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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97243_cuf1 >transcript:BL97243_cuf1-protein ID=transcript:BL97243_cuf1-protein|Name=transcript:BL97243_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=226bp
MNTQGARDTWVSKYKLQYSDDAASWTTFGDFSNVDTEFDGSQNGNLLALN
EPVEARYVRIKPTLWNNNEIRLKLELYGCGAAGIDECASNPCQHGSTCVD
AVNWYRCYCSDGWTGDNCAQDINECNQNVCQNGGVCSNTPGSYSCTCPAG
FSGANCEATVLEGTNFVTCDFDTDYCGWQFGDENQLSVSREQQNGCGSYG
PSGDHTQADGSGSYLCMQSSSSDPQG Run BLAST on NCBI mRNA from alignment at Sc0000002:8247206..8250479+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97243_cuf1 ID=transcript:BL97243_cuf1|Name=transcript:BL97243_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3274bp|location=Sequence derived from alignment at Sc0000002:8247206..8250479+ (Branchiostoma lanceolatum)
TGGAAATGTGACCATAGCATAAAATTTCTGACTGTTACAAAATTTCATCC
TGTGGCTTGAGTAACTGTTTTGGGGCGTATCTTATCACCTGGATGTCTAA
CCTTAATCAATGGATCGATATTACTTTCACTTTCAGCTAAAGCGGATCGA
TATTACTTTCACTTTCAGGTGGACTTGCAGAGACGCACAGCTGTGACGGG
GATGAACACGCAGGGTGCGAGGGACACCTGGGTGTCCAAGTACAAACTGC
AGTACAGCGATGACGCGGCGAGCTGGACCACGTTTGGAGACTTCAGCAAC
GTAGACACGGTAGGAGGGTTTTTATAGATTTGCGTAGCAAAAGCTTTGTT
GGATCCGTTGGCATGTATGGTTGCTGCCATTTTATGACGTCGCAGGGTAG
CCATACCATTTCATTGGGAGGGGTGTTTTTTTCGCTAGCGTTCTATCTAT
CTTTAACAAACCGGCACTGTCAACTATCACACATTCAACTCAAATGAAAA
GAACAATTCAATACCAATTCATATCTATAAAAAGAGCCCGCCGTAATCGC
TAAACTAACATAGCAAACCTGACGTATATGTAGCACAAATACTTAACTCT
AGTTAGCTTATGATTCTTTAATAAACTTGTGGACGTACTGACTGATAAGT
ATCTACTTCCAGCTCAGTAAAGGACAAGAAATAGTCATGACTGTAAGTAC
CAGAGTTATCAATCACGGATTGATGTGTTCAAGAGAACCATTTTCCGAGA
ACCATAGTAGAATGAAACTCGTTGTCATCAAATTCTGTAGGAGCATCTTC
AGGATTCACTAATAGCTGTAAAGAACGGTTGTCTGCCACTGCTAGCCCTT
GGATCCAAACCTCTGCