|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97246_cuf5 >transcript:BL97246_cuf5-protein ID=transcript:BL97246_cuf5-protein|Name=transcript:BL97246_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=175bp
HFLCMGTAGAPQNAVARLISPVFVPQVHINRVLRFWYFKNVIGNSGFRVY
LMLNGNLDPNPVWEETGRASEWRMAEINIDGRSQFQIVLEGFRSGGNLLD
LAIDDVTILDPDQDECNSNPCMNNGVCSDALFSYTCACRPQWVGSHCSYG
IGSCDFEEPLSNYIYLQDDTDDFDW Run BLAST on NCBI mRNA from alignment at Sc0000002:8261275..8262607+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97246_cuf5 ID=transcript:BL97246_cuf5|Name=transcript:BL97246_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=1333bp|location=Sequence derived from alignment at Sc0000002:8261275..8262607+ (Branchiostoma lanceolatum)
GCCATTTCCTGTGCATGGGCACCGCGGGGGCGCCTCAGAACGCCGTTGCG
AGGCTGATCAGTCCGGTGTTCGTCCCGCAAGTTCACATCAACAGGGTCCT
AAGGTTCTGGTACTTCAAGAACGTCATCGGAAACTCCGGATTCCGGGTTT
ACCTGATGCTGAACGGGAATCTCGACCCGAACCCGGTCTGGGAGGAAACG
GGCAGAGCTAGCGAATGGCGGATGGCTGAAATCAACATCGACGGAAGGAG
TCAATTCCAGGTTAGTTGTACAAAATTTGACCGACATGTGTCATTCTATA
GATTACATGCTTGCTACGATGATCATGTGGCTTAACTGGTGTGCTATCGT
TCGAAGAAATTTGACACACACTTACTTAGAAATGTACTCAAAGATTTCAA
GAGTTCGAAGTTTGTGCAACAACCTGAAGACAAAGTGTTGTGAATTTTTG
TGCAAAAGTATGCACAGATAAAATAATGTTTTAAGAATTCATCTGATGTA
TTTTATGTTTGTTAAGATCGTCCTGGAGGGATTCAGAAGTGGAGGTAATC
TGCTTGATCTTGCTATTGATGACGTCACCATCCTTGATCCAGGTATTTGA
AATGACGTTTCAACTTAACATTTTTAGCTATATTTTTTCCACTGCCAGAG
ACCAACGACATCATTGCTAATTGTAACAATTTATGTATTAGAAACTTATA
TATAAGCTGACTTTATATAAGCTGACTTTGATGGTGAATGATAGTTGTGT
CGTAGCAAAGCCCATAAGGTTTTCGTCTGCGACCATGGGCGGCGCCATGT
TTGATTTTGACATCACGCAGGCGACATTTTAGCCGGTTGGAGTTTAACCT
CATGCTAGCTTACAATTTCTGAAGGAGGATATCAGTTGTCTTCTTTGTAT
TAAACCCGATGTATTTGAATTCATATCCACAGACCAGGATGAGTGCAACA
GCAACCCGTGCATGAACAACGGAGTGTGCAGCGATGCTTTATTCTCCTAC
ACCTGTGCCTGTCGGCCGCAATGGGTTGGGTCACATTGTTCTTATGGTAG
GCATGCTCTAACGGTTATCTGCGTTATTCATAAGCATTTAGTTTAAAATT
AAGTGTATGAAGACGCACTGCATTCACAAATCTTTGACCAGTTACACATT
TAGTTGATAATCTAGAGAACGTCTAAATAGTTTGAGCTTAATACATGAAG
ATAAAATGTTTACTTGATTTTCCTTTTTACTAAGTAGTTTTTTTGTTGTT
CTAGGAATTGGGTCTTGTGACTTCGAAGAACCCCTCTCCAACTACATTTA
TCTTCAAGACGACACAGATGACTTCGACTGGAC Coding sequence (CDS) from alignment at Sc0000002:8261275..8262607+ >transcript:BL97246_cuf5 ID=transcript:BL97246_cuf5|Name=transcript:BL97246_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=2100bp|location=Sequence derived from alignment at Sc0000002:8261275..8262607+ (Branchiostoma lanceolatum)
