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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97256_cuf0 >transcript:BL97256_cuf0-protein ID=transcript:BL97256_cuf0-protein|Name=transcript:BL97256_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=234bp
ARQCQTLNAPANGALSPAGPYTFPATVSITCNTGYTRNGPSQTTCQADGS
WGPLPTCNIGQCPTLTPPTNGALSTTATSFQTVVTFTCNAGYVRNGAATR
TCQADRTWSNTDPTCTPRQCQALTAPANGALSPAGPQTFPATVTITCNTG
YTRNGPATTTCQADGSWGPIPTCDLGQCPTLTAPANGALSTTARTYQTVV
TFTCDSGYTRNGAADTTCQAGGAWSNTVPTCTRK Run BLAST on NCBI mRNA from alignment at Sc0000002:3962180..3967789+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97256_cuf0 ID=transcript:BL97256_cuf0|Name=transcript:BL97256_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=5610bp|location=Sequence derived from alignment at Sc0000002:3962180..3967789+ (Branchiostoma lanceolatum)
TAGCCCGACAATGTCAGACGTTGAATGCCCCAGCTAACGGGGCGTTGAGT
CCTGCCGGACCATACACCTTCCCGGCTACAGTCAGCATTACCTGTAACAC
GGGATACACACGGAACGGACCTTCACAGACGACGTGCCAAGCTGACGGAT
CATGGGGCCCTTTGCCAACATGCAATAGTAAGATAACTTTGAAAATAATC
AATAGAGCAATTCGCTTATCTACATATATTAATACATATATTGTTACTAT
GTACTATTATACAGATGTACATGTAAGATAGCAGAGGTCATAAGGAGTAA
GTCGCACCTTATTTTAATTACATGGAATTTGACGCGGAGACGTTGGCTAA
CGGATGTCGTTATGTACATGCAAAGAACAACGATCCATAGATGGTTCTTG
ATATGGACCATTTCACCATTTCAGTTGGACAATGTCCTACGTTGACTCCT
CCAACTAACGGGGCCCTGAGTACCACAGCGACCTCCTTCCAGACCGTGGT
TACCTTCACCTGTAACGCGGGATATGTTCGGAACGGCGCTGCTACTAGGA
CGTGCCAAGCTGACAGAACATGGAGTAACACTGATCCAACATGTACACGT
AAGATATGATAATATTATATCTAAGCTTTCTTTCAAGCTAAGATATCTTA
GAAATTCCATCAGGTTGTGGTACAGACACCTACACTTGTTAGTAGCGTGC
GTAGTCCAGTGGTTAGCGATCTTGCCTCTGGAACTAGAAGCCCGGGGTTC
GATCCCGGCTGTGACGCTCACCCAAAAGGGAGCCTTAGAAGGCATCTCTG
GAAAAGATCCCAAGAAAAATGTGTAATTATTTTATGCTCAATAGTAGCCC
CATGTATTATTACGATAAACATTTCCTTATTAAAGGCTGTTGACGATAAC
TTTTTTTAATCATTTTAGCCCGTCAATGTCAGGCACTGACGGCCCCAGCT
AACGGGGCGCTCAGTCCTGCCGGACCGCAGACCTTCCCGGCTACGGTCAC
CATCACCTGTAACACGGGATACACACGGAACGGACCCGCTACCACGACGT
GCCAAGCTGACGGATCATGGGGCCCTATACCAACATGCGATCGTAAGATA
ACCTTGAAAGATATCTATAGAGCCATTAGAATAGCAGTTTTCATCCATAT
