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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97248_cuf7 >transcript:BL97248_cuf7-protein ID=transcript:BL97248_cuf7-protein|Name=transcript:BL97248_cuf7|organism=Branchiostoma lanceolatum|type=polypeptide|length=260bp
SGQYCQIETNECASNPCLHGQCIDVVNGYNCDCDLGWIGTNCNQDIDECA
SSPCQNGGVCTDQDNGYVCSCSAGFTGTNCDVMEITIAPQTPYRCDFDTN
NCGFVQATDDDADFVRLTGKCGNYGAPADHTTGQNGFYMCLESTTAPNTM
AAMYSPAFVTTSPRKLRFWFYKNTIGDSFMELTVKSTGQPNNVWTADDRS
ADWRMAELDLPAGRFELTFRGVKNGYRSTDFGFDDIQILDPNTNECASSP
CQNGGTCTDG Run BLAST on NCBI mRNA from alignment at Sc0000002:8265032..8270003+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97248_cuf7 ID=transcript:BL97248_cuf7|Name=transcript:BL97248_cuf7|organism=Branchiostoma lanceolatum|type=mRNA|length=4972bp|location=Sequence derived from alignment at Sc0000002:8265032..8270003+ (Branchiostoma lanceolatum)
GGTCTGGACAATACTGCCAAATAGGTGATCTATATTCATGTGTTACTCTT
GTTTCATGGGGTAGTCATTAGCAGTTACAAATAATTGGAAATATTGAGAC
CACACCAGACAAAGTTGTTAATTGACATTATTAATACTCGTATACATTTA
TGTATAGGCTAATTCATTTGTGTCTACTTCACTGTTTGTATGTATAGATT
AAGTAGACCTTACGGAAGTCGCTGCACTTTTGGTGTGTCAATATAGATTT
CTGTATCAAAAATATGTATATGTATAGCAGACACGGACAGATAAGATACC
ATTGATCACTTGTTTGGAGAACTGAAAACATTCATTAAGGGTCGCACGTG
TTAAAGCGTGTCAATTTTGCATCTGGATTCTGGAGTGATGTTTATTTTCA
TTTTATTTATTGTGCAGTTGATATTTTCTTTTATTTATATCTGTCTATTT
TTGTCGTTTTATACAGAAACGAACGAGTGCGCAAGCAATCCGTGTCTACA
CGGCCAGTGCATTGATGTAGTCAATGGCTACAATTGTGACTGCGACCTAG
GATGGATCGGCACAAACTGTAACCAAGGTAACGCTGCAGTTCCAAGAAGT
CATCATTGTCAAAATCGNAACCAAGGTAACACTGTAGTTCCAAGAAGTCA
TAATTGTCAAAATCTAACACACATGAAGCTACGTTCTAATACAATGTTCC
TATGTGTGAACATATGACGTCTTTGCTTTGCTTTGCTTTGCTTATGCGTG
TAGTTAAAACAGAAGTGCCTATACAAGGCTGTAACTTTGAAAACTGGTAG
GGTTCGTCCTACTATGTTTCAAATAATGATTTTAAAATAGTAATTTTAAA
ACGTTTCTCATACTACATCTTAAAGATGTGTATGCGCATCGCACTGTATT
ATAAACAACACGCGGAATAGTTGGCGTGATAGTGGAAAGATAGCCACACA
ACAAGTCACAGGGTTTTAAGGGTGTTACTTGACTAATCTCCAGGCAAATC
TACCGGTGGCAAAGACAGTATCCAAAGGGCAGAAGCAGTTTCATTGACCA
CCGAGGTCTGCAAGCCTGTGGCCAATAAAACTGCTTTTACAACCGATAGA
