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transcript:BL97258_cuf4 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97258_cuf4
Unique Nametranscript:BL97258_cuf4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97258_cuf4

>transcript:BL97258_cuf4-protein ID=transcript:BL97258_cuf4-protein|Name=transcript:BL97258_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=307bp
LNGASAATCRADRTWSELVPTCTDINECTRNMCHSLATCTNTIGSFRCTC
ISGYTGDGLTAGTGCTDINECNATPKPCHDQAVCTNIPGSFTCNCTVGYT
GNGLAGANGCTELPCDRIDLTGWDLLFLVDSADLGGGQQTFVDDVRSFTR
ETIDELLNSDGVTRIGLVQYNDNQQTAFNLNQYQTKADILTAVDNINYLG
GGTYTGRAIHYARQVSFSPANGNRANRPDAMIVITDGVSLDPITYGSTAS
RHQGITVFAIGIGNRIDRATLEQIAENDQKVLQVSDTQESRDQAIRSLKG
WLCRGTC
Run BLAST on NCBI

mRNA from alignment at Sc0000002:3976424..3980214+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97258_cuf4 ID=transcript:BL97258_cuf4|Name=transcript:BL97258_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=3791bp|location=Sequence derived from alignment at Sc0000002:3976424..3980214+ (Branchiostoma lanceolatum)
CTGAACGGGGCCTCCGCTGCGACCTGCAGGGCTGACCGAACCTGGAGTGA GCTTGTCCCAACTTGTACAGGTATGCAGTCAGCAACAGATAAAAAAAAGT GTAGGGTACACTAAGGTACACCCATATACGTCGCGCGATCATCGTACGAT TGCTAACTTAGGGCTTTTTTGGAACAGCCATGCATGTGCCCTGCAAAATT CAGCTGTCTTCCTACAGAAAAAGCTGTGTTTTTTTCTTGTCGGTGGTTGA TTCTGTCACAGCCTGCGTCAAAATCCTATGGCATCAACATCGTACCACGC CCTTAAGCCCCCCTCTCACTGGACCCGCGGCACGCTGGCGGCGTCACTGC GTCCTAAACTAGATTTGTGTTACCGGTAACCTTCACTTTGGGAATATAAT TGAAAACGTGCAAGTATGACCAAAAGACAACAAAACACACAAAGCTAAAA AAGATTCGTTTTTTGTTGATGAGATTCGTTGAGTGCTTTGTCAATTCGGT CGACTGCAGCGACGCCGCCAGCGTGCCGCGGGTCCAGTGAGAGGGGGGCT AACATGTGGCGTTAATGATGATAATGATAATGAGTCATGGCCTGAATATC GTAGTTAGTACAATCCTCTTGAAAACGTTTTACCAACTTTCAATGGGAGC TATGGAAAGCAATTTAAATCAATTTATCTAATTTTTATCTGTCCTAACCA CAGTTAAAGTTGTATATTAATCATAGAACCCATGTTTCATAGTAATTATG TATCTATCAACTTTGTGTATGTCAATAGTTGTATAGCACTGACTTAATTC GATTTTAGGAAGAAGTCTCAAGTCGTAATGTTTCATATATTGCCTGTTTT CGTAAAACATCACATTCATGAAGTTTCTTTATCTGTCAACCGATATCCTA CACATGACTTTTAGTATTTAACTTCGGAATTTAAAAAAAAATCATTGCAT TTCACAAAATGAATAACACATGATACAAACAAGAGAAAATCAAAGTAGAG GAAAATTAACATAAGCCACGGATAAAAACAAAACAAAAGATAAGGTGGAA