ATGCATATTAGATAGCAGAGGTCATTAGGAGAAAGTCGCCGCTTACACAT
TTGATGGAAATTGAAATTTGCCGCAGAGTCGTTGGTTAACAGATGTCGTT
TTGTACATCTTAAGACAAAAGGTCCATAGAAGGTTCTTGAAAGTTCACCA
TTTCACCATTTCAGTTGGACAATGTCCTACGTTGACGGCCCCAGCAAACG
GAGCACTGAGTACCACAGCAACATCCTTCCAGACCGTGGTCACCTTCACC
TGTAACGCGGGATACGTACGGAACGGCGCTGCTGATACGACGTGCCAAGC
TGATGGAGCATGGAGCAACCCTGTTGTTCCAACGTGCACACGTAAGGCGA
CTTTCAAGTTGATGTATGTTAGCAATTTTCGTCAAATTGTACATGAACAC
CTTCACAGGATGGCGACGAGGATATTACAAAGAAAACGTGTTCATTGTCA
GGTTTCAAAGGTTGGTGAACTGACAGTAAAAGTGCATCTTCAGCACACAT
ATGAATCCTCTTAGCAAAAGATCGTGTTTTTTTAAACATTTCAGCCAGAC
CATGTCAGACGTTGACGGCCCCAACTAACGGAGCGCTGAGTCCTACTGGA
CAGCAGAACTACCCGGCTACGGTCACCTTCACCTGTAACGCGGGATACGT
ACGGAACGGCGCTGCTGATGCGACATGCCAAACCGACGGATCATGGAATA
ACGCTGTTCCAACGTGCACACGTAAGACGAATTTTAACCCTATCTATCAC
ACTATGTGCGTATATCACGTCCAGATGAGTTCCGTATTGTAGCGAAACGA
CTTCTGCCATGTAGCGAAACAACCTGTACCATGTAGCGAAACGACTTCTG
CGATGCATCGAAACGACTTCTGCCATGTAGCAAAACAACTTGTACCATGT
AGCGAAACGACTTCAGCCATGTAGCGAAACAATCTGTATTATGTAGCGAA
ACTTCTGCCATGTAGCGAAAGGACTTCTGCCATGTAGCGAAACAACTTGG
ACCATGTAGCGAAACGAATTCTGCAATGTAGCGAAACAACTTGGACCATG
TAGCGAAACAACTTCAGTAATGTAATGAAACGACTGTAGCGAACTGACAA
TGTAGCGAAAAAAACGGTTACCGGTATACCCTTTTAGCTCAGGTTTGCGA
GGAAGAAGCTATATTTCACTTTTTGACCTACCGCTATGCAGTCTGGTTAT
CGAATCGAAGAAATGACGTCTTCGGCCGCAAACTTTACCCAAACCAAAAA
CTGTCGGAACTAATACGATGGTGATATATGCTCAAGTATCTAATAGAAAG
GAAGCTACATTATATCCATTTACATTAGTTAAAAAGGAAGCCTTAGAAGG
CATCTTTGGAAAAAGATCCCAAGAAAAATGTGTTATTTTTCTATGCTCAA
AAGTTGACATACAGATGTTTGCTGACTTGTGTGGCCCCATATATCATTAC
GACAAACATTTCTTAATTAATGGTTCTTGAAAAAGACTTATGTTATCTTT
TCAGCCAGACAATGTCAGACGTTGGCGGCCCCAGCTAACGGAGCTCTGAG
TCCTGCCGGACCGCACACCTTCCCGGCTACGGTCACCATTACCTGTAACA
CGGGATACACACGGAACGGACCCGCTACCACGACGTGCCAAACTGACGGA
TCATGGGGCCCTTTGCCAACATGCAATCGTAAGATAACTTTGAAAGTTAT
CTATAGAGCAATTAGAAAAGCAATTTACATGCATAGATGCATATTAGATA
GCAGAGAAAGGAGAAGGAGAAAGTCGTTACAGATTTGATAAAAATTGAAA
TTTGTCGCAGAGTCGTTGGCTAATTGATGTCGTTTTGTACATTTTACGAG
AAAAGGTCCATAGAAGGTTTTTGACAGTTCAAAATGTCACCACTTCACCT
TCACAGTTGGACAATGTCCTACGTTGACGGCCCCAGCAAACGGAGCACTG
