transcript:BL97261_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97261_cuf3
Unique Nametranscript:BL97261_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97261_cuf3

>transcript:BL97261_cuf3-protein ID=transcript:BL97261_cuf3-protein|Name=transcript:BL97261_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=167bp
VQHNETDGCSSSPCQNGASCCEDPEGGWYCDCPLGYEEPDCATFNDPCAG
ENPCMHGGTCQFDSTMPDYAYCQCPHGFTGQVCETTVPTDCTLDECQNGA
TCQMDSWGVWCVCPDGFTGPYCEFLFGDCQEDSCEQGDCHPVGCEGYHTC
ECEEGYSGSFCETSGSG
Run BLAST on NCBI

mRNA from alignment at Sc0000002:8105035..8107828+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97261_cuf3 ID=transcript:BL97261_cuf3|Name=transcript:BL97261_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=2794bp|location=Sequence derived from alignment at Sc0000002:8105035..8107828+ (Branchiostoma lanceolatum)
GTGCAGCACAATGAGACCGGTGAGTACATACCTCTTAATTTCGTATCTGT GATCTTTCAATTACTGCGATATATTTTAATTCATATTGAACTTAAACTTG TCTGTTCTCATACCTCCATCTATTCTTAATCTTGAATTGCTAACTATTTG TCATATCAAGTTACTGTTAACAAACGGCAAATTGGAGGAAGATACAGTGA TTTTCAGCTCTTCAGCACGCTAACCACCACCCCTCGCCCTCTCCGCAGAT GGTTGCAGCAGCTCGCCCTGTCAAAACGGCGCTTCCTGCTGCGAGGATCC CGAAGGAGGCTGGTACTGTGACTGTCCGCTGGGGTACGAAGGACCTGACT GTGCCACCTTTAACGACCCCTGCGCTGGAGAGAACCCCTGCATGCACGGG GGCACCTGTCAGTTCGACAGTACCATGCCTGACTACGCCTACTGCCATTG TCCACATGGATTCACAGGTAGGAATATCACTTAAGGCTGATATACATTGC TTATCTTTTGGACAGAAACAGATGAAAATGCTTGAAAAAAATATCACTTT TTAGTTCTGGCATGTTTTTGTATTGCTCTCCTTTTTTGACATACCGAGTT CGAGTGACCTTCAAGGCAAAAGGGAAAAGATGATCTGTGGCATATTGAAC TATCTATAAACAAAAAGAACAGCCCCTTCCAGCCTAGTATACCTTTTTGT TCTACTAATAGGTTTTTGGCCCATAACCGAGAGATCTTGGATTAGAACCC CTATAGGCCTAGCATTCCACCGATGCTGTGTCATCGGGAAAGGTACCGAT TTCCTCACTAGACCCAGGTGAAAAAAATGGATACCTGACTTCGGTTGGGG ATGTAAAAGGCCGCGGAAGGAGAGGATTGGGCAACAAATTCGGATAACAA CCCACTGCCCCTAAAGCCTCAATATGCTATGGGACTACGTTTACGTACAT ACTTACTGATGGTAAAAAAATGTTTGCCCGAATTAGGTAAAGTGTGTGAG ACCACCGTACCCACCGACTGTACTTTGGGCGAGTGTCAGAACGGGGCAAC CTGTCAGATGGACTCCTGGGGAAGTGGAGACGTCTGGTGTGTCTGCCCGG AGGGATTCACGGGGCCGTACTGCGAGTTTCTGTTCGGAGACTGCCAAGAA GACAGCTGTGAGCAGGGAGACTGTCACCCGGTGGGCTGTGAGGGATACCA CACGTGCGAGTGTGAGGAAGGTATGTACCATGTATCAGGTCGATACAATA GTGTTTTTACACCGCTGGTGTTTTTCTTTGTTATTTTTTTGCGCGCTCTC CTATTGTTCCTGTCTGAATATTTTCCAGGGCTCCTGATCTCCAGACAGAC