TCTGCTTGGAGATTATCATTGGACCAAATAACAAAGCAGTACATGCTCCT
TTCTACAGACATTGACGAGTGCGCCAGCTCGCCGTGTCAAAATGGCGGCG
TCTGCACAGACCAGGACAACGGTTATGTTTGCAGCTGTAGCGCAGGGTTT
ACCGGGACAAACTGTGACGTCATGGAAAGTAAGAAATGTTGAAAACTATT
TGAAATCTAAACTTTATTGGTACATCAATCGCTCAGATTTCACTTTATGA
AACCGTCTAACGTTACAACGAAAGAGGAAAGCATGCTACAGGGAGAACAT
GCTCAATTGTGATAGGAGCAAGAAGCTGGGTGTAGCTGGGCACGTCAGTG
AGGCAAGAATTTACCGTGAAGTTAATAGCAAGTTCTTTTAATCTTAAATC
TTCTTCCTGCTTCCTAAACCCGGCCCGTAACCAATACACATTTGGTGCCC
AATAGCTACCTCAGCATGGAAAAGGTTAATCCCCCCTCTCACTGGACCCG
CGGCACGCTGGCGGCGTCGCTGCTTCCGATCGAATTGACAAAAGCACTCA
ACGAATTTCATCGACAAAAAACGAATCTTTTTAAGCTTTGTGTGTTTTGT
TGTCTTTTTGTCATACTTGTACGTTTTGATTGATTTTCCCATTATAAAGT
CAAGGGTAACACAGATCCAGTTTAGGACGCAGCGACGCCGCCAGCGTGCC
GCGGGTCCAGTGAGAGGGGGGCTTTAGCTCCTACATTACGAACTCTAGCC
CTGAATTTGAAACGATCACATATAATTCTCACCTGCATATCCTAGTCACC
ATTGCTCCACAAACCCCGTATCGTTGCGACTTCGATACGAACAACTGCGG
CTTCGTACAAGCGACGGACGACGACGCGGACTTCGTACGACTGACGGGGA
AGTGTGGCAACTACGGTGCCCCTGCGGATCACACCACAGGTAAAACACTA
CGTTGTCGTTTATGTCAGTTACATTAGACGTATTCCCTGAACATCTGAAG
TTGTACTGTTTCATTTTTAAGAAAGAATAACGGGTACCAAGATTTTAATC
CCATCCAATCAATTATGGAGCCCCAGCTGATCACACTCACAACGTTGTCA
TTCGTCATTTACATAAGACGTATTCCCGGGAACATCTCCAGTGGTTCTGC
TTCATTGTTTAAGAAATAATCACGGGCGCCAAGAGTTTAGCCCCTTCTAA
TTATGGAGCCGCTGCTGATCACACTTCGGGTACCATGTCTGGCAACCACT
CGTATTATCTTTATTCGTATTCAGATACATAGTACAGATACATAGTACAG
ATACATAGTACAGATACAAATACAGATCGAGTATGGTGACCGTGTCAATG
CATTGACACGGTAGCCTTCGCGTGAATTTATTTAAGGTGGATGACAGGTT
GCGAATCTGAGACCCACACACTTTGGGCATCCGCCATCTCCAGCGGCACC
AATTCGAGGGAGACGTGCTGGTTCTGGTTGGGATGCTTGCAGCGAGCTGC
CGGATGACTCTTACACTCGAGGTCCGCCTTGATAACGCCAGCCCGCCTGG
CGCTGCTCTCGTCCGCCAGTTGAAGATAGCTGCCGTTGGAGACTTGTCCC
TCTAACTGAGGGGGGAATGCGTGTAAAGTGCCTTTCCCAAGGGCACAACG
TCTGGGCGCAAGTTCGGACATGTCTCTGGGCACCCTGGGATTCGATCCCG
GGTCCCATTGTTTGACAGCCGTGCGCTCTGCACTTGCGCCACACGACGCC
ACATACCATACATATATGTTGTCAGTTGTTTTGTTCTATATCGTACTGTA
CAAGATCATTGAGGCCCTATTGTAGGGCATCAGGACCAGGTGGCTGCAGG
TGCTTGGCTAAGTGCGGCCGATGGAGCTAGTGGTGCTGAAATTTAAAACA
AAAAGGCCTAAACAAGGCAAATAAAATTTGTGCATTGAACATCACCAGCG
