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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97245_cuf4 >transcript:BL97245_cuf4-protein ID=transcript:BL97245_cuf4-protein|Name=transcript:BL97245_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=275bp
VGTFSVFVRPSGQQLGNPVWNKTGDQGDLWQKGEYEVVMQQPFQVVFEAL
IGSSFSSRGDIAVDDVLVEVGQCDSPDFDDCLSNPCQNGGICQDGLGQYS
CTCPSGWHGTQCELDNDACAAYPCGNGGTCNDGPTGYVCICAPGWMGTDC
QQEIDECHQHTDPCHNNGECIDLVNGFYCNCYQGWEGSGCSIDINECLSQ
PCMFGGACNNGLDGTYTCNCLSGYQGQNCEQVLLNPAATYSCDFDTDLCS
WEQDQQTDQTDFEWNSGKCGTWGPN Run BLAST on NCBI mRNA from alignment at Sc0000002:8256777..8260716+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97245_cuf4 ID=transcript:BL97245_cuf4|Name=transcript:BL97245_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=3940bp|location=Sequence derived from alignment at Sc0000002:8256777..8260716+ (Branchiostoma lanceolatum)
CGTGGGCACATTTAGCGTCTTCGTAAGACCGTCTGGACAGCAGCTGGGAA
ACCCTGTCTGGAACAAGACCGGTGATCAGGGCGATCTCTGGCAGAAGGGA
GAGTATGAAGTCGTGATGCAGCAACCTTTTCAGGTACTAGTACATCTTTT
TCATTTGGTGATTGTTTACGTATCTATTTTACTTTCTCTTGGTTCTCCCA
ATGTCACAATGAATGAGCGCCCCCTTCTCCTCGCTCCCTTACGTGTGAAT
GCTTGCGTATACGTGGAAATTGATAAAGCCTTTTTCATTAGATATGTACC
GAAAAAAAGTGTAGTGTCTGCACAGTTTTGCATGTAAACTTGCATTTCTC
TTCTCAGTATAATATTGAATTCAACCGGAAATAAAATGGCGCCTGCATGA
CGTCAAAATCCAGCATGGTGGTGCTCGTGGAAGCCAACCAAAACAGTATA
GGTTTTGCCGTCGCAAACCTGTAATTATTGCTTTAAGTGGCGAAGGGGAG
AAATAGATTAGCTTCAGCAAATGGCATTACTGCTCATAGATCTTCAAGGA
CTAGAGCAACATTTCCTTTTCTTTTCATATTTGAACCTATGTTTGCAATT
CCTTTGTAACTGCATCATCATAATCGCCCAAGTAGATTTTTGTGTGTTTG
TTTGACATTCTCTTCTTTGTCCACAGGTGGTGTTTGAAGCTCTGATTGGC
TCGTCGTTTTCATCGCGAGGAGACATTGCTGTTGATGATGTGCTAGTGGA
GGTTGGACAATGCGATTCGCCAGGTAAAGGTTTTGTATGTGCTCTAATTG
GAACAACTTAGACTGCAGGACTTAACTTTCAATGCCATGTATATGTGTGT
AAATGTAAAGCCCACTACTTAACCCGCTGCCAGTCCCCAACAAAGTTTGG
CTCTTGGTTGGGATTGGCATTAAATCCATCCTATTCTAAGTTTACACCTG
AACGCATCCAAGGACAGATGCCGTTGATAAATATTCATCCATTTTCCCGT