AGTACCACAGCAACATCCTTTCAGACTGTGGTCACCTTCACCTGTAACGC
GGGATACACACGGAACGGCGCTGCTGATACAACGTGCCAAGCTGGCGGAG
CATGGAGTAACCCTGTTGTTCCAACATGCACACGTAAGAGATGATATCTA
AGCTTTGTTTCAAGCTAAGATATCCTAGCAAATTCCATCAAATTGTGGTA
CAGACACCTACACTTGTTAGTAGCGTGCGTAGTCCAGTGGCTAGCGATCT
TGCCTCTGGAACTAGAAGCCCCGGGTTCAATCCCGGCTGTGTCGCTCACC
CGACATGCACGCTACCGGAAAGGGTCGCAGTCCTTAGAACGGGACATTAG
GCCGTGGTCCACTGTTCATTGTGCTTGTCAAAAAGAGCTAGGGGAATTTC
CCCGGTACAATGAACCTGTAAATACTGTAATAGTCTTTCTTCTCTGTCAC
GACCAGTGGAAGATAAGCCCATCTGTTCATTGAGTTCATTTGAGCTAAAC
TGGCTCGAGATCACTTTCCTTTCCTTTCCTTACACCAGATAGCGAGGAGG
ATATTATACCGAAAACGTATTTAGGTTTCAAAAGTTGGTAACCTGACGTA
GATGACCAAGCATCGCTCTGTGCATCTTAAGTACATATGTGAATCTTCTC
AGCAACATTTTTTTTACCATTTCAGCCAGACCATGTCAGACGTTGACGCC
CCCAACTAACGGGGTGCTGAGTCCGACTGGACAGCAGAACTACCCGGCGA
CGGTGACGTTCACCTGTAACACGGGATACGTACGGAACGGCGCTGCTGAT
GCAACGTGCCAAACCGACGGATCATGGAATAACGCTGTTCCAACGTGCAC
ACGTAAGTCAAATTGTAATCATATCTATCACACCTGTGCGTATATTTCGT
CCAGATGAGTTCCGTATTGTAGCGAACCGACTTCCGCCATGTAGCGAAAC
AACTTGTACCATGTAGCGAAACAACTTGTACCATGTAGCGAAACAACTTG
TACCATGTAGCGAAACAACTTGTACCATGTAGCGAAACAACTTCTGCCAT
GTAGCGAAACAACTTGTACCATGTAGCGAAACGACTTCTGCCATGTAGCG
AAACAACTTGTACCATGTAGCGAAACGACTTCTGCCATGTAGCGAAACAA
CTTGTACCATGTAGCGAAACGACTTCTGCCATGTAGCGAAACAACTTGTA
CCATGTAGCGAAACGACTTCTGCCATGTAGCGAAACAACTTGGACCTTGT
AGCGAAACAACTTCAGTAATGTAATGAAACGACTGTAGCGAAACAACTTC
TGCCATGTAGCGAAACAACTTGTACCATGTAGAGAAACTACTTAAGCCAT
GTAGCGAGACGACTTCTGCCATGTAGCGAAAAAACTTGCAGCATGTAGCG
AAACGACTTCTACCATGTAGCGAAACAACTATTGACATGTAGCGAAACAA
CTTCTGCCATGTAGCGAAACAACTTGGACCATGTAGCGAAACAACTTCGA
ATTCAGTAATGTAATGAAACGACTGTAGCGAACTGACGATGCAGCAAAAC
AACCGGTTACCGGTATACCCTTTTAGCTCAGGTTTGCGAGGAAGAAGCTA
TAATTTACTGTTTGACATACCGCTCTGGTTATCGAATCGAAGAAAAGACT
TCTTCAGCCGCAAATTTTACCCAAACCAAAAACTGTCAATACGGAACTAA
TACGATAGGGATATATGCTCAAGTATCTAATTAAAAGGAAGCTGCATTGT
ATCCATTTACATTAGTTAAAAAGGAAGCCTTAGAAGGCATCTTTGGAAAA
GATCCCAAGAAAAATGTGTTATTTTTCTATGCTCAAAATTTGACATACAG
ATGTTTGCTGACTTGTGTAGCCCCATGTATCATTACGATAAACATTTCTT
AATTATAGGTTCTTGAAAAAGACTTATGTTATCTTTTCAGCCAGACAATG
TCAGGCGTTGACGGCCCCAGCTAACGGAGCGCGGAGTCCTGCCGGACCGC