ACAGAAATGGACTACTTTGTAAATATAAGTAATAGACTTCTATACAAAAT GATAGTAATAACAGCCTCATTGGCAAATAAATATAACAAAATCAGTATCA ACCAAAGATAACAAAATATTGAAATTAAACAGAACTTATGTTGACAAATT AATATGAAAAGTCCATATCATCAGAATCATGAGAACATAAGTAACAAAAC TTCGGAATTATAATTTTTACAGACATCAATGAGTGCACACGGAACATGTG TCATAGCCTGGCTACATGCACCAATACTATTGGTTCATTTCGGTGTACAT GCATCAGTGGATATACCGGAGATGGATTGACAGCTGGTACTGGATGCACA GGTTAGTTGGAACTGCAAGAACGTTATGATGTTATGTTTCCAACATGGCC ATATCTATCTATCTATAGCTATATCTATCTATCTACATCTATCTTTTTAT GTATATATATATATATATATATATATATATATATATATATATATATATAT ATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATCTAACG CAATGCAATGCACAGAGCTAGGTTCTCATAAATTAACCAGTGACCCCCAG ATGGATGAACAACTGAACTATTAAGAAAAAATGCTCCATATGGCTTGTGT GGTGGCCGCCATCTTGAATTGTGACGAGTTGTGACGTCACAGGGTCGCTA TGTTGGATGTGACAATTTTATTGGGGGTGTTTTTTTGGGTCGTTAATGTT GGGTGTGACCATTTTGAGGGATGAGTGTTTTTTCTTGCTAGTTTCCAAGC AGACGTTCTCTCTTTTTTAACAAATCAGCACACGACTATCACACATTCAA CTCAAATAAAAAGAAAAATTCAATACCAATTCATATCAATTTCATAAAAA GACTCCGTAATCGTTTAATTAACATAGAAAACCTGAAGTAAATGTAGCAC AAATACTTAACTCTAGTTTTATTGGGATTTCAACAGATATCAATGAGTGT AACGCCACACCAAAACCATGCCACGATCAGGCTGTTTGCACCAACATACC AGGATCGTTCACCTGCAACTGCACGGTGGGCTACACAGGAAATGGATTGG CAGGTGCTAATGGATGCACAGGTTAGTTGGAACTGCAAGAACGTTATAAT GTTATGTTTCCGACATGGCCATATCTATCTATCTATCTGCACAGGTATTT GAATTGAAAACACCTTTCTTACCATGTTATTCTTAACAAATTGATACTGG TAGAAATGGAGTGCACCGTTCCCATCGAACACCACCATATCGAACATATG GAACCCCCTGTTCTATTTCGAACACCTCCTCCAAAAGCTGCGTTAGTAGG ACAGAAATGGCACGTGTTAGGCAAGATACGTATGTCTGTGACAGGAACGC GTACAGTCTATTAAGTCCCATTAACAAAATGTTCGGGAGTGCCTGAGGCT GGTGGTACCGTTTGTACTTAAAACTAAAAAAATAAATTTCATCGCAACTA CCAACGACTCCTTGGACCTAATTCAAAAGCACATGGCAGTTGTAACTTTA CTAGCCTCTACCAGGCTCCAAACGTGGCTTGAAAGAGTCGAACTCGGCAC AAAAGACAGATAACATACCAGAGGAGTTGGCCAGCCGATACATGCAGTTT GCCACTCGTCTGGAGCCTGGTAGAGGCTATAGGTATAACGTTACGTCCAT TTACCCTTTTGTTTCTTAACTGGTTTCCGTTGTGACCTTTTTTGCTGGCA GAACTTCCCTGCGATCGCATTGATCTGACGGGATGGGACCTGCTCTTCCT TGTGGACAGCGCGGATCTGGGCGGTGGACAGCAGACCTTCGTCGATGACG TTAGGAGCTTCACCAGAGAGACCATCGACGAGCTATTAAACAGCGACGGC GTTACCCGCATAGGGCTTGTGCAGTACAACGACAACCAGCAGACGGCGTT CAATCTGAACCAGTACCAGACCAAGGCTGACATCCTCACCGCCGTGGATA ATATTAATTATCTAGGCGGAGGCACCTACACGGGAAGAGCAATCCACTAT GCTCGACAGGTGCGTTTCGACAATGTATCCACGTACTTAGGCCAATATAT