CTTGTCTCTTTAGACTTCGACGACTGTCTGAGTAATCCATGTCAGAATGG
CGGGATTTGCCAGGACGGCTTGGGACAGTACAGCTGCACCTGTCCGTCTG
GCTGGCACGGAACTCAATGTGAACTCGGTGAGTCTTTAGTGTATCTTTCA
ATAAACTATGGTGTCGATTCGAATGGTAGACCAGTTCATTGTCTACTACA
GTTATTTATTAACTTACAACCTGTCTTTTGTTTCAAAAGCAGATTACGCT
TTCTATTTAAGATTATGCGCAATGTTCAAATTCTACACACATACAAAACT
ACCGAATAACGTTTTTAACATTTATTTGCAGACAATGACGCCTGTGCGGC
CTATCCATGTGGAAATGGCGGGACGTGCAACGACGGACCGACTGGATACG
TCTGTATCTGTGCTCCAGGGTGGATGGGAACGGACTGCCAACAGGGTGAT
TATGTCCCATAGTTTATTCTTTAATTGTTTTAATTGCAGTCGGGAATTGA
GACCCGAGATAAACCAATGGGTGGCACTTAATGAGCACGTCGGTAGAACG
TAATTCGTATACGGTAATTAGCCTGGTATTCAAACATATCGTAACTGCCG
AATCTCTTTTGTTCTCTTTGGTCAACGTTGCATAGGACTAACGGCCGTTG
CATAAGATATGTCTTTGAACACAACTAAATGAACCTATAGACGGGATATT
AATATTAGATACGCAAACACGACCTTAAACGCTCACGTTCTGTAGATGTG
CTCACTTAATGTTGGTTCGTGGTGGCTTCACATGAGTATTCAACTTGACT
TAACTCGATTTGACAGAGATACAACTTGATGGGTGTGGGGCATCTTGATG
ATACATATGTTTGACTGAAGTTTAAAGTCAGAACTTTGTTAAGGTATCTG
CGCACGGGGTTAAGACGTCGAATGTTTTAGGACCTAACGAAGGGAATGTA
CATGCTACGCATGCAGTACTACAACTCACGTGTGACGGTGAGGTGGCGCA
TTTGATCATTTCCAGAAATCGACGAGTGTCACCAGCACACGGATCCATGT
CACAACAATGGCGAATGCATCGACCTGGTCAACGGCTTCTACTGCAACTG
TTACCAAGGGTGGGAGGGCTCCGGCTGCAGCATAGGTGAGGACATACCAC
TGCACGAAATGGCCTCGGATCTCGGCGGATACGTACTGGGATTTTTTCTG
TATTTTTGGTGAATACTGCCGGATACTGACGGATCCAACGTAAGTAACGG
ATCCAACTTAATCCGCACGGGCTTTGGAATATTTTCGGAGGAATCCCTGT
ACGTATCCGCCGGGATCCGAGGCCATTTCGTGCAGTGTGCATGTATTTGT
ATGACGGTTAATCTGTAACGGTAATCGACGTTATTTCCGTATACAGTTTA
GATCACTCGCCAACAAGCTTCCGATCAGTCCTCTGACGCTTCTCAAGTTG
AAAATTGAAAGTGAGGAGATTTGTTTTTATCAGAGACAGAGGCTATGGTT
TGATGACAACACTACGCATTCATTGTTTGGATTCAGTTGACAGATGAGAG
AAGAAAATTCAACTTTGAATTACTATAGTTGATCATGTTTGAAGCTGTAG
AGAAATGTGCTATGTTGTTCTTTGAGTACCAAGGGAAAGACTCGGAGGCA
TGTTGTTGATCATGTACCGTCTTGGTAATGAATTGGATACCAAATAAAGC
CATTTACCATTGGAATGGTTGCTTTGTAATGTAGTGTGCACAATTAAGCA
TTTTCAAGAAAGATACATTTCTGAGCCTAAATTTGTCAACTGGTTTGACT
GCGTAACATAGTAGTTTCGCTTTCACGGGGATACAGCTGGTTATATTTTA