AAACCTTCCCGGCTACGGTCACCTTCACCTGTAACACGGGATACACACGG
AACGGACCTTCTCAGACGACGTGCCAAGCTGACGGATCATGGGGCCCTGT
TCCAACATGCGATCGTAAGATAACTTAGAAAGTTATCGATAGAGGAATTA
GAAAAGCAATATACATGCATAGATGCATATTAGAAAGCAGAGAAAGGAGA
AGGAGAAAGTCACATTTGATAAAAGTTGAAATTTGCCGCAGAGTCGTTGG
TTAACAGATGTCATTTTGTACATCTTAAGACAAAATGTCCATAGAAGGTT
CTTGAAAGTTCACCATTTCACCATTTCAGTTGGACAATGTCCTACGTTGA
CGGCGCCAGCTAACGGAGCGCTGAGTACAACAGCTAGAACCTACCAGACG
GTGGTCACGTTCACCTGTGACTCGGGATACACACGGAACGGCGCTGCTGA
TACGACGTGCCAAGCTGGCGGAGCATGGAGTAACACTGTTCCAACATGCA
CACGTAAGAT Coding sequence (CDS) from alignment at Sc0000002:3962180..3967789+ >transcript:BL97256_cuf0 ID=transcript:BL97256_cuf0|Name=transcript:BL97256_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2808bp|location=Sequence derived from alignment at Sc0000002:3962180..3967789+ (Branchiostoma lanceolatum)
GCCCGACAATGTCAGACGTTGAATGCCCCAGCTAACGGGGCGTTGAGTCC
TGCCGGACCATACACCTTCCCGGCTACAGTCAGCATTACCTGTAACACGG
GATACACACGGAACGGACCTTCACAGACGACGTGCCAAGCTGACGGATCA
TGGGGCCCTTTGCCAACATGCAATATTGGACAATGTCCTACGTTGACTCC
TCCAACTAACGGGGCCCTGAGTACCACAGCGACCTCCTTCCAGACCGTGG
TTACCTTCACCTGTAACGCGGGATATGTTCGGAACGGCGCTGCTACTAGG
ACGTGCCAAGCTGACAGAACATGGAGTAACACTGATCCAACATGTACACC
CCGTCAATGTCAGGCACTGACGGCCCCAGCTAACGGGGCGCTCAGTCCTG
CCGGACCGCAGACCTTCCCGGCTACGGTCACCATCACCTGTAACACGGGA
TACACACGGAACGGACCCGCTACCACGACGTGCCAAGCTGACGGATCATG
GGGCCCTATACCAACATGCGATCTTGGACAATGTCCTACGTTGACGGCGC
CAGCTAACGGAGCGCTGAGTACAACAGCTAGAACCTACCAGACGGTGGTC
ACGTTCACCTGTGACTCGGGATACACACGGAACGGCGCTGCTGATACGAC
GTGCCAAGCTGGCGGAGCATGGAGTAACACTGTTCCAACATGCACACGTA
AGGCCCGACAATGTCAGACGTTGAATGCCCCAGCTAACGGGGCGTTGAGT
CCTGCCGGACCATACACCTTCCCGGCTACAGTCAGCATTACCTGTAACAC
GGGATACACACGGAACGGACCTTCACAGACGACGTGCCAAGCTGACGGAT
CATGGGGCCCTTTGCCAACATGCAATATTGGACAATGTCCTACGTTGACT
CCTCCAACTAACGGGGCCCTGAGTACCACAGCGACCTCCTTCCAGACCGT
GGTTACCTTCACCTGTAACGCGGGATATGTTCGGAACGGCGCTGCTACTA
GGACGTGCCAAGCTGACAGAACATGGAGTAACACTGATCCAACATGTACA
CCCCGTCAATGTCAGGCACTGACGGCCCCAGCTAACGGGGCGCTCAGTCC
TGCCGGACCGCAGACCTTCCCGGCTACGGTCACCATCACCTGTAACACGG
