGTTTAAATGGCAGCTGTACCA GTCCCTCCTGAGTCGTACTCCGACCCGCGCTGAACTGATGATGATCCTAC AGAACATCCAGGCCATCCTCATCAAGGCTACGTACGGACGCAGCATGCTC AGATGCAAGTAAGTACAGCAGGCACTGTCAGTAGTTAGATATGTAGTATA ACTTGTAGTCTGGCTGTTTATCCCTTAACAGTTTACCAAACTCATTGTTG AAGAAACACAATACAAAAGTTATAAAGCAACTGGATAAATTTGGAAACAT TATCTGCTATCTTTCATTAGTGTGTGGAGATAGCAAATGCTACATGAAAC GTCTGACCATTTACAAAACATTTCCAGTTTCTTGAGCAACTTTTTTTTAC TGTGTATTTTCTTACCTGGATGTCTAACATATTGATGCATTGTTGAACAG GTTTAGAGTGTTTTATTGTTGTATTCATGTAATAATGTACTGTTGAGTGG TCTGTAACATCAGCTTGTCTGTCTGGCACTCCACTATGTATTGTCTCGTT GCAATTTTCAATAATTTAAAAGAAAGAATTAAAGAATGAAGAAGTTTTGA CTAATAGACTAATAAATGTTACTTTCATGGCCACAGGATCAGCAATGTCT CTTTGGACGTTGGCCGTGAACGCCGGTCCAACGACACTGGTCGGGAGCCC CCTACTGACAGTGTGGAGGAGTGCATGTGTCCCCCTGGGTACACTGGACT GTCGTGCCATGTAAGTCACTCTTCTCAACTCGATAATGAATGAATGAAGA CCTTTTTTGTGCATTTTTGCCACACTGTTCTAAGTACAGGTCACAACAAA ACTTGTTCAAAGTTAAGATGCAAGGTACACTGGGCTGTCATGCCATGAAA GTC

Coding sequence (CDS) from alignment at Sc0000002:2057757..2059409-

>transcript:BL97270_cuf5 ID=transcript:BL97270_cuf5|Name=transcript:BL97270_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=1836bp|location=Sequence derived from alignment at Sc0000002:2057757..2059409- (Branchiostoma lanceolatum)
ATCACGTCCTATGGAGGTAAGCTGAGGTACACAGTGGATTATGAAGAAGA
CCCGAACGCCCCGCCCGGCGCCGAGAACACCATCAGCCAACAGGAGGACG
GTCCGCAGGTGGTCATCCACGGCATCGACACCGCCATCATACTGGACATC
CCAGAAGTCATCGCGGCCGTTCCCGCCAGACATGAGATCGATCTTGTGGA
GTTTAAATGGCAGCTGTACCAGTCCCTCCTGAGTCGTACTCCGACCCGCG
CTGAACTGATGATGATCCTACAGAACATCCAGGCCATCCTCATCAAGGCT
ACGTACGGACGCAGCATGCTCAGATGCAAGATCAGCAATGTCTCTTTGGA
CGTTGGCCGTGAACGCCGGTCCAACGACACTGGTCGGGAGCCCCCTACTG
ACAGTGTGGAGGAGTGCATGTGTCCCCCTGGGTACACTGGGCTGTCATGC
CATGAAAGTATCACGTCCTATGGAGGTAAGCTGAGGTACACAGTGGATTA
TGAAGAAGACCCGAACGCCCCGCCCGGCGCCGAGAACACCATCAGCCAAC
AGGAGGACGGTCCGCAGGTGGTCATCCACGGCATCGACACCGCCATCATA
CTGGACATCCCAGAAGTCATCGCGGCCGTTCCCGCCAGACATGAGATCGA
TCTTGTGGAGTTTAAATGGCAGCTGTACCAGTCCCTCCTGAGTCGTACTC
CGACCCGCGCTGAACTGATGATGATCCTACAGAACATCCAGGCCATCCTC
ATCAAGGCTACGTACGGACGCAGCATGCTCAGATGCAAGATCAGCAATGT
CTCTTTGGACGTTGGCCGTGAACGCCGGTCCAACGACACTGGTCGGGAGC
CCCCTACTGACAGTGTGGAGGAGTGCATGTGTCCCCCTGGGTACACTGGG
CTGTCATGCCATGAAAGTATCACGTCCTATGGAGGTAAGCTGAGGTACAC
AGTGGATTATGAAGAAGACCCGAACGCCCCGCCCGGCGCCGAGAACACCA
TCAGCCAACAGGAGGACGGTCCGCAGGTGGTCATCCACGGCATCGACACC
GCCATCATACTGGACATCCCAGAAGTCATCGCGGCCGTTCCCGCCAGACA
TGAGATCGATCTTGTGGAGTTTAAATGGCAGCTGTACCAGTCCCTCCTGA
GTCGTACTCCGACCCGCGCTGAACTGATGATGATCCTACAGAACATCCAG
GCCATCCTCATCAAGGCTACGTACGGACGCAGCATGCTCAGATGCAAGAT
CAGCAATGTCTCTTTGGACGTTGGCCGTGAACGCCGGTCCAACGACACTG
GTCGGGAGCCCCCTACTGACAGTGTGGAGGAGTGCATGTGTCCCCCTGGG
TACACTGGGCTGTCATGCCATGAAAGTATCACGTCCTATGGAGGTAAGCT
GAGGTACACAGTGGATTATGAAGAAGACCCGAACGCCCCGCCCGGCGCCG
AGAACACCATCAGCCAACAGGAGGACGGTCCGCAGGTGGTCATCCACGGC
ATCGACACCGCCATCATACTGGACATCCCAGAAGTCATCGCGGCCGTTCC
CGCCAGACATGAGATCGATCTTGTGGAGTTTAAATGGCAGCTGTACCAGT
CCCTCCTGAGTCGTACTCCGACCCGCGCTGAACTGATGATGATCCTACAG
AACATCCAGGCCATCCTCATCAAGGCTACGTACGGACGCAGCATGCTCAG
ATGCAAGATCAGCAATGTCTCTTTGGACGTTGGCCGTGAACGCCGGTCCA
ACGACACTGGTCGGGAGCCCCCTACTGACAGTGTGGAGGAGTGCATGTGT
CCCCCTGGGTACACTGGGCTGTCATGCCATGAAAGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97270gene:BL97270Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97270_cuf5transcript:BL97270_cuf5-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97270_cuf5-E1BL97270_cuf5-E1-1564476830-33703Branchiostoma lanceolatumexon
BL97270_cuf5-E2BL97270_cuf5-E2-1564476830-33700Branchiostoma lanceolatumexon
BL97270_cuf5-E3BL97270_cuf5-E3-1564476830-33698Branchiostoma lanceolatumexon
BL97270_cuf5-E4BL97270_cuf5-E4-1564476830-33696Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000002genomeSc0000002:2057757..2059409 -
Properties
Property NameValue
Transcript idBL97270_cuf5
Biotypeprotein_coding