ATGTAGCGCTTAAGAAAAGAGGGAATGTATTGTAAAAGTCAGATACGTTT AACGTATGTTGTGCCAATTGATACGCCATTTACAACCACAGGTCTCTTTT TCGCCTGCTAATGGAAACCGTGCCAACCGACCCGATGCGATGATAGTCAT CACAGACGGCGTGTCTCTTGACCCTATCACGTACGGCTCGACGGCTTCCA GACACCAGGGCATCACGGTCTTTGCCATCGGCATTGGAAACAGAATAGAC AGGGCCACGTTGGAGCAAATCGCCGAAAATGACCAAAAAGTTCTCCAGGT ATCGGATACACAAGAATCTCGCGATCAGGCCATTAGATCGTTGAAGGGAT GGCTGTGCAGAGGTACGTGTTAGTCAAATGCCCACTTCTTACGTTGCCCT TCTTTTGTTGAAATTCTGTTTGCGCAGTATAGTGTCATAGTCTGTATAGA CTGACTGACAGTAGAATACGTTAACGTTCGCAGGATTCTTGTATTGATTT AACCATCATTTGAGGCTTATATTGATTTGTGTTGACACTTCTCATCATAC ATACAAACTATATATATTTTCAGCTGACTTATTACTTAAAC

Coding sequence (CDS) from alignment at Sc0000002:3976424..3980214+

>transcript:BL97258_cuf4 ID=transcript:BL97258_cuf4|Name=transcript:BL97258_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=4620bp|location=Sequence derived from alignment at Sc0000002:3976424..3980214+ (Branchiostoma lanceolatum)
CTGAACGGGGCCTCCGCTGCGACCTGCAGGGCTGACCGAACCTGGAGTGA
GCTTGTCCCAACTTGTACAGACATCAATGAGTGCACACGGAACATGTGTC
ATAGCCTGGCTACATGCACCAATACTATTGGTTCATTTCGGTGTACATGC
ATCAGTGGATATACCGGAGATGGATTGACAGCTGGTACTGGATGCACAGA
TATCAATGAGTGTAACGCCACACCAAAACCATGCCACGATCAGGCTGTTT
GCACCAACATACCAGGATCGTTCACCTGCAACTGCACGGTGGGCTACACA
GGAAATGGATTGGCAGGTGCTAATGGATGCACAGAACTTCCCTGCGATCG
CATTGATCTGACGGGATGGGACCTGCTCTTCCTTGTGGACAGCGCGGATC
TGGGCGGTGGACAGCAGACCTTCGTCGATGACGTTAGGAGCTTCACCAGA
GAGACCATCGACGAGCTATTAAACAGCGACGGCGTTACCCGCATAGGGCT
TGTGCAGTACAACGACAACCAGCAGACGGCGTTCAATCTGAACCAGTACC
AGACCAAGGCTGACATCCTCACCGCCGTGGATAATATTAATTATCTAGGC
GGAGGCACCTACACGGGAAGAGCAATCCACTATGCTCGACAGGTCTCTTT
TTCGCCTGCTAATGGAAACCGTGCCAACCGACCCGATGCGATGATAGTCA
TCACAGACGGCGTGTCTCTTGACCCTATCACGTACGGCTCGACGGCTTCC
AGACACCAGGGCATCACGGTCTTTGCCATCGGCATTGGAAACAGAATAGA
CAGGGCCACGTTGGAGCAAATCGCCGAAAATGACCAAAAAGTTCTCCAGG
TATCGGATACACAAGAATCTCGCGATCAGGCCATTAGATCGTTGAAGGGA
TGGCTGTGCAGAGGTACGTGTTAGCTGAACGGGGCCTCCGCTGCGACCTG
CAGGGCTGACCGAACCTGGAGTGAGCTTGTCCCAACTTGTACAGACATCA
ATGAGTGCACACGGAACATGTGTCATAGCCTGGCTACATGCACCAATACT
ATTGGTTCATTTCGGTGTACATGCATCAGTGGATATACCGGAGATGGATT
GACAGCTGGTACTGGATGCACAGATATCAATGAGTGTAACGCCACACCAA