CCGAACACCTAAAGCATTCGAATTCAATTCTAAGTGCCAACTCATGAAGA
TGATGCTACCGTATTGGCGAAAACGTGTGAGCAATTTCACCGTTAGTATC
TAATACATATTCATAGCATTTCATGTTTGTCAACTGTAGATATCAACGAG
TGCCTCAGCCAGCCTTGCATGTTTGGAGGGGCCTGCAACAATGGGTTGGA
CGGAACCTACACATGTAACTGTCTATCAGGCTACCAGGGACAGAACTGTG
AACAGGGTAAGTGATATAGATGTTATCGATCATGTGTACATAGGTCAACT
TGATTTTGAATCTTGACTATATGTACTTAGCCACCACACTTGTGAAAAAA
AGATTCTGGGTCGTTGAAAGCAGGTGGCAACATCTAGATTTTTTTGTCGC
AAGGAGCATATTTCAACTTTGAAGATTTGAATATCTCCGGGATGCAACTG
TGTTTCTGTGTCAGGCGGGCTGATGAGGATGACAGAGAGAATGCCGCATT
CGCCATCCTGACAATATTTCAGACCATCACACTTCGAATTCTGAAAAAAA
AAAACACGTTTTCTGGGGACAGGTCATTGAAAGCAGCAACCGTCACCAGA
CGAAAATTTCAACGTCGCAGATTTGAACATCTTCAGGATGCAATTGCTTT
ATGTTTTGCATCTGGCAGGTGGAGGTTGATGAGTGGAACAGGGATGATCG
TATTTACCGACCTGTTTGGGTTATTCAAGTTCACTCGCATGCCCTTTGGC
CTTTCTTTGGCACCAATACTTTCCAAAGGTTAATGCAGCGTTTTCTTGGT
GACCAAAATCTCTAAATCCTGCCAATCCGTTTGAATGATATCATTGTGTT
CTCAAAGGTCTTTGACATATATCTGGACAGTCAAAGCATACATCTCGATA
GACTAGACCTAGTGTTACCCGCTTGAGATTACAGTACCCTGTCCATTTTC
TGTTGCAGTGCTCCTGAACCCGGCAGCTACGTACAGTTGTGACTTTGACA
CGGACCTCTGCAGCTGGGAACAGGATCAGCAAACGGACCAGACAGACTTT
GAGTGGAACAGTGGGAAGTGTGGTACATGGGGACCGAACG Coding sequence (CDS) from alignment at Sc0000002:8256777..8260716+ >transcript:BL97245_cuf4 ID=transcript:BL97245_cuf4|Name=transcript:BL97245_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=5775bp|location=Sequence derived from alignment at Sc0000002:8256777..8260716+ (Branchiostoma lanceolatum)
GTGGGCACATTTAGCGTCTTCGTAAGACCGTCTGGACAGCAGCTGGGAAA
CCCTGTCTGGAACAAGACCGGTGATCAGGGCGATCTCTGGCAGAAGGGAG
AGTATGAAGTCGTGATGCAGCAACCTTTTCAGGTGGTGTTTGAAGCTCTG
ATTGGCTCGTCGTTTTCATCGCGAGGAGACATTGCTGTTGATGATGTGCT
AGTGGAGGTTGGACAATGCGATTCGCCAGACTTCGACGACTGTCTGAGTA
ATCCATGTCAGAATGGCGGGATTTGCCAGGACGGCTTGGGACAGTACAGC
TGCACCTGTCCGTCTGGCTGGCACGGAACTCAATGTGAACTCGACAATGA
CGCCTGTGCGGCCTATCCATGTGGAAATGGCGGGACGTGCAACGACGGAC
CGACTGGATACGTCTGTATCTGTGCTCCAGGGTGGATGGGAACGGACTGC
