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transcript:BL97245_cuf4 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97245_cuf4
Unique Nametranscript:BL97245_cuf4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97245_cuf4

>transcript:BL97245_cuf4-protein ID=transcript:BL97245_cuf4-protein|Name=transcript:BL97245_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=275bp
VGTFSVFVRPSGQQLGNPVWNKTGDQGDLWQKGEYEVVMQQPFQVVFEAL
IGSSFSSRGDIAVDDVLVEVGQCDSPDFDDCLSNPCQNGGICQDGLGQYS
CTCPSGWHGTQCELDNDACAAYPCGNGGTCNDGPTGYVCICAPGWMGTDC
QQEIDECHQHTDPCHNNGECIDLVNGFYCNCYQGWEGSGCSIDINECLSQ
PCMFGGACNNGLDGTYTCNCLSGYQGQNCEQVLLNPAATYSCDFDTDLCS
WEQDQQTDQTDFEWNSGKCGTWGPN
Run BLAST on NCBI

mRNA from alignment at Sc0000002:8256777..8260716+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97245_cuf4 ID=transcript:BL97245_cuf4|Name=transcript:BL97245_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=3940bp|location=Sequence derived from alignment at Sc0000002:8256777..8260716+ (Branchiostoma lanceolatum)
CGTGGGCACATTTAGCGTCTTCGTAAGACCGTCTGGACAGCAGCTGGGAA ACCCTGTCTGGAACAAGACCGGTGATCAGGGCGATCTCTGGCAGAAGGGA GAGTATGAAGTCGTGATGCAGCAACCTTTTCAGGTACTAGTACATCTTTT TCATTTGGTGATTGTTTACGTATCTATTTTACTTTCTCTTGGTTCTCCCA ATGTCACAATGAATGAGCGCCCCCTTCTCCTCGCTCCCTTACGTGTGAAT GCTTGCGTATACGTGGAAATTGATAAAGCCTTTTTCATTAGATATGTACC GAAAAAAAGTGTAGTGTCTGCACAGTTTTGCATGTAAACTTGCATTTCTC TTCTCAGTATAATATTGAATTCAACCGGAAATAAAATGGCGCCTGCATGA CGTCAAAATCCAGCATGGTGGTGCTCGTGGAAGCCAACCAAAACAGTATA GGTTTTGCCGTCGCAAACCTGTAATTATTGCTTTAAGTGGCGAAGGGGAG AAATAGATTAGCTTCAGCAAATGGCATTACTGCTCATAGATCTTCAAGGA CTAGAGCAACATTTCCTTTTCTTTTCATATTTGAACCTATGTTTGCAATT CCTTTGTAACTGCATCATCATAATCGCCCAAGTAGATTTTTGTGTGTTTG TTTGACATTCTCTTCTTTGTCCACAGGTGGTGTTTGAAGCTCTGATTGGC TCGTCGTTTTCATCGCGAGGAGACATTGCTGTTGATGATGTGCTAGTGGA GGTTGGACAATGCGATTCGCCAGGTAAAGGTTTTGTATGTGCTCTAATTG GAACAACTTAGACTGCAGGACTTAACTTTCAATGCCATGTATATGTGTGT AAATGTAAAGCCCACTACTTAACCCGCTGCCAGTCCCCAACAAAGTTTGG CTCTTGGTTGGGATTGGCATTAAATCCATCCTATTCTAAGTTTACACCTG AACGCATCCAAGGACAGATGCCGTTGATAAATATTCATCCATTTTCCCGT