CATTTCCTGTGCATGGGCACCGCGGGGGCGCCTCAGAACGCCGTTGCGAG
GCTGATCAGTCCGGTGTTCGTCCCGCAAGTTCACATCAACAGGGTCCTAA
GGTTCTGGTACTTCAAGAACGTCATCGGAAACTCCGGATTCCGGGTTTAC
CTGATGCTGAACGGGAATCTCGACCCGAACCCGGTCTGGGAGGAAACGGG
CAGAGCTAGCGAATGGCGGATGGCTGAAATCAACATCGACGGAAGGAGTC
AATTCCAGATCGTCCTGGAGGGATTCAGAAGTGGAGGTAATCTGCTTGAT
CTTGCTATTGATGACGTCACCATCCTTGATCCAGACCAGGATGAGTGCAA
CAGCAACCCGTGCATGAACAACGGAGTGTGCAGCGATGCTTTATTCTCCT
ACACCTGTGCCTGTCGGCCGCAATGGGTTGGGTCACATTGTTCTTATGGA
ATTGGGTCTTGTGACTTCGAAGAACCCCTCTCCAACTACATTTATCTTCA
AGACGACACAGATGACTTCGACTGGCATTTCCTGTGCATGGGCACCGCGG
GGGCGCCTCAGAACGCCGTTGCGAGGCTGATCAGTCCGGTGTTCGTCCCG
CAAGTTCACATCAACAGGGTCCTAAGGTTCTGGTACTTCAAGAACGTCAT
CGGAAACTCCGGATTCCGGGTTTACCTGATGCTGAACGGGAATCTCGACC
CGAACCCGGTCTGGGAGGAAACGGGCAGAGCTAGCGAATGGCGGATGGCT
GAAATCAACATCGACGGAAGGAGTCAATTCCAGATCGTCCTGGAGGGATT
CAGAAGTGGAGGTAATCTGCTTGATCTTGCTATTGATGACGTCACCATCC
TTGATCCAGACCAGGATGAGTGCAACAGCAACCCGTGCATGAACAACGGA
GTGTGCAGCGATGCTTTATTCTCCTACACCTGTGCCTGTCGGCCGCAATG
GGTTGGGTCACATTGTTCTTATGGAATTGGGTCTTGTGACTTCGAAGAAC
CCCTCTCCAACTACATTTATCTTCAAGACGACACAGATGACTTCGACTGG
CATTTCCTGTGCATGGGCACCGCGGGGGCGCCTCAGAACGCCGTTGCGAG
GCTGATCAGTCCGGTGTTCGTCCCGCAAGTTCACATCAACAGGGTCCTAA
GGTTCTGGTACTTCAAGAACGTCATCGGAAACTCCGGATTCCGGGTTTAC
CTGATGCTGAACGGGAATCTCGACCCGAACCCGGTCTGGGAGGAAACGGG
CAGAGCTAGCGAATGGCGGATGGCTGAAATCAACATCGACGGAAGGAGTC
AATTCCAGATCGTCCTGGAGGGATTCAGAAGTGGAGGTAATCTGCTTGAT
CTTGCTATTGATGACGTCACCATCCTTGATCCAGACCAGGATGAGTGCAA
CAGCAACCCGTGCATGAACAACGGAGTGTGCAGCGATGCTTTATTCTCCT
ACACCTGTGCCTGTCGGCCGCAATGGGTTGGGTCACATTGTTCTTATGGA
ATTGGGTCTTGTGACTTCGAAGAACCCCTCTCCAACTACATTTATCTTCA
AGACGACACAGATGACTTCGACTGGCATTTCCTGTGCATGGGCACCGCGG
GGGCGCCTCAGAACGCCGTTGCGAGGCTGATCAGTCCGGTGTTCGTCCCG
CAAGTTCACATCAACAGGGTCCTAAGGTTCTGGTACTTCAAGAACGTCAT
CGGAAACTCCGGATTCCGGGTTTACCTGATGCTGAACGGGAATCTCGACC
CGAACCCGGTCTGGGAGGAAACGGGCAGAGCTAGCGAATGGCGGATGGCT
GAAATCAACATCGACGGAAGGAGTCAATTCCAGATCGTCCTGGAGGGATT
CAGAAGTGGAGGTAATCTGCTTGATCTTGCTATTGATGACGTCACCATCC
TTGATCCAGACCAGGATGAGTGCAACAGCAACCCGTGCATGAACAACGGA
GTGTGCAGCGATGCTTTATTCTCCTACACCTGTGCCTGTCGGCCGCAATG
GGTTGGGTCACATTGTTCTTATGGAATTGGGTCTTGTGACTTCGAAGAAC
CCCTCTCCAACTACATTTATCTTCAAGACGACACAGATGACTTCGACTGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000002 | genome | Sc0000002:8261275..8262607 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97246_cuf5 |
| Biotype | protein_coding |
|