CAACAGGAAATCGACGAGTGTCACCAGCACACGGATCCATGTCACAACAA
TGGCGAATGCATCGACCTGGTCAACGGCTTCTACTGCAACTGTTACCAAG
GGTGGGAGGGCTCCGGCTGCAGCATAGATATCAACGAGTGCCTCAGCCAG
CCTTGCATGTTTGGAGGGGCCTGCAACAATGGGTTGGACGGAACCTACAC
ATGTAACTGTCTATCAGGCTACCAGGGACAGAACTGTGAACAGGTGCTCC
TGAACCCGGCAGCTACGTACAGTTGTGACTTTGACACGGACCTCTGCAGC
TGGGAACAGGATCAGCAAACGGACCAGACAGACTTTGAGTGGAACAGTGG
GAAGTGTGGTACATGGGGACCGAACGTGGGCACATTTAGCGTCTTCGTAA
GACCGTCTGGACAGCAGCTGGGAAACCCTGTCTGGAACAAGACCGGTGAT
CAGGGCGATCTCTGGCAGAAGGGAGAGTATGAAGTCGTGATGCAGCAACC
TTTTCAGGTGGTGTTTGAAGCTCTGATTGGCTCGTCGTTTTCATCGCGAG
GAGACATTGCTGTTGATGATGTGCTAGTGGAGGTTGGACAATGCGATTCG
CCAGACTTCGACGACTGTCTGAGTAATCCATGTCAGAATGGCGGGATTTG
CCAGGACGGCTTGGGACAGTACAGCTGCACCTGTCCGTCTGGCTGGCACG
GAACTCAATGTGAACTCGACAATGACGCCTGTGCGGCCTATCCATGTGGA
AATGGCGGGACGTGCAACGACGGACCGACTGGATACGTCTGTATCTGTGC
TCCAGGGTGGATGGGAACGGACTGCCAACAGGAAATCGACGAGTGTCACC
AGCACACGGATCCATGTCACAACAATGGCGAATGCATCGACCTGGTCAAC
GGCTTCTACTGCAACTGTTACCAAGGGTGGGAGGGCTCCGGCTGCAGCAT
AGATATCAACGAGTGCCTCAGCCAGCCTTGCATGTTTGGAGGGGCCTGCA
ACAATGGGTTGGACGGAACCTACACATGTAACTGTCTATCAGGCTACCAG
GGACAGAACTGTGAACAGGTGCTCCTGAACCCGGCAGCTACGTACAGTTG
TGACTTTGACACGGACCTCTGCAGCTGGGAACAGGATCAGCAAACGGACC
AGACAGACTTTGAGTGGAACAGTGGGAAGTGTGGTACATGGGGACCGAAC
GTGGGCACATTTAGCGTCTTCGTAAGACCGTCTGGACAGCAGCTGGGAAA
CCCTGTCTGGAACAAGACCGGTGATCAGGGCGATCTCTGGCAGAAGGGAG
AGTATGAAGTCGTGATGCAGCAACCTTTTCAGGTGGTGTTTGAAGCTCTG
ATTGGCTCGTCGTTTTCATCGCGAGGAGACATTGCTGTTGATGATGTGCT
AGTGGAGGTTGGACAATGCGATTCGCCAGACTTCGACGACTGTCTGAGTA
ATCCATGTCAGAATGGCGGGATTTGCCAGGACGGCTTGGGACAGTACAGC
TGCACCTGTCCGTCTGGCTGGCACGGAACTCAATGTGAACTCGACAATGA
CGCCTGTGCGGCCTATCCATGTGGAAATGGCGGGACGTGCAACGACGGAC
CGACTGGATACGTCTGTATCTGTGCTCCAGGGTGGATGGGAACGGACTGC
CAACAGGAAATCGACGAGTGTCACCAGCACACGGATCCATGTCACAACAA
TGGCGAATGCATCGACCTGGTCAACGGCTTCTACTGCAACTGTTACCAAG
GGTGGGAGGGCTCCGGCTGCAGCATAGATATCAACGAGTGCCTCAGCCAG
CCTTGCATGTTTGGAGGGGCCTGCAACAATGGGTTGGACGGAACCTACAC