CTTGTCTCTTTAGACTTCGACGACTGTCTGAGTAATCCATGTCAGAATGG CGGGATTTGCCAGGACGGCTTGGGACAGTACAGCTGCACCTGTCCGTCTG GCTGGCACGGAACTCAATGTGAACTCGGTGAGTCTTTAGTGTATCTTTCA ATAAACTATGGTGTCGATTCGAATGGTAGACCAGTTCATTGTCTACTACA GTTATTTATTAACTTACAACCTGTCTTTTGTTTCAAAAGCAGATTACGCT TTCTATTTAAGATTATGCGCAATGTTCAAATTCTACACACATACAAAACT ACCGAATAACGTTTTTAACATTTATTTGCAGACAATGACGCCTGTGCGGC CTATCCATGTGGAAATGGCGGGACGTGCAACGACGGACCGACTGGATACG TCTGTATCTGTGCTCCAGGGTGGATGGGAACGGACTGCCAACAGGGTGAT TATGTCCCATAGTTTATTCTTTAATTGTTTTAATTGCAGTCGGGAATTGA GACCCGAGATAAACCAATGGGTGGCACTTAATGAGCACGTCGGTAGAACG TAATTCGTATACGGTAATTAGCCTGGTATTCAAACATATCGTAACTGCCG AATCTCTTTTGTTCTCTTTGGTCAACGTTGCATAGGACTAACGGCCGTTG CATAAGATATGTCTTTGAACACAACTAAATGAACCTATAGACGGGATATT AATATTAGATACGCAAACACGACCTTAAACGCTCACGTTCTGTAGATGTG CTCACTTAATGTTGGTTCGTGGTGGCTTCACATGAGTATTCAACTTGACT TAACTCGATTTGACAGAGATACAACTTGATGGGTGTGGGGCATCTTGATG ATACATATGTTTGACTGAAGTTTAAAGTCAGAACTTTGTTAAGGTATCTG CGCACGGGGTTAAGACGTCGAATGTTTTAGGACCTAACGAAGGGAATGTA CATGCTACGCATGCAGTACTACAACTCACGTGTGACGGTGAGGTGGCGCA TTTGATCATTTCCAGAAATCGACGAGTGTCACCAGCACACGGATCCATGT CACAACAATGGCGAATGCATCGACCTGGTCAACGGCTTCTACTGCAACTG TTACCAAGGGTGGGAGGGCTCCGGCTGCAGCATAGGTGAGGACATACCAC TGCACGAAATGGCCTCGGATCTCGGCGGATACGTACTGGGATTTTTTCTG TATTTTTGGTGAATACTGCCGGATACTGACGGATCCAACGTAAGTAACGG ATCCAACTTAATCCGCACGGGCTTTGGAATATTTTCGGAGGAATCCCTGT ACGTATCCGCCGGGATCCGAGGCCATTTCGTGCAGTGTGCATGTATTTGT ATGACGGTTAATCTGTAACGGTAATCGACGTTATTTCCGTATACAGTTTA GATCACTCGCCAACAAGCTTCCGATCAGTCCTCTGACGCTTCTCAAGTTG AAAATTGAAAGTGAGGAGATTTGTTTTTATCAGAGACAGAGGCTATGGTT TGATGACAACACTACGCATTCATTGTTTGGATTCAGTTGACAGATGAGAG AAGAAAATTCAACTTTGAATTACTATAGTTGATCATGTTTGAAGCTGTAG AGAAATGTGCTATGTTGTTCTTTGAGTACCAAGGGAAAGACTCGGAGGCA TGTTGTTGATCATGTACCGTCTTGGTAATGAATTGGATACCAAATAAAGC CATTTACCATTGGAATGGTTGCTTTGTAATGTAGTGTGCACAATTAAGCA TTTTCAAGAAAGATACATTTCTGAGCCTAAATTTGTCAACTGGTTTGACT GCGTAACATAGTAGTTTCGCTTTCACGGGGATACAGCTGGTTATATTTTA CCGAACACCTAAAGCATTCGAATTCAATTCTAAGTGCCAACTCATGAAGA TGATGCTACCGTATTGGCGAAAACGTGTGAGCAATTTCACCGTTAGTATC