TTTCTGTTTCATTGTTTACGAAATGATCACGGGCGCCAAGGTTTTAACCC
AATCCCACTTCCGACACCATGTTATGTCTCTTTGTCATCTTCCTGCCTCA
GTCTAAATCTCTGCAAGCAGACCAAGAGATATAACAGATTTTTCAGTTTC
AGTGTCAGTGTGGTAAAAGTACTGGGATGATGTCAAGTGGGAGTACCCTG
ATGCATCTGTAATGTCTTAGATGTTCAATAGTTTTTGCATGGCATTCAAA
TCTACACAATTCCAGTGTTTTCATGAAAAAAAAGTGCATTCCAATGTTAG
ACGTGTTCGAACAATTACTTTTCTTGGCTGGTAAAAATCCAAATTTTCAA
TCAATGCGATAAGACATACACCGCATGATTTCATAATTCACATATCCACT
TGTGACTTACTATGCGGATAAACAAATTTTGTTACAGGACAGAACGGTTT
CTACATGTGCTTGGAAAGCACCACAGCACCTAACACCATGGCTGCCATGT
ACAGCCCAGCTTTTGTTACAACTTCTCCGAGAAAACTGAGATTCTGGTTC
TACAAAAACACCATCGGAGACTCCTTTATGGAACTTACCGTCAAGAGTAC
AGGCCAGCCGAACAATGTCTGGACAGCAGACGACAGATCAGCCGACTGGA
GGATGGCTGAGCTGGACTTACCGGCAGGACGGTTTGAGGTAAGCTGTCAA
ACTTGACTGGCTACATTTTGTAGTTAGAATTTGAAATAGAATAGTCACAT
GTGATACTGTGCTTAACAGTTTTTGTCCTGTTACCTTTAATTAACCTTTC
ATCTGGGAGGGAAGTTTGGACTCACGTTTAAACTAAGCATCTGTTATGCA
TTTAACGTTACATGTATTCATTCACTTATTTCAGCGTCTTGTCAAGTATG
TTATTTTCCATAATGTACAAGTGACGGCGAGAATATACGTTGAGTGCAAC
TTGAGTCCGCCGTCACTTTGTCTTTGTCCATTTCTTTGTATTCTTTAATG
TTTTTTGAATAACAAAAAATATAATCTTCGAGCAAGAACTTGCAGTAAAC
ATAGCAGTCGCCTGAAATGATTTTTGCAAGCCTTTCTTGTGACCTTTGAT
CTCGTTTTTGGGTCTGCATTGTCACATTTGCAGTTGTTCTTTGTGGCCCG
GCAGTTTGTTTGAATGGTAGTGATTTAATTTCAGTAATCTGAATACTTTT
CTGAAATAATATAGACCCCGACATAAGCTATGCCATATGATGATGTCTGA
ATGTAGAATGGATCCAGGGTTAAATGTATGTTCCTCCTAAGTTGCCGATT
CTCCTTACCTTACAGCTAACCTTTAGAGGAGTGAAGAACGGATACAGAAG
TACGGATTTCGGCTTCGATGACATACAGATCCTCGATCCAAGTGAGTTAA
GTTTCAAAAATGATGATTGAGTTCATTATTTTAGAACGGTGCATTGACTC
CTAATAGATTAACACATGCACTGCATCTGATATGGCATTATAAGGTGTTT
GCCAAAATTGACGAGTCTACCGGCAGAGATCGTGGTTAAAGCTTCCGTTG
ACAGACTCCTATCGGGGTCTCTACGGTTAGAATCACCGATTCTGCAAGAT
CTCTACTCTAAAAGATATAGGTAAAATATCTATTATTATACTTATCACCT
TGTACAACTGTTATGCAGTAAGCTTATAAGATCATTTGATATTGGGGATT
CGTTTTACACAACCAGTAAATCTCACTTGCTGACATTTTAGTGTCTGTCA
GACACCTTCCTCAGAGCTTCTAAATAGTCGAAGTAGATGGCACTTTTGCG
GTGAGAACACAATCCCAAACGTGGCTAAGTTTGTAATATGGAATATGTGT
TGTATACCTTTCCCAGATACAAACGAATGCGCCAGTTCGCCCTGTCAAAA