ATGTAACTGTCTATCAGGCTACCAGGGACAGAACTGTGAACAGGTGCTCC
TGAACCCGGCAGCTACGTACAGTTGTGACTTTGACACGGACCTCTGCAGC
TGGGAACAGGATCAGCAAACGGACCAGACAGACTTTGAGTGGAACAGTGG
GAAGTGTGGTACATGGGGACCGAACGTGGGCACATTTAGCGTCTTCGTAA
GACCGTCTGGACAGCAGCTGGGAAACCCTGTCTGGAACAAGACCGGTGAT
CAGGGCGATCTCTGGCAGAAGGGAGAGTATGAAGTCGTGATGCAGCAACC
TTTTCAGGTGGTGTTTGAAGCTCTGATTGGCTCGTCGTTTTCATCGCGAG
GAGACATTGCTGTTGATGATGTGCTAGTGGAGGTTGGACAATGCGATTCG
CCAGACTTCGACGACTGTCTGAGTAATCCATGTCAGAATGGCGGGATTTG
CCAGGACGGCTTGGGACAGTACAGCTGCACCTGTCCGTCTGGCTGGCACG
GAACTCAATGTGAACTCGACAATGACGCCTGTGCGGCCTATCCATGTGGA
AATGGCGGGACGTGCAACGACGGACCGACTGGATACGTCTGTATCTGTGC
TCCAGGGTGGATGGGAACGGACTGCCAACAGGAAATCGACGAGTGTCACC
AGCACACGGATCCATGTCACAACAATGGCGAATGCATCGACCTGGTCAAC
GGCTTCTACTGCAACTGTTACCAAGGGTGGGAGGGCTCCGGCTGCAGCAT
AGATATCAACGAGTGCCTCAGCCAGCCTTGCATGTTTGGAGGGGCCTGCA
ACAATGGGTTGGACGGAACCTACACATGTAACTGTCTATCAGGCTACCAG
GGACAGAACTGTGAACAGGTGCTCCTGAACCCGGCAGCTACGTACAGTTG
TGACTTTGACACGGACCTCTGCAGCTGGGAACAGGATCAGCAAACGGACC
AGACAGACTTTGAGTGGAACAGTGGGAAGTGTGGTACATGGGGACCGAAC
GTGGGCACATTTAGCGTCTTCGTAAGACCGTCTGGACAGCAGCTGGGAAA
CCCTGTCTGGAACAAGACCGGTGATCAGGGCGATCTCTGGCAGAAGGGAG
AGTATGAAGTCGTGATGCAGCAACCTTTTCAGGTGGTGTTTGAAGCTCTG
ATTGGCTCGTCGTTTTCATCGCGAGGAGACATTGCTGTTGATGATGTGCT
AGTGGAGGTTGGACAATGCGATTCGCCAGACTTCGACGACTGTCTGAGTA
ATCCATGTCAGAATGGCGGGATTTGCCAGGACGGCTTGGGACAGTACAGC
TGCACCTGTCCGTCTGGCTGGCACGGAACTCAATGTGAACTCGACAATGA
CGCCTGTGCGGCCTATCCATGTGGAAATGGCGGGACGTGCAACGACGGAC
CGACTGGATACGTCTGTATCTGTGCTCCAGGGTGGATGGGAACGGACTGC
CAACAGGAAATCGACGAGTGTCACCAGCACACGGATCCATGTCACAACAA
TGGCGAATGCATCGACCTGGTCAACGGCTTCTACTGCAACTGTTACCAAG
GGTGGGAGGGCTCCGGCTGCAGCATAGATATCAACGAGTGCCTCAGCCAG
CCTTGCATGTTTGGAGGGGCCTGCAACAATGGGTTGGACGGAACCTACAC
ATGTAACTGTCTATCAGGCTACCAGGGACAGAACTGTGAACAGGTGCTCC
TGAACCCGGCAGCTACGTACAGTTGTGACTTTGACACGGACCTCTGCAGC
TGGGAACAGGATCAGCAAACGGACCAGACAGACTTTGAGTGGAACAGTGG
GAAGTGTGGTACATGGGGACCGAACGTGGGCACATTTAGCGTCTTCGTAA