GATACACACGGAACGGACCCGCTACCACGACGTGCCAAGCTGACGGATCA
TGGGGCCCTATACCAACATGCGATCTTGGACAATGTCCTACGTTGACGGC
GCCAGCTAACGGAGCGCTGAGTACAACAGCTAGAACCTACCAGACGGTGG
TCACGTTCACCTGTGACTCGGGATACACACGGAACGGCGCTGCTGATACG
ACGTGCCAAGCTGGCGGAGCATGGAGTAACACTGTTCCAACATGCACACG
TAAGGCCCGACAATGTCAGACGTTGAATGCCCCAGCTAACGGGGCGTTGA
GTCCTGCCGGACCATACACCTTCCCGGCTACAGTCAGCATTACCTGTAAC
ACGGGATACACACGGAACGGACCTTCACAGACGACGTGCCAAGCTGACGG
ATCATGGGGCCCTTTGCCAACATGCAATATTGGACAATGTCCTACGTTGA
CTCCTCCAACTAACGGGGCCCTGAGTACCACAGCGACCTCCTTCCAGACC
GTGGTTACCTTCACCTGTAACGCGGGATATGTTCGGAACGGCGCTGCTAC
TAGGACGTGCCAAGCTGACAGAACATGGAGTAACACTGATCCAACATGTA
CACCCCGTCAATGTCAGGCACTGACGGCCCCAGCTAACGGGGCGCTCAGT
CCTGCCGGACCGCAGACCTTCCCGGCTACGGTCACCATCACCTGTAACAC
GGGATACACACGGAACGGACCCGCTACCACGACGTGCCAAGCTGACGGAT
CATGGGGCCCTATACCAACATGCGATCTTGGACAATGTCCTACGTTGACG
GCGCCAGCTAACGGAGCGCTGAGTACAACAGCTAGAACCTACCAGACGGT
GGTCACGTTCACCTGTGACTCGGGATACACACGGAACGGCGCTGCTGATA
CGACGTGCCAAGCTGGCGGAGCATGGAGTAACACTGTTCCAACATGCACA
CGTAAGGCCCGACAATGTCAGACGTTGAATGCCCCAGCTAACGGGGCGTT
GAGTCCTGCCGGACCATACACCTTCCCGGCTACAGTCAGCATTACCTGTA
ACACGGGATACACACGGAACGGACCTTCACAGACGACGTGCCAAGCTGAC
GGATCATGGGGCCCTTTGCCAACATGCAATATTGGACAATGTCCTACGTT
GACTCCTCCAACTAACGGGGCCCTGAGTACCACAGCGACCTCCTTCCAGA
CCGTGGTTACCTTCACCTGTAACGCGGGATATGTTCGGAACGGCGCTGCT
ACTAGGACGTGCCAAGCTGACAGAACATGGAGTAACACTGATCCAACATG
TACACCCCGTCAATGTCAGGCACTGACGGCCCCAGCTAACGGGGCGCTCA
GTCCTGCCGGACCGCAGACCTTCCCGGCTACGGTCACCATCACCTGTAAC
ACGGGATACACACGGAACGGACCCGCTACCACGACGTGCCAAGCTGACGG
ATCATGGGGCCCTATACCAACATGCGATCTTGGACAATGTCCTACGTTGA
CGGCGCCAGCTAACGGAGCGCTGAGTACAACAGCTAGAACCTACCAGACG
GTGGTCACGTTCACCTGTGACTCGGGATACACACGGAACGGCGCTGCTGA
TACGACGTGCCAAGCTGGCGGAGCATGGAGTAACACTGTTCCAACATGCA
CACGTAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000002 | genome | Sc0000002:3962180..3967789 + |
Properties
| Property Name | Value |
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| Transcript id | BL97256_cuf0 |
| Biotype | protein_coding |
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