TAATACATATTCATAGCATTTCATGTTTGTCAACTGTAGATATCAACGAG TGCCTCAGCCAGCCTTGCATGTTTGGAGGGGCCTGCAACAATGGGTTGGA CGGAACCTACACATGTAACTGTCTATCAGGCTACCAGGGACAGAACTGTG AACAGGGTAAGTGATATAGATGTTATCGATCATGTGTACATAGGTCAACT TGATTTTGAATCTTGACTATATGTACTTAGCCACCACACTTGTGAAAAAA AGATTCTGGGTCGTTGAAAGCAGGTGGCAACATCTAGATTTTTTTGTCGC AAGGAGCATATTTCAACTTTGAAGATTTGAATATCTCCGGGATGCAACTG TGTTTCTGTGTCAGGCGGGCTGATGAGGATGACAGAGAGAATGCCGCATT CGCCATCCTGACAATATTTCAGACCATCACACTTCGAATTCTGAAAAAAA AAAACACGTTTTCTGGGGACAGGTCATTGAAAGCAGCAACCGTCACCAGA CGAAAATTTCAACGTCGCAGATTTGAACATCTTCAGGATGCAATTGCTTT ATGTTTTGCATCTGGCAGGTGGAGGTTGATGAGTGGAACAGGGATGATCG TATTTACCGACCTGTTTGGGTTATTCAAGTTCACTCGCATGCCCTTTGGC CTTTCTTTGGCACCAATACTTTCCAAAGGTTAATGCAGCGTTTTCTTGGT GACCAAAATCTCTAAATCCTGCCAATCCGTTTGAATGATATCATTGTGTT CTCAAAGGTCTTTGACATATATCTGGACAGTCAAAGCATACATCTCGATA GACTAGACCTAGTGTTACCCGCTTGAGATTACAGTACCCTGTCCATTTTC TGTTGCAGTGCTCCTGAACCCGGCAGCTACGTACAGTTGTGACTTTGACA CGGACCTCTGCAGCTGGGAACAGGATCAGCAAACGGACCAGACAGACTTT GAGTGGAACAGTGGGAAGTGTGGTACATGGGGACCGAACG

Coding sequence (CDS) from alignment at Sc0000002:8256777..8260716+

>transcript:BL97245_cuf4 ID=transcript:BL97245_cuf4|Name=transcript:BL97245_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=5775bp|location=Sequence derived from alignment at Sc0000002:8256777..8260716+ (Branchiostoma lanceolatum)
GTGGGCACATTTAGCGTCTTCGTAAGACCGTCTGGACAGCAGCTGGGAAA
CCCTGTCTGGAACAAGACCGGTGATCAGGGCGATCTCTGGCAGAAGGGAG
AGTATGAAGTCGTGATGCAGCAACCTTTTCAGGTGGTGTTTGAAGCTCTG
ATTGGCTCGTCGTTTTCATCGCGAGGAGACATTGCTGTTGATGATGTGCT
AGTGGAGGTTGGACAATGCGATTCGCCAGACTTCGACGACTGTCTGAGTA
ATCCATGTCAGAATGGCGGGATTTGCCAGGACGGCTTGGGACAGTACAGC
TGCACCTGTCCGTCTGGCTGGCACGGAACTCAATGTGAACTCGACAATGA
CGCCTGTGCGGCCTATCCATGTGGAAATGGCGGGACGTGCAACGACGGAC
CGACTGGATACGTCTGTATCTGTGCTCCAGGGTGGATGGGAACGGACTGC
CAACAGGAAATCGACGAGTGTCACCAGCACACGGATCCATGTCACAACAA
TGGCGAATGCATCGACCTGGTCAACGGCTTCTACTGCAACTGTTACCAAG
GGTGGGAGGGCTCCGGCTGCAGCATAGATATCAACGAGTGCCTCAGCCAG
CCTTGCATGTTTGGAGGGGCCTGCAACAATGGGTTGGACGGAACCTACAC
ATGTAACTGTCTATCAGGCTACCAGGGACAGAACTGTGAACAGGTGCTCC