GACCGTCTGGACAGCAGCTGGGAAACCCTGTCTGGAACAAGACCGGTGAT
CAGGGCGATCTCTGGCAGAAGGGAGAGTATGAAGTCGTGATGCAGCAACC
TTTTCAGGTGGTGTTTGAAGCTCTGATTGGCTCGTCGTTTTCATCGCGAG
GAGACATTGCTGTTGATGATGTGCTAGTGGAGGTTGGACAATGCGATTCG
CCAGACTTCGACGACTGTCTGAGTAATCCATGTCAGAATGGCGGGATTTG
CCAGGACGGCTTGGGACAGTACAGCTGCACCTGTCCGTCTGGCTGGCACG
GAACTCAATGTGAACTCGACAATGACGCCTGTGCGGCCTATCCATGTGGA
AATGGCGGGACGTGCAACGACGGACCGACTGGATACGTCTGTATCTGTGC
TCCAGGGTGGATGGGAACGGACTGCCAACAGGAAATCGACGAGTGTCACC
AGCACACGGATCCATGTCACAACAATGGCGAATGCATCGACCTGGTCAAC
GGCTTCTACTGCAACTGTTACCAAGGGTGGGAGGGCTCCGGCTGCAGCAT
AGATATCAACGAGTGCCTCAGCCAGCCTTGCATGTTTGGAGGGGCCTGCA
ACAATGGGTTGGACGGAACCTACACATGTAACTGTCTATCAGGCTACCAG
GGACAGAACTGTGAACAGGTGCTCCTGAACCCGGCAGCTACGTACAGTTG
TGACTTTGACACGGACCTCTGCAGCTGGGAACAGGATCAGCAAACGGACC
AGACAGACTTTGAGTGGAACAGTGGGAAGTGTGGTACATGGGGACCGAAC
GTGGGCACATTTAGCGTCTTCGTAAGACCGTCTGGACAGCAGCTGGGAAA
CCCTGTCTGGAACAAGACCGGTGATCAGGGCGATCTCTGGCAGAAGGGAG
AGTATGAAGTCGTGATGCAGCAACCTTTTCAGGTGGTGTTTGAAGCTCTG
ATTGGCTCGTCGTTTTCATCGCGAGGAGACATTGCTGTTGATGATGTGCT
AGTGGAGGTTGGACAATGCGATTCGCCAGACTTCGACGACTGTCTGAGTA
ATCCATGTCAGAATGGCGGGATTTGCCAGGACGGCTTGGGACAGTACAGC
TGCACCTGTCCGTCTGGCTGGCACGGAACTCAATGTGAACTCGACAATGA
CGCCTGTGCGGCCTATCCATGTGGAAATGGCGGGACGTGCAACGACGGAC
CGACTGGATACGTCTGTATCTGTGCTCCAGGGTGGATGGGAACGGACTGC
CAACAGGAAATCGACGAGTGTCACCAGCACACGGATCCATGTCACAACAA
TGGCGAATGCATCGACCTGGTCAACGGCTTCTACTGCAACTGTTACCAAG
GGTGGGAGGGCTCCGGCTGCAGCATAGATATCAACGAGTGCCTCAGCCAG
CCTTGCATGTTTGGAGGGGCCTGCAACAATGGGTTGGACGGAACCTACAC
ATGTAACTGTCTATCAGGCTACCAGGGACAGAACTGTGAACAGGTGCTCC
TGAACCCGGCAGCTACGTACAGTTGTGACTTTGACACGGACCTCTGCAGC
TGGGAACAGGATCAGCAAACGGACCAGACAGACTTTGAGTGGAACAGTGG
GAAGTGTGGTACATGGGGACCGAAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000002 | genome | Sc0000002:8256777..8260716 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97245_cuf4 |
| Biotype | protein_coding |
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