CGGAGGAACCTGTACGGACGGC Coding sequence (CDS) from alignment at Sc0000002:8265032..8270003+ >transcript:BL97248_cuf7 ID=transcript:BL97248_cuf7|Name=transcript:BL97248_cuf7|organism=Branchiostoma lanceolatum|type=CDS|length=5460bp|location=Sequence derived from alignment at Sc0000002:8265032..8270003+ (Branchiostoma lanceolatum)
TCTGGACAATACTGCCAAATAGAAACGAACGAGTGCGCAAGCAATCCGTG
TCTACACGGCCAGTGCATTGATGTAGTCAATGGCTACAATTGTGACTGCG
ACCTAGGATGGATCGGCACAAACTGTAACCAAGACATTGACGAGTGCGCC
AGCTCGCCGTGTCAAAATGGCGGCGTCTGCACAGACCAGGACAACGGTTA
TGTTTGCAGCTGTAGCGCAGGGTTTACCGGGACAAACTGTGACGTCATGG
AAATCACCATTGCTCCACAAACCCCGTATCGTTGCGACTTCGATACGAAC
AACTGCGGCTTCGTACAAGCGACGGACGACGACGCGGACTTCGTACGACT
GACGGGGAAGTGTGGCAACTACGGTGCCCCTGCGGATCACACCACAGGAC
AGAACGGTTTCTACATGTGCTTGGAAAGCACCACAGCACCTAACACCATG
GCTGCCATGTACAGCCCAGCTTTTGTTACAACTTCTCCGAGAAAACTGAG
ATTCTGGTTCTACAAAAACACCATCGGAGACTCCTTTATGGAACTTACCG
TCAAGAGTACAGGCCAGCCGAACAATGTCTGGACAGCAGACGACAGATCA
GCCGACTGGAGGATGGCTGAGCTGGACTTACCGGCAGGACGGTTTGAGCT
AACCTTTAGAGGAGTGAAGAACGGATACAGAAGTACGGATTTCGGCTTCG
ATGACATACAGATCCTCGATCCAAATACAAACGAATGCGCCAGTTCGCCC
TGTCAAAACGGAGGAACCTGTACGGACGGCTCTGGACAATACTGCCAAAT
AGAAACGAACGAGTGCGCAAGCAATCCGTGTCTACACGGCCAGTGCATTG
ATGTAGTCAATGGCTACAATTGTGACTGCGACCTAGGATGGATCGGCACA
AACTGTAACCAAGACATTGACGAGTGCGCCAGCTCGCCGTGTCAAAATGG
CGGCGTCTGCACAGACCAGGACAACGGTTATGTTTGCAGCTGTAGCGCAG
GGTTTACCGGGACAAACTGTGACGTCATGGAAATCACCATTGCTCCACAA
ACCCCGTATCGTTGCGACTTCGATACGAACAACTGCGGCTTCGTACAAGC
GACGGACGACGACGCGGACTTCGTACGACTGACGGGGAAGTGTGGCAACT
ACGGTGCCCCTGCGGATCACACCACAGGACAGAACGGTTTCTACATGTGC
TTGGAAAGCACCACAGCACCTAACACCATGGCTGCCATGTACAGCCCAGC
TTTTGTTACAACTTCTCCGAGAAAACTGAGATTCTGGTTCTACAAAAACA
CCATCGGAGACTCCTTTATGGAACTTACCGTCAAGAGTACAGGCCAGCCG
AACAATGTCTGGACAGCAGACGACAGATCAGCCGACTGGAGGATGGCTGA
GCTGGACTTACCGGCAGGACGGTTTGAGCTAACCTTTAGAGGAGTGAAGA
ACGGATACAGAAGTACGGATTTCGGCTTCGATGACATACAGATCCTCGAT
CCAAATACAAACGAATGCGCCAGTTCGCCCTGTCAAAACGGAGGAACCTG
TACGGACGGCTCTGGACAATACTGCCAAATAGAAACGAACGAGTGCGCAA
GCAATCCGTGTCTACACGGCCAGTGCATTGATGTAGTCAATGGCTACAAT
TGTGACTGCGACCTAGGATGGATCGGCACAAACTGTAACCAAGACATTGA
CGAGTGCGCCAGCTCGCCGTGTCAAAATGGCGGCGTCTGCACAGACCAGG