AACCATGCCACGATCAGGCTGTTTGCACCAACATACCAGGATCGTTCACC
TGCAACTGCACGGTGGGCTACACAGGAAATGGATTGGCAGGTGCTAATGG
ATGCACAGAACTTCCCTGCGATCGCATTGATCTGACGGGATGGGACCTGC
TCTTCCTTGTGGACAGCGCGGATCTGGGCGGTGGACAGCAGACCTTCGTC
GATGACGTTAGGAGCTTCACCAGAGAGACCATCGACGAGCTATTAAACAG
CGACGGCGTTACCCGCATAGGGCTTGTGCAGTACAACGACAACCAGCAGA
CGGCGTTCAATCTGAACCAGTACCAGACCAAGGCTGACATCCTCACCGCC
GTGGATAATATTAATTATCTAGGCGGAGGCACCTACACGGGAAGAGCAAT
CCACTATGCTCGACAGGTCTCTTTTTCGCCTGCTAATGGAAACCGTGCCA
ACCGACCCGATGCGATGATAGTCATCACAGACGGCGTGTCTCTTGACCCT
ATCACGTACGGCTCGACGGCTTCCAGACACCAGGGCATCACGGTCTTTGC
CATCGGCATTGGAAACAGAATAGACAGGGCCACGTTGGAGCAAATCGCCG
AAAATGACCAAAAAGTTCTCCAGGTATCGGATACACAAGAATCTCGCGAT
CAGGCCATTAGATCGTTGAAGGGATGGCTGTGCAGAGGTACGTGTTAGCT
GAACGGGGCCTCCGCTGCGACCTGCAGGGCTGACCGAACCTGGAGTGAGC
TTGTCCCAACTTGTACAGACATCAATGAGTGCACACGGAACATGTGTCAT
AGCCTGGCTACATGCACCAATACTATTGGTTCATTTCGGTGTACATGCAT
CAGTGGATATACCGGAGATGGATTGACAGCTGGTACTGGATGCACAGATA
TCAATGAGTGTAACGCCACACCAAAACCATGCCACGATCAGGCTGTTTGC
ACCAACATACCAGGATCGTTCACCTGCAACTGCACGGTGGGCTACACAGG
AAATGGATTGGCAGGTGCTAATGGATGCACAGAACTTCCCTGCGATCGCA
TTGATCTGACGGGATGGGACCTGCTCTTCCTTGTGGACAGCGCGGATCTG
GGCGGTGGACAGCAGACCTTCGTCGATGACGTTAGGAGCTTCACCAGAGA
GACCATCGACGAGCTATTAAACAGCGACGGCGTTACCCGCATAGGGCTTG
TGCAGTACAACGACAACCAGCAGACGGCGTTCAATCTGAACCAGTACCAG
ACCAAGGCTGACATCCTCACCGCCGTGGATAATATTAATTATCTAGGCGG
AGGCACCTACACGGGAAGAGCAATCCACTATGCTCGACAGGTCTCTTTTT
CGCCTGCTAATGGAAACCGTGCCAACCGACCCGATGCGATGATAGTCATC
ACAGACGGCGTGTCTCTTGACCCTATCACGTACGGCTCGACGGCTTCCAG
ACACCAGGGCATCACGGTCTTTGCCATCGGCATTGGAAACAGAATAGACA
GGGCCACGTTGGAGCAAATCGCCGAAAATGACCAAAAAGTTCTCCAGGTA
TCGGATACACAAGAATCTCGCGATCAGGCCATTAGATCGTTGAAGGGATG
GCTGTGCAGAGGTACGTGTTAGCTGAACGGGGCCTCCGCTGCGACCTGCA
GGGCTGACCGAACCTGGAGTGAGCTTGTCCCAACTTGTACAGACATCAAT
GAGTGCACACGGAACATGTGTCATAGCCTGGCTACATGCACCAATACTAT
TGGTTCATTTCGGTGTACATGCATCAGTGGATATACCGGAGATGGATTGA
CAGCTGGTACTGGATGCACAGATATCAATGAGTGTAACGCCACACCAAAA
CCATGCCACGATCAGGCTGTTTGCACCAACATACCAGGATCGTTCACCTG
CAACTGCACGGTGGGCTACACAGGAAATGGATTGGCAGGTGCTAATGGAT
GCACAGAACTTCCCTGCGATCGCATTGATCTGACGGGATGGGACCTGCTC
TTCCTTGTGGACAGCGCGGATCTGGGCGGTGGACAGCAGACCTTCGTCGA
TGACGTTAGGAGCTTCACCAGAGAGACCATCGACGAGCTATTAAACAGCG