ACTTACTACAGGCAAGCTAAATTTGCTGGACGTTCATTGCTTACAGAATC TAATCCAAGTATGGTAATTTTTGTAGGTTATTCGGGGACATTCTGCGAGG TGCACGATGATAGTCACTACAACGATACCGGTGAGTACATATACCTGCTT TCTTAATATCTGTGATATTTTCAAAACCAGAAAAGATTGATTTTTAGCTC TCCAGCATCCCAACAACCCATTCCCTTTATCCATCCGCAGATGGGTGCAG CAGCTCGCCCTGTCAAAACGGCGCTTCCTGCTGCGAGGATCCCGAAGGAG GCTGGTACTGTGACTGTCCGCTGGGGTACGAGGAACCGGACTGTGCCACC TTTAACGACCCCTGCGCTGGAGAGAACCCCTGCATGCACGGGGGCACCTG TCAGTTCGACAGTACCATGCCTGACTACGCCTACTGCCAGTGTCCACATG GATTCACAGGTAGGAACATCACTTAAGGCTGATATACATTGCTTATCTTT TGGACAGAAACAGATGAAAATGGTTGAAAAAGATATCACTTTTTAGTTCT GGCATGTTTTTGTATTGCTCTCCTTTTTTTGACATACCGAGTTCGAGTGA CCTTCAAGGCAAGAGGGAAAAGATGATCTGTGGCATATTGAACTATCTAT AAACAAAAAGAACAGCCCCTTCCAGCCTAGTATACCTTTTTGTTCTACTA ATAGGTTTTAGGCCCAGAACCGGGAGATCTTGGATAAGAACCCCTATAGG CCTAGCATTCCACCGATGCTATGTCATCGGGAAAGGTACCGATTTCCTCA CTAGACCCAGGTGAAAAAAAATGGATACCTGACTTCAGTTGGGGATGTAA AAGGCTGCAGAAGGAGAGGATTGGGCTCCAACTTCGGATAACAACCCACT GCCCCTAAAGCCTCAATATGCTATGGGACTACGTTTACCTACCTACTTAC TGATGGAATAAACATGTTTGTCTGATTTAGGTCAAGTGTGTGAGACCACC GTACCCACCGACTGTACTTTGGACGAATGTCAGAACGGGGCAACCTGTCA GATGGACTCGTGGGGAGTCTGGTGTGTTTGCCCGGACGGTTTCACGGGGC CCTACTGCGAGTTTCTGTTCGGGGACTGCCAAGAAGACAGCTGTGAGCAG GGAGACTGTCACCCGGTGGGCTGTGAGGGATATCACACCTGCGAGTGTGA GGAAGGTATGTACCATGTACCATGTCGATACAATAGTGTTTTTCGACCGC TGGTGTTTTTCTATGTTAAACTTTTTGCACGCTCTCCTGATGTTCCTGTC TGAATATTTTCCAGGGCTCCTTATCTCCAGACAGACACTTACTACAGGCA AGCTAAATTTGCTGGGCATTCGTTGAATCTAATCCAAGTATGGCAATTTT TGCAGGTTATTCGGGATCATTCTGCGAGACAAGCGGTTCCGGGT

Coding sequence (CDS) from alignment at Sc0000002:8105035..8107828+

>transcript:BL97261_cuf3 ID=transcript:BL97261_cuf3|Name=transcript:BL97261_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=2004bp|location=Sequence derived from alignment at Sc0000002:8105035..8107828+ (Branchiostoma lanceolatum)
GTGCAGCACAATGAGACCGATGGGTGCAGCAGCTCGCCCTGTCAAAACGG
CGCTTCCTGCTGCGAGGATCCCGAAGGAGGCTGGTACTGTGACTGTCCGC
TGGGGTACGAGGAACCGGACTGTGCCACCTTTAACGACCCCTGCGCTGGA
GAGAACCCCTGCATGCACGGGGGCACCTGTCAGTTCGACAGTACCATGCC
TGACTACGCCTACTGCCAGTGTCCACATGGATTCACAGGTCAAGTGTGTG
AGACCACCGTACCCACCGACTGTACTTTGGACGAATGTCAGAACGGGGCA
ACCTGTCAGATGGACTCGTGGGGAGTCTGGTGTGTTTGCCCGGACGGTTT
CACGGGGCCCTACTGCGAGTTTCTGTTCGGGGACTGCCAAGAAGACAGCT
GTGAGCAGGGAGACTGTCACCCGGTGGGCTGTGAGGGATATCACACCTGC
GAGTGTGAGGAAGGTTATTCGGGATCATTCTGCGAGACAAGCGGTTCCGG
GGTGCAGCACAATGAGACCGATGGGTGCAGCAGCTCGCCCTGTCAAAACG
GCGCTTCCTGCTGCGAGGATCCCGAAGGAGGCTGGTACTGTGACTGTCCG
CTGGGGTACGAGGAACCGGACTGTGCCACCTTTAACGACCCCTGCGCTGG
AGAGAACCCCTGCATGCACGGGGGCACCTGTCAGTTCGACAGTACCATGC
CTGACTACGCCTACTGCCAGTGTCCACATGGATTCACAGGTCAAGTGTGT
GAGACCACCGTACCCACCGACTGTACTTTGGACGAATGTCAGAACGGGGC
AACCTGTCAGATGGACTCGTGGGGAGTCTGGTGTGTTTGCCCGGACGGTT
TCACGGGGCCCTACTGCGAGTTTCTGTTCGGGGACTGCCAAGAAGACAGC
TGTGAGCAGGGAGACTGTCACCCGGTGGGCTGTGAGGGATATCACACCTG
CGAGTGTGAGGAAGGTTATTCGGGATCATTCTGCGAGACAAGCGGTTCCG
GGGTGCAGCACAATGAGACCGATGGGTGCAGCAGCTCGCCCTGTCAAAAC
GGCGCTTCCTGCTGCGAGGATCCCGAAGGAGGCTGGTACTGTGACTGTCC
GCTGGGGTACGAGGAACCGGACTGTGCCACCTTTAACGACCCCTGCGCTG
GAGAGAACCCCTGCATGCACGGGGGCACCTGTCAGTTCGACAGTACCATG
CCTGACTACGCCTACTGCCAGTGTCCACATGGATTCACAGGTCAAGTGTG
TGAGACCACCGTACCCACCGACTGTACTTTGGACGAATGTCAGAACGGGG
CAACCTGTCAGATGGACTCGTGGGGAGTCTGGTGTGTTTGCCCGGACGGT
TTCACGGGGCCCTACTGCGAGTTTCTGTTCGGGGACTGCCAAGAAGACAG
CTGTGAGCAGGGAGACTGTCACCCGGTGGGCTGTGAGGGATATCACACCT
GCGAGTGTGAGGAAGGTTATTCGGGATCATTCTGCGAGACAAGCGGTTCC
GGGGTGCAGCACAATGAGACCGATGGGTGCAGCAGCTCGCCCTGTCAAAA
CGGCGCTTCCTGCTGCGAGGATCCCGAAGGAGGCTGGTACTGTGACTGTC
CGCTGGGGTACGAGGAACCGGACTGTGCCACCTTTAACGACCCCTGCGCT
GGAGAGAACCCCTGCATGCACGGGGGCACCTGTCAGTTCGACAGTACCAT
GCCTGACTACGCCTACTGCCAGTGTCCACATGGATTCACAGGTCAAGTGT
GTGAGACCACCGTACCCACCGACTGTACTTTGGACGAATGTCAGAACGGG
GCAACCTGTCAGATGGACTCGTGGGGAGTCTGGTGTGTTTGCCCGGACGG
TTTCACGGGGCCCTACTGCGAGTTTCTGTTCGGGGACTGCCAAGAAGACA
GCTGTGAGCAGGGAGACTGTCACCCGGTGGGCTGTGAGGGATATCACACC
TGCGAGTGTGAGGAAGGTTATTCGGGATCATTCTGCGAGACAAGCGGTTC
CGGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97261gene:BL97261Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97261_cuf3transcript:BL97261_cuf3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97261_cuf3-E1BL97261_cuf3-E1-1564476830-39247Branchiostoma lanceolatumexon
BL97261_cuf3-E2BL97261_cuf3-E2-1564476830-39249Branchiostoma lanceolatumexon
BL97261_cuf3-E3BL97261_cuf3-E3-1564476830-39251Branchiostoma lanceolatumexon
BL97261_cuf3-E4BL97261_cuf3-E4-1564476830-39254Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000002genomeSc0000002:8105035..8107828 +
Properties
Property NameValue
Transcript idBL97261_cuf3
Biotypeprotein_coding