ACAACGGTTATGTTTGCAGCTGTAGCGCAGGGTTTACCGGGACAAACTGT
GACGTCATGGAAATCACCATTGCTCCACAAACCCCGTATCGTTGCGACTT
CGATACGAACAACTGCGGCTTCGTACAAGCGACGGACGACGACGCGGACT
TCGTACGACTGACGGGGAAGTGTGGCAACTACGGTGCCCCTGCGGATCAC
ACCACAGGACAGAACGGTTTCTACATGTGCTTGGAAAGCACCACAGCACC
TAACACCATGGCTGCCATGTACAGCCCAGCTTTTGTTACAACTTCTCCGA
GAAAACTGAGATTCTGGTTCTACAAAAACACCATCGGAGACTCCTTTATG
GAACTTACCGTCAAGAGTACAGGCCAGCCGAACAATGTCTGGACAGCAGA
CGACAGATCAGCCGACTGGAGGATGGCTGAGCTGGACTTACCGGCAGGAC
GGTTTGAGCTAACCTTTAGAGGAGTGAAGAACGGATACAGAAGTACGGAT
TTCGGCTTCGATGACATACAGATCCTCGATCCAAATACAAACGAATGCGC
CAGTTCGCCCTGTCAAAACGGAGGAACCTGTACGGACGGCTCTGGACAAT
ACTGCCAAATAGAAACGAACGAGTGCGCAAGCAATCCGTGTCTACACGGC
CAGTGCATTGATGTAGTCAATGGCTACAATTGTGACTGCGACCTAGGATG
GATCGGCACAAACTGTAACCAAGACATTGACGAGTGCGCCAGCTCGCCGT
GTCAAAATGGCGGCGTCTGCACAGACCAGGACAACGGTTATGTTTGCAGC
TGTAGCGCAGGGTTTACCGGGACAAACTGTGACGTCATGGAAATCACCAT
TGCTCCACAAACCCCGTATCGTTGCGACTTCGATACGAACAACTGCGGCT
TCGTACAAGCGACGGACGACGACGCGGACTTCGTACGACTGACGGGGAAG
TGTGGCAACTACGGTGCCCCTGCGGATCACACCACAGGACAGAACGGTTT
CTACATGTGCTTGGAAAGCACCACAGCACCTAACACCATGGCTGCCATGT
ACAGCCCAGCTTTTGTTACAACTTCTCCGAGAAAACTGAGATTCTGGTTC
TACAAAAACACCATCGGAGACTCCTTTATGGAACTTACCGTCAAGAGTAC
AGGCCAGCCGAACAATGTCTGGACAGCAGACGACAGATCAGCCGACTGGA
GGATGGCTGAGCTGGACTTACCGGCAGGACGGTTTGAGCTAACCTTTAGA
GGAGTGAAGAACGGATACAGAAGTACGGATTTCGGCTTCGATGACATACA
GATCCTCGATCCAAATACAAACGAATGCGCCAGTTCGCCCTGTCAAAACG
GAGGAACCTGTACGGACGGCTCTGGACAATACTGCCAAATAGAAACGAAC
GAGTGCGCAAGCAATCCGTGTCTACACGGCCAGTGCATTGATGTAGTCAA
TGGCTACAATTGTGACTGCGACCTAGGATGGATCGGCACAAACTGTAACC
AAGACATTGACGAGTGCGCCAGCTCGCCGTGTCAAAATGGCGGCGTCTGC
ACAGACCAGGACAACGGTTATGTTTGCAGCTGTAGCGCAGGGTTTACCGG
GACAAACTGTGACGTCATGGAAATCACCATTGCTCCACAAACCCCGTATC
GTTGCGACTTCGATACGAACAACTGCGGCTTCGTACAAGCGACGGACGAC
GACGCGGACTTCGTACGACTGACGGGGAAGTGTGGCAACTACGGTGCCCC
TGCGGATCACACCACAGGACAGAACGGTTTCTACATGTGCTTGGAAAGCA
CCACAGCACCTAACACCATGGCTGCCATGTACAGCCCAGCTTTTGTTACA
ACTTCTCCGAGAAAACTGAGATTCTGGTTCTACAAAAACACCATCGGAGA
CTCCTTTATGGAACTTACCGTCAAGAGTACAGGCCAGCCGAACAATGTCT
GGACAGCAGACGACAGATCAGCCGACTGGAGGATGGCTGAGCTGGACTTA
