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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97258_cuf4 >transcript:BL97258_cuf4-protein ID=transcript:BL97258_cuf4-protein|Name=transcript:BL97258_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=307bp
LNGASAATCRADRTWSELVPTCTDINECTRNMCHSLATCTNTIGSFRCTC
ISGYTGDGLTAGTGCTDINECNATPKPCHDQAVCTNIPGSFTCNCTVGYT
GNGLAGANGCTELPCDRIDLTGWDLLFLVDSADLGGGQQTFVDDVRSFTR
ETIDELLNSDGVTRIGLVQYNDNQQTAFNLNQYQTKADILTAVDNINYLG
GGTYTGRAIHYARQVSFSPANGNRANRPDAMIVITDGVSLDPITYGSTAS
RHQGITVFAIGIGNRIDRATLEQIAENDQKVLQVSDTQESRDQAIRSLKG
WLCRGTC Run BLAST on NCBI mRNA from alignment at Sc0000002:3976424..3980214+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97258_cuf4 ID=transcript:BL97258_cuf4|Name=transcript:BL97258_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=3791bp|location=Sequence derived from alignment at Sc0000002:3976424..3980214+ (Branchiostoma lanceolatum)
CTGAACGGGGCCTCCGCTGCGACCTGCAGGGCTGACCGAACCTGGAGTGA
GCTTGTCCCAACTTGTACAGGTATGCAGTCAGCAACAGATAAAAAAAAGT
GTAGGGTACACTAAGGTACACCCATATACGTCGCGCGATCATCGTACGAT
TGCTAACTTAGGGCTTTTTTGGAACAGCCATGCATGTGCCCTGCAAAATT
CAGCTGTCTTCCTACAGAAAAAGCTGTGTTTTTTTCTTGTCGGTGGTTGA
TTCTGTCACAGCCTGCGTCAAAATCCTATGGCATCAACATCGTACCACGC
CCTTAAGCCCCCCTCTCACTGGACCCGCGGCACGCTGGCGGCGTCACTGC
GTCCTAAACTAGATTTGTGTTACCGGTAACCTTCACTTTGGGAATATAAT
TGAAAACGTGCAAGTATGACCAAAAGACAACAAAACACACAAAGCTAAAA
AAGATTCGTTTTTTGTTGATGAGATTCGTTGAGTGCTTTGTCAATTCGGT
CGACTGCAGCGACGCCGCCAGCGTGCCGCGGGTCCAGTGAGAGGGGGGCT
AACATGTGGCGTTAATGATGATAATGATAATGAGTCATGGCCTGAATATC
GTAGTTAGTACAATCCTCTTGAAAACGTTTTACCAACTTTCAATGGGAGC
TATGGAAAGCAATTTAAATCAATTTATCTAATTTTTATCTGTCCTAACCA
CAGTTAAAGTTGTATATTAATCATAGAACCCATGTTTCATAGTAATTATG
TATCTATCAACTTTGTGTATGTCAATAGTTGTATAGCACTGACTTAATTC
GATTTTAGGAAGAAGTCTCAAGTCGTAATGTTTCATATATTGCCTGTTTT
CGTAAAACATCACATTCATGAAGTTTCTTTATCTGTCAACCGATATCCTA
CACATGACTTTTAGTATTTAACTTCGGAATTTAAAAAAAAATCATTGCAT
TTCACAAAATGAATAACACATGATACAAACAAGAGAAAATCAAAGTAGAG
GAAAATTAACATAAGCCACGGATAAAAACAAAACAAAAGATAAGGTGGAA
ACAGAAATGGACTACTTTGTAAATATAAGTAATAGACTTCTATACAAAAT
GATAGTAATAACAGCCTCATTGGCAAATAAATATAACAAAATCAGTATCA
ACCAAAGATAACAAAATATTGAAATTAAACAGAACTTATGTTGACAAATT
AATATGAAAAGTCCATATCATCAGAATCATGAGAACATAAGTAACAAAAC
TTCGGAATTATAATTTTTACAGACATCAATGAGTGCACACGGAACATGTG
TCATAGCCTGGCTACATGCACCAATACTATTGGTTCATTTCGGTGTACAT
GCATCAGTGGATATACCGGAGATGGATTGACAGCTGGTACTGGATGCACA
GGTTAGTTGGAACTGCAAGAACGTTATGATGTTATGTTTCCAACATGGCC
ATATCTATCTATCTATAGCTATATCTATCTATCTACATCTATCTTTTTAT
GTATATATATATATATATATATATATATATATATATATATATATATATAT
ATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATCTAACG
CAATGCAATGCACAGAGCTAGGTTCTCATAAATTAACCAGTGACCCCCAG
ATGGATGAACAACTGAACTATTAAGAAAAAATGCTCCATATGGCTTGTGT
GGTGGCCGCCATCTTGAATTGTGACGAGTTGTGACGTCACAGGGTCGCTA
TGTTGGATGTGACAATTTTATTGGGGGTGTTTTTTTGGGTCGTTAATGTT
GGGTGTGACCATTTTGAGGGATGAGTGTTTTTTCTTGCTAGTTTCCAAGC
AGACGTTCTCTCTTTTTTAACAAATCAGCACACGACTATCACACATTCAA
CTCAAATAAAAAGAAAAATTCAATACCAATTCATATCAATTTCATAAAAA
GACTCCGTAATCGTTTAATTAACATAGAAAACCTGAAGTAAATGTAGCAC
AAATACTTAACTCTAGTTTTATTGGGATTTCAACAGATATCAATGAGTGT
AACGCCACACCAAAACCATGCCACGATCAGGCTGTTTGCACCAACATACC
AGGATCGTTCACCTGCAACTGCACGGTGGGCTACACAGGAAATGGATTGG
CAGGTGCTAATGGATGCACAGGTTAGTTGGAACTGCAAGAACGTTATAAT
GTTATGTTTCCGACATGGCCATATCTATCTATCTATCTGCACAGGTATTT
GAATTGAAAACACCTTTCTTACCATGTTATTCTTAACAAATTGATACTGG
TAGAAATGGAGTGCACCGTTCCCATCGAACACCACCATATCGAACATATG
GAACCCCCTGTTCTATTTCGAACACCTCCTCCAAAAGCTGCGTTAGTAGG
ACAGAAATGGCACGTGTTAGGCAAGATACGTATGTCTGTGACAGGAACGC
GTACAGTCTATTAAGTCCCATTAACAAAATGTTCGGGAGTGCCTGAGGCT
GGTGGTACCGTTTGTACTTAAAACTAAAAAAATAAATTTCATCGCAACTA
CCAACGACTCCTTGGACCTAATTCAAAAGCACATGGCAGTTGTAACTTTA
CTAGCCTCTACCAGGCTCCAAACGTGGCTTGAAAGAGTCGAACTCGGCAC
AAAAGACAGATAACATACCAGAGGAGTTGGCCAGCCGATACATGCAGTTT
GCCACTCGTCTGGAGCCTGGTAGAGGCTATAGGTATAACGTTACGTCCAT
TTACCCTTTTGTTTCTTAACTGGTTTCCGTTGTGACCTTTTTTGCTGGCA
GAACTTCCCTGCGATCGCATTGATCTGACGGGATGGGACCTGCTCTTCCT
TGTGGACAGCGCGGATCTGGGCGGTGGACAGCAGACCTTCGTCGATGACG
TTAGGAGCTTCACCAGAGAGACCATCGACGAGCTATTAAACAGCGACGGC
GTTACCCGCATAGGGCTTGTGCAGTACAACGACAACCAGCAGACGGCGTT
CAATCTGAACCAGTACCAGACCAAGGCTGACATCCTCACCGCCGTGGATA
ATATTAATTATCTAGGCGGAGGCACCTACACGGGAAGAGCAATCCACTAT
GCTCGACAGGTGCGTTTCGACAATGTATCCACGTACTTAGGCCAATATAT
ATGTAGCGCTTAAGAAAAGAGGGAATGTATTGTAAAAGTCAGATACGTTT
AACGTATGTTGTGCCAATTGATACGCCATTTACAACCACAGGTCTCTTTT
TCGCCTGCTAATGGAAACCGTGCCAACCGACCCGATGCGATGATAGTCAT
CACAGACGGCGTGTCTCTTGACCCTATCACGTACGGCTCGACGGCTTCCA
GACACCAGGGCATCACGGTCTTTGCCATCGGCATTGGAAACAGAATAGAC
AGGGCCACGTTGGAGCAAATCGCCGAAAATGACCAAAAAGTTCTCCAGGT
ATCGGATACACAAGAATCTCGCGATCAGGCCATTAGATCGTTGAAGGGAT
GGCTGTGCAGAGGTACGTGTTAGTCAAATGCCCACTTCTTACGTTGCCCT
TCTTTTGTTGAAATTCTGTTTGCGCAGTATAGTGTCATAGTCTGTATAGA
CTGACTGACAGTAGAATACGTTAACGTTCGCAGGATTCTTGTATTGATTT
AACCATCATTTGAGGCTTATATTGATTTGTGTTGACACTTCTCATCATAC
ATACAAACTATATATATTTTCAGCTGACTTATTACTTAAAC Coding sequence (CDS) from alignment at Sc0000002:3976424..3980214+ >transcript:BL97258_cuf4 ID=transcript:BL97258_cuf4|Name=transcript:BL97258_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=4620bp|location=Sequence derived from alignment at Sc0000002:3976424..3980214+ (Branchiostoma lanceolatum)
CTGAACGGGGCCTCCGCTGCGACCTGCAGGGCTGACCGAACCTGGAGTGA
GCTTGTCCCAACTTGTACAGACATCAATGAGTGCACACGGAACATGTGTC
ATAGCCTGGCTACATGCACCAATACTATTGGTTCATTTCGGTGTACATGC
ATCAGTGGATATACCGGAGATGGATTGACAGCTGGTACTGGATGCACAGA
TATCAATGAGTGTAACGCCACACCAAAACCATGCCACGATCAGGCTGTTT
GCACCAACATACCAGGATCGTTCACCTGCAACTGCACGGTGGGCTACACA
GGAAATGGATTGGCAGGTGCTAATGGATGCACAGAACTTCCCTGCGATCG
CATTGATCTGACGGGATGGGACCTGCTCTTCCTTGTGGACAGCGCGGATC
TGGGCGGTGGACAGCAGACCTTCGTCGATGACGTTAGGAGCTTCACCAGA
GAGACCATCGACGAGCTATTAAACAGCGACGGCGTTACCCGCATAGGGCT
TGTGCAGTACAACGACAACCAGCAGACGGCGTTCAATCTGAACCAGTACC
AGACCAAGGCTGACATCCTCACCGCCGTGGATAATATTAATTATCTAGGC
GGAGGCACCTACACGGGAAGAGCAATCCACTATGCTCGACAGGTCTCTTT
TTCGCCTGCTAATGGAAACCGTGCCAACCGACCCGATGCGATGATAGTCA
TCACAGACGGCGTGTCTCTTGACCCTATCACGTACGGCTCGACGGCTTCC
AGACACCAGGGCATCACGGTCTTTGCCATCGGCATTGGAAACAGAATAGA
CAGGGCCACGTTGGAGCAAATCGCCGAAAATGACCAAAAAGTTCTCCAGG
TATCGGATACACAAGAATCTCGCGATCAGGCCATTAGATCGTTGAAGGGA
TGGCTGTGCAGAGGTACGTGTTAGCTGAACGGGGCCTCCGCTGCGACCTG
CAGGGCTGACCGAACCTGGAGTGAGCTTGTCCCAACTTGTACAGACATCA
ATGAGTGCACACGGAACATGTGTCATAGCCTGGCTACATGCACCAATACT
ATTGGTTCATTTCGGTGTACATGCATCAGTGGATATACCGGAGATGGATT
GACAGCTGGTACTGGATGCACAGATATCAATGAGTGTAACGCCACACCAA
AACCATGCCACGATCAGGCTGTTTGCACCAACATACCAGGATCGTTCACC
TGCAACTGCACGGTGGGCTACACAGGAAATGGATTGGCAGGTGCTAATGG
ATGCACAGAACTTCCCTGCGATCGCATTGATCTGACGGGATGGGACCTGC
TCTTCCTTGTGGACAGCGCGGATCTGGGCGGTGGACAGCAGACCTTCGTC
GATGACGTTAGGAGCTTCACCAGAGAGACCATCGACGAGCTATTAAACAG
CGACGGCGTTACCCGCATAGGGCTTGTGCAGTACAACGACAACCAGCAGA
CGGCGTTCAATCTGAACCAGTACCAGACCAAGGCTGACATCCTCACCGCC
GTGGATAATATTAATTATCTAGGCGGAGGCACCTACACGGGAAGAGCAAT
CCACTATGCTCGACAGGTCTCTTTTTCGCCTGCTAATGGAAACCGTGCCA
ACCGACCCGATGCGATGATAGTCATCACAGACGGCGTGTCTCTTGACCCT
ATCACGTACGGCTCGACGGCTTCCAGACACCAGGGCATCACGGTCTTTGC
CATCGGCATTGGAAACAGAATAGACAGGGCCACGTTGGAGCAAATCGCCG
AAAATGACCAAAAAGTTCTCCAGGTATCGGATACACAAGAATCTCGCGAT
CAGGCCATTAGATCGTTGAAGGGATGGCTGTGCAGAGGTACGTGTTAGCT
GAACGGGGCCTCCGCTGCGACCTGCAGGGCTGACCGAACCTGGAGTGAGC
TTGTCCCAACTTGTACAGACATCAATGAGTGCACACGGAACATGTGTCAT
AGCCTGGCTACATGCACCAATACTATTGGTTCATTTCGGTGTACATGCAT
CAGTGGATATACCGGAGATGGATTGACAGCTGGTACTGGATGCACAGATA
TCAATGAGTGTAACGCCACACCAAAACCATGCCACGATCAGGCTGTTTGC
ACCAACATACCAGGATCGTTCACCTGCAACTGCACGGTGGGCTACACAGG
AAATGGATTGGCAGGTGCTAATGGATGCACAGAACTTCCCTGCGATCGCA
TTGATCTGACGGGATGGGACCTGCTCTTCCTTGTGGACAGCGCGGATCTG
GGCGGTGGACAGCAGACCTTCGTCGATGACGTTAGGAGCTTCACCAGAGA
GACCATCGACGAGCTATTAAACAGCGACGGCGTTACCCGCATAGGGCTTG
TGCAGTACAACGACAACCAGCAGACGGCGTTCAATCTGAACCAGTACCAG
ACCAAGGCTGACATCCTCACCGCCGTGGATAATATTAATTATCTAGGCGG
AGGCACCTACACGGGAAGAGCAATCCACTATGCTCGACAGGTCTCTTTTT
CGCCTGCTAATGGAAACCGTGCCAACCGACCCGATGCGATGATAGTCATC
ACAGACGGCGTGTCTCTTGACCCTATCACGTACGGCTCGACGGCTTCCAG
ACACCAGGGCATCACGGTCTTTGCCATCGGCATTGGAAACAGAATAGACA
GGGCCACGTTGGAGCAAATCGCCGAAAATGACCAAAAAGTTCTCCAGGTA
TCGGATACACAAGAATCTCGCGATCAGGCCATTAGATCGTTGAAGGGATG
GCTGTGCAGAGGTACGTGTTAGCTGAACGGGGCCTCCGCTGCGACCTGCA
GGGCTGACCGAACCTGGAGTGAGCTTGTCCCAACTTGTACAGACATCAAT
GAGTGCACACGGAACATGTGTCATAGCCTGGCTACATGCACCAATACTAT