TGAACCCGGCAGCTACGTACAGTTGTGACTTTGACACGGACCTCTGCAGC
TGGGAACAGGATCAGCAAACGGACCAGACAGACTTTGAGTGGAACAGTGG
GAAGTGTGGTACATGGGGACCGAACGTGGGCACATTTAGCGTCTTCGTAA
GACCGTCTGGACAGCAGCTGGGAAACCCTGTCTGGAACAAGACCGGTGAT
CAGGGCGATCTCTGGCAGAAGGGAGAGTATGAAGTCGTGATGCAGCAACC
TTTTCAGGTGGTGTTTGAAGCTCTGATTGGCTCGTCGTTTTCATCGCGAG
GAGACATTGCTGTTGATGATGTGCTAGTGGAGGTTGGACAATGCGATTCG
CCAGACTTCGACGACTGTCTGAGTAATCCATGTCAGAATGGCGGGATTTG
CCAGGACGGCTTGGGACAGTACAGCTGCACCTGTCCGTCTGGCTGGCACG
GAACTCAATGTGAACTCGACAATGACGCCTGTGCGGCCTATCCATGTGGA
AATGGCGGGACGTGCAACGACGGACCGACTGGATACGTCTGTATCTGTGC
TCCAGGGTGGATGGGAACGGACTGCCAACAGGAAATCGACGAGTGTCACC
AGCACACGGATCCATGTCACAACAATGGCGAATGCATCGACCTGGTCAAC
GGCTTCTACTGCAACTGTTACCAAGGGTGGGAGGGCTCCGGCTGCAGCAT
AGATATCAACGAGTGCCTCAGCCAGCCTTGCATGTTTGGAGGGGCCTGCA
ACAATGGGTTGGACGGAACCTACACATGTAACTGTCTATCAGGCTACCAG
GGACAGAACTGTGAACAGGTGCTCCTGAACCCGGCAGCTACGTACAGTTG
TGACTTTGACACGGACCTCTGCAGCTGGGAACAGGATCAGCAAACGGACC
AGACAGACTTTGAGTGGAACAGTGGGAAGTGTGGTACATGGGGACCGAAC
GTGGGCACATTTAGCGTCTTCGTAAGACCGTCTGGACAGCAGCTGGGAAA
CCCTGTCTGGAACAAGACCGGTGATCAGGGCGATCTCTGGCAGAAGGGAG
AGTATGAAGTCGTGATGCAGCAACCTTTTCAGGTGGTGTTTGAAGCTCTG
ATTGGCTCGTCGTTTTCATCGCGAGGAGACATTGCTGTTGATGATGTGCT
AGTGGAGGTTGGACAATGCGATTCGCCAGACTTCGACGACTGTCTGAGTA
ATCCATGTCAGAATGGCGGGATTTGCCAGGACGGCTTGGGACAGTACAGC
TGCACCTGTCCGTCTGGCTGGCACGGAACTCAATGTGAACTCGACAATGA
CGCCTGTGCGGCCTATCCATGTGGAAATGGCGGGACGTGCAACGACGGAC
CGACTGGATACGTCTGTATCTGTGCTCCAGGGTGGATGGGAACGGACTGC
CAACAGGAAATCGACGAGTGTCACCAGCACACGGATCCATGTCACAACAA
TGGCGAATGCATCGACCTGGTCAACGGCTTCTACTGCAACTGTTACCAAG
GGTGGGAGGGCTCCGGCTGCAGCATAGATATCAACGAGTGCCTCAGCCAG
CCTTGCATGTTTGGAGGGGCCTGCAACAATGGGTTGGACGGAACCTACAC
ATGTAACTGTCTATCAGGCTACCAGGGACAGAACTGTGAACAGGTGCTCC
TGAACCCGGCAGCTACGTACAGTTGTGACTTTGACACGGACCTCTGCAGC
TGGGAACAGGATCAGCAAACGGACCAGACAGACTTTGAGTGGAACAGTGG
GAAGTGTGGTACATGGGGACCGAACGTGGGCACATTTAGCGTCTTCGTAA
GACCGTCTGGACAGCAGCTGGGAAACCCTGTCTGGAACAAGACCGGTGAT
CAGGGCGATCTCTGGCAGAAGGGAGAGTATGAAGTCGTGATGCAGCAACC
TTTTCAGGTGGTGTTTGAAGCTCTGATTGGCTCGTCGTTTTCATCGCGAG
GAGACATTGCTGTTGATGATGTGCTAGTGGAGGTTGGACAATGCGATTCG
CCAGACTTCGACGACTGTCTGAGTAATCCATGTCAGAATGGCGGGATTTG
CCAGGACGGCTTGGGACAGTACAGCTGCACCTGTCCGTCTGGCTGGCACG
GAACTCAATGTGAACTCGACAATGACGCCTGTGCGGCCTATCCATGTGGA
AATGGCGGGACGTGCAACGACGGACCGACTGGATACGTCTGTATCTGTGC
TCCAGGGTGGATGGGAACGGACTGCCAACAGGAAATCGACGAGTGTCACC
AGCACACGGATCCATGTCACAACAATGGCGAATGCATCGACCTGGTCAAC
GGCTTCTACTGCAACTGTTACCAAGGGTGGGAGGGCTCCGGCTGCAGCAT
AGATATCAACGAGTGCCTCAGCCAGCCTTGCATGTTTGGAGGGGCCTGCA
ACAATGGGTTGGACGGAACCTACACATGTAACTGTCTATCAGGCTACCAG
GGACAGAACTGTGAACAGGTGCTCCTGAACCCGGCAGCTACGTACAGTTG
TGACTTTGACACGGACCTCTGCAGCTGGGAACAGGATCAGCAAACGGACC
AGACAGACTTTGAGTGGAACAGTGGGAAGTGTGGTACATGGGGACCGAAC
GTGGGCACATTTAGCGTCTTCGTAAGACCGTCTGGACAGCAGCTGGGAAA
CCCTGTCTGGAACAAGACCGGTGATCAGGGCGATCTCTGGCAGAAGGGAG
AGTATGAAGTCGTGATGCAGCAACCTTTTCAGGTGGTGTTTGAAGCTCTG
ATTGGCTCGTCGTTTTCATCGCGAGGAGACATTGCTGTTGATGATGTGCT
AGTGGAGGTTGGACAATGCGATTCGCCAGACTTCGACGACTGTCTGAGTA
ATCCATGTCAGAATGGCGGGATTTGCCAGGACGGCTTGGGACAGTACAGC
TGCACCTGTCCGTCTGGCTGGCACGGAACTCAATGTGAACTCGACAATGA
CGCCTGTGCGGCCTATCCATGTGGAAATGGCGGGACGTGCAACGACGGAC
CGACTGGATACGTCTGTATCTGTGCTCCAGGGTGGATGGGAACGGACTGC
CAACAGGAAATCGACGAGTGTCACCAGCACACGGATCCATGTCACAACAA
TGGCGAATGCATCGACCTGGTCAACGGCTTCTACTGCAACTGTTACCAAG
GGTGGGAGGGCTCCGGCTGCAGCATAGATATCAACGAGTGCCTCAGCCAG
CCTTGCATGTTTGGAGGGGCCTGCAACAATGGGTTGGACGGAACCTACAC
ATGTAACTGTCTATCAGGCTACCAGGGACAGAACTGTGAACAGGTGCTCC
TGAACCCGGCAGCTACGTACAGTTGTGACTTTGACACGGACCTCTGCAGC
TGGGAACAGGATCAGCAAACGGACCAGACAGACTTTGAGTGGAACAGTGG
GAAGTGTGGTACATGGGGACCGAACGTGGGCACATTTAGCGTCTTCGTAA
GACCGTCTGGACAGCAGCTGGGAAACCCTGTCTGGAACAAGACCGGTGAT
CAGGGCGATCTCTGGCAGAAGGGAGAGTATGAAGTCGTGATGCAGCAACC
TTTTCAGGTGGTGTTTGAAGCTCTGATTGGCTCGTCGTTTTCATCGCGAG
GAGACATTGCTGTTGATGATGTGCTAGTGGAGGTTGGACAATGCGATTCG
CCAGACTTCGACGACTGTCTGAGTAATCCATGTCAGAATGGCGGGATTTG
CCAGGACGGCTTGGGACAGTACAGCTGCACCTGTCCGTCTGGCTGGCACG
GAACTCAATGTGAACTCGACAATGACGCCTGTGCGGCCTATCCATGTGGA
AATGGCGGGACGTGCAACGACGGACCGACTGGATACGTCTGTATCTGTGC
TCCAGGGTGGATGGGAACGGACTGCCAACAGGAAATCGACGAGTGTCACC
AGCACACGGATCCATGTCACAACAATGGCGAATGCATCGACCTGGTCAAC