CCGGCAGGACGGTTTGAGCTAACCTTTAGAGGAGTGAAGAACGGATACAG
AAGTACGGATTTCGGCTTCGATGACATACAGATCCTCGATCCAAATACAA
ACGAATGCGCCAGTTCGCCCTGTCAAAACGGAGGAACCTGTACGGACGGC
TCTGGACAATACTGCCAAATAGAAACGAACGAGTGCGCAAGCAATCCGTG
TCTACACGGCCAGTGCATTGATGTAGTCAATGGCTACAATTGTGACTGCG
ACCTAGGATGGATCGGCACAAACTGTAACCAAGACATTGACGAGTGCGCC
AGCTCGCCGTGTCAAAATGGCGGCGTCTGCACAGACCAGGACAACGGTTA
TGTTTGCAGCTGTAGCGCAGGGTTTACCGGGACAAACTGTGACGTCATGG
AAATCACCATTGCTCCACAAACCCCGTATCGTTGCGACTTCGATACGAAC
AACTGCGGCTTCGTACAAGCGACGGACGACGACGCGGACTTCGTACGACT
GACGGGGAAGTGTGGCAACTACGGTGCCCCTGCGGATCACACCACAGGAC
AGAACGGTTTCTACATGTGCTTGGAAAGCACCACAGCACCTAACACCATG
GCTGCCATGTACAGCCCAGCTTTTGTTACAACTTCTCCGAGAAAACTGAG
ATTCTGGTTCTACAAAAACACCATCGGAGACTCCTTTATGGAACTTACCG
TCAAGAGTACAGGCCAGCCGAACAATGTCTGGACAGCAGACGACAGATCA
GCCGACTGGAGGATGGCTGAGCTGGACTTACCGGCAGGACGGTTTGAGCT
AACCTTTAGAGGAGTGAAGAACGGATACAGAAGTACGGATTTCGGCTTCG
ATGACATACAGATCCTCGATCCAAATACAAACGAATGCGCCAGTTCGCCC
TGTCAAAACGGAGGAACCTGTACGGACGGCTCTGGACAATACTGCCAAAT
AGAAACGAACGAGTGCGCAAGCAATCCGTGTCTACACGGCCAGTGCATTG
ATGTAGTCAATGGCTACAATTGTGACTGCGACCTAGGATGGATCGGCACA
AACTGTAACCAAGACATTGACGAGTGCGCCAGCTCGCCGTGTCAAAATGG
CGGCGTCTGCACAGACCAGGACAACGGTTATGTTTGCAGCTGTAGCGCAG
GGTTTACCGGGACAAACTGTGACGTCATGGAAATCACCATTGCTCCACAA
ACCCCGTATCGTTGCGACTTCGATACGAACAACTGCGGCTTCGTACAAGC
GACGGACGACGACGCGGACTTCGTACGACTGACGGGGAAGTGTGGCAACT
ACGGTGCCCCTGCGGATCACACCACAGGACAGAACGGTTTCTACATGTGC
TTGGAAAGCACCACAGCACCTAACACCATGGCTGCCATGTACAGCCCAGC
TTTTGTTACAACTTCTCCGAGAAAACTGAGATTCTGGTTCTACAAAAACA
CCATCGGAGACTCCTTTATGGAACTTACCGTCAAGAGTACAGGCCAGCCG
AACAATGTCTGGACAGCAGACGACAGATCAGCCGACTGGAGGATGGCTGA
GCTGGACTTACCGGCAGGACGGTTTGAGCTAACCTTTAGAGGAGTGAAGA
ACGGATACAGAAGTACGGATTTCGGCTTCGATGACATACAGATCCTCGAT
CCAAATACAAACGAATGCGCCAGTTCGCCCTGTCAAAACGGAGGAACCTG
TACGGACGGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000002 | genome | Sc0000002:8265032..8270003 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97248_cuf7 |
| Biotype | protein_coding |
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