TGGTTCATTTCGGTGTACATGCATCAGTGGATATACCGGAGATGGATTGA
CAGCTGGTACTGGATGCACAGATATCAATGAGTGTAACGCCACACCAAAA
CCATGCCACGATCAGGCTGTTTGCACCAACATACCAGGATCGTTCACCTG
CAACTGCACGGTGGGCTACACAGGAAATGGATTGGCAGGTGCTAATGGAT
GCACAGAACTTCCCTGCGATCGCATTGATCTGACGGGATGGGACCTGCTC
TTCCTTGTGGACAGCGCGGATCTGGGCGGTGGACAGCAGACCTTCGTCGA
TGACGTTAGGAGCTTCACCAGAGAGACCATCGACGAGCTATTAAACAGCG
ACGGCGTTACCCGCATAGGGCTTGTGCAGTACAACGACAACCAGCAGACG
GCGTTCAATCTGAACCAGTACCAGACCAAGGCTGACATCCTCACCGCCGT
GGATAATATTAATTATCTAGGCGGAGGCACCTACACGGGAAGAGCAATCC
ACTATGCTCGACAGGTCTCTTTTTCGCCTGCTAATGGAAACCGTGCCAAC
CGACCCGATGCGATGATAGTCATCACAGACGGCGTGTCTCTTGACCCTAT
CACGTACGGCTCGACGGCTTCCAGACACCAGGGCATCACGGTCTTTGCCA
TCGGCATTGGAAACAGAATAGACAGGGCCACGTTGGAGCAAATCGCCGAA
AATGACCAAAAAGTTCTCCAGGTATCGGATACACAAGAATCTCGCGATCA
GGCCATTAGATCGTTGAAGGGATGGCTGTGCAGAGGTACGTGTTAGCTGA
ACGGGGCCTCCGCTGCGACCTGCAGGGCTGACCGAACCTGGAGTGAGCTT
GTCCCAACTTGTACAGACATCAATGAGTGCACACGGAACATGTGTCATAG
CCTGGCTACATGCACCAATACTATTGGTTCATTTCGGTGTACATGCATCA
GTGGATATACCGGAGATGGATTGACAGCTGGTACTGGATGCACAGATATC
AATGAGTGTAACGCCACACCAAAACCATGCCACGATCAGGCTGTTTGCAC
CAACATACCAGGATCGTTCACCTGCAACTGCACGGTGGGCTACACAGGAA
ATGGATTGGCAGGTGCTAATGGATGCACAGAACTTCCCTGCGATCGCATT
GATCTGACGGGATGGGACCTGCTCTTCCTTGTGGACAGCGCGGATCTGGG
CGGTGGACAGCAGACCTTCGTCGATGACGTTAGGAGCTTCACCAGAGAGA
CCATCGACGAGCTATTAAACAGCGACGGCGTTACCCGCATAGGGCTTGTG
CAGTACAACGACAACCAGCAGACGGCGTTCAATCTGAACCAGTACCAGAC
CAAGGCTGACATCCTCACCGCCGTGGATAATATTAATTATCTAGGCGGAG
GCACCTACACGGGAAGAGCAATCCACTATGCTCGACAGGTCTCTTTTTCG
CCTGCTAATGGAAACCGTGCCAACCGACCCGATGCGATGATAGTCATCAC
AGACGGCGTGTCTCTTGACCCTATCACGTACGGCTCGACGGCTTCCAGAC
ACCAGGGCATCACGGTCTTTGCCATCGGCATTGGAAACAGAATAGACAGG
GCCACGTTGGAGCAAATCGCCGAAAATGACCAAAAAGTTCTCCAGGTATC
GGATACACAAGAATCTCGCGATCAGGCCATTAGATCGTTGAAGGGATGGC
TGTGCAGAGGTACGTGTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000002 | genome | Sc0000002:3976424..3980214 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97258_cuf4 |
| Biotype | protein_coding |
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