ACGGCGTTACCCGCATAGGGCTTGTGCAGTACAACGACAACCAGCAGACG
GCGTTCAATCTGAACCAGTACCAGACCAAGGCTGACATCCTCACCGCCGT
GGATAATATTAATTATCTAGGCGGAGGCACCTACACGGGAAGAGCAATCC
ACTATGCTCGACAGGTCTCTTTTTCGCCTGCTAATGGAAACCGTGCCAAC
CGACCCGATGCGATGATAGTCATCACAGACGGCGTGTCTCTTGACCCTAT
CACGTACGGCTCGACGGCTTCCAGACACCAGGGCATCACGGTCTTTGCCA
TCGGCATTGGAAACAGAATAGACAGGGCCACGTTGGAGCAAATCGCCGAA
AATGACCAAAAAGTTCTCCAGGTATCGGATACACAAGAATCTCGCGATCA
GGCCATTAGATCGTTGAAGGGATGGCTGTGCAGAGGTACGTGTTAGCTGA
ACGGGGCCTCCGCTGCGACCTGCAGGGCTGACCGAACCTGGAGTGAGCTT
GTCCCAACTTGTACAGACATCAATGAGTGCACACGGAACATGTGTCATAG
CCTGGCTACATGCACCAATACTATTGGTTCATTTCGGTGTACATGCATCA
GTGGATATACCGGAGATGGATTGACAGCTGGTACTGGATGCACAGATATC
AATGAGTGTAACGCCACACCAAAACCATGCCACGATCAGGCTGTTTGCAC
CAACATACCAGGATCGTTCACCTGCAACTGCACGGTGGGCTACACAGGAA
ATGGATTGGCAGGTGCTAATGGATGCACAGAACTTCCCTGCGATCGCATT
GATCTGACGGGATGGGACCTGCTCTTCCTTGTGGACAGCGCGGATCTGGG
CGGTGGACAGCAGACCTTCGTCGATGACGTTAGGAGCTTCACCAGAGAGA
CCATCGACGAGCTATTAAACAGCGACGGCGTTACCCGCATAGGGCTTGTG
CAGTACAACGACAACCAGCAGACGGCGTTCAATCTGAACCAGTACCAGAC
CAAGGCTGACATCCTCACCGCCGTGGATAATATTAATTATCTAGGCGGAG
GCACCTACACGGGAAGAGCAATCCACTATGCTCGACAGGTCTCTTTTTCG
CCTGCTAATGGAAACCGTGCCAACCGACCCGATGCGATGATAGTCATCAC
AGACGGCGTGTCTCTTGACCCTATCACGTACGGCTCGACGGCTTCCAGAC
ACCAGGGCATCACGGTCTTTGCCATCGGCATTGGAAACAGAATAGACAGG
GCCACGTTGGAGCAAATCGCCGAAAATGACCAAAAAGTTCTCCAGGTATC
GGATACACAAGAATCTCGCGATCAGGCCATTAGATCGTTGAAGGGATGGC
TGTGCAGAGGTACGTGTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97258gene:BL97258Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97258_cuf4transcript:BL97258_cuf4-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97258_cuf4-E1BL97258_cuf4-E1-1564476830-35374Branchiostoma lanceolatumexon
BL97258_cuf4-E2BL97258_cuf4-E2-1564476830-35376Branchiostoma lanceolatumexon
BL97258_cuf4-E3BL97258_cuf4-E3-1564476830-35378Branchiostoma lanceolatumexon
BL97258_cuf4-E4BL97258_cuf4-E4-1564476830-35380Branchiostoma lanceolatumexon
BL97258_cuf4-E5BL97258_cuf4-E5-1564476830-35383Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000002genomeSc0000002:3976424..3980214 +
Properties
Property NameValue
Transcript idBL97258_cuf4
Biotypeprotein_coding