GGCTTCTACTGCAACTGTTACCAAGGGTGGGAGGGCTCCGGCTGCAGCAT
AGATATCAACGAGTGCCTCAGCCAGCCTTGCATGTTTGGAGGGGCCTGCA
ACAATGGGTTGGACGGAACCTACACATGTAACTGTCTATCAGGCTACCAG
GGACAGAACTGTGAACAGGTGCTCCTGAACCCGGCAGCTACGTACAGTTG
TGACTTTGACACGGACCTCTGCAGCTGGGAACAGGATCAGCAAACGGACC
AGACAGACTTTGAGTGGAACAGTGGGAAGTGTGGTACATGGGGACCGAAC
GTGGGCACATTTAGCGTCTTCGTAAGACCGTCTGGACAGCAGCTGGGAAA
CCCTGTCTGGAACAAGACCGGTGATCAGGGCGATCTCTGGCAGAAGGGAG
AGTATGAAGTCGTGATGCAGCAACCTTTTCAGGTGGTGTTTGAAGCTCTG
ATTGGCTCGTCGTTTTCATCGCGAGGAGACATTGCTGTTGATGATGTGCT
AGTGGAGGTTGGACAATGCGATTCGCCAGACTTCGACGACTGTCTGAGTA
ATCCATGTCAGAATGGCGGGATTTGCCAGGACGGCTTGGGACAGTACAGC
TGCACCTGTCCGTCTGGCTGGCACGGAACTCAATGTGAACTCGACAATGA
CGCCTGTGCGGCCTATCCATGTGGAAATGGCGGGACGTGCAACGACGGAC
CGACTGGATACGTCTGTATCTGTGCTCCAGGGTGGATGGGAACGGACTGC
CAACAGGAAATCGACGAGTGTCACCAGCACACGGATCCATGTCACAACAA
TGGCGAATGCATCGACCTGGTCAACGGCTTCTACTGCAACTGTTACCAAG
GGTGGGAGGGCTCCGGCTGCAGCATAGATATCAACGAGTGCCTCAGCCAG
CCTTGCATGTTTGGAGGGGCCTGCAACAATGGGTTGGACGGAACCTACAC
ATGTAACTGTCTATCAGGCTACCAGGGACAGAACTGTGAACAGGTGCTCC
TGAACCCGGCAGCTACGTACAGTTGTGACTTTGACACGGACCTCTGCAGC
TGGGAACAGGATCAGCAAACGGACCAGACAGACTTTGAGTGGAACAGTGG
GAAGTGTGGTACATGGGGACCGAAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97245gene:BL97245Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97245_cuf4transcript:BL97245_cuf4-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97245_cuf4-E1BL97245_cuf4-E1-1564476830-39539Branchiostoma lanceolatumexon
BL97245_cuf4-E2BL97245_cuf4-E2-1564476830-39541Branchiostoma lanceolatumexon
BL97245_cuf4-E3BL97245_cuf4-E3-1564476830-39543Branchiostoma lanceolatumexon
BL97245_cuf4-E4BL97245_cuf4-E4-1564476830-39545Branchiostoma lanceolatumexon
BL97245_cuf4-E5BL97245_cuf4-E5-1564476830-39547Branchiostoma lanceolatumexon
BL97245_cuf4-E6BL97245_cuf4-E6-1564476830-39549Branchiostoma lanceolatumexon
BL97245_cuf4-E7BL97245_cuf4-E7-1564476830-39552Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000002genomeSc0000002:8256777..8260716 +
Properties
Property NameValue
Transcript idBL97245_cuf4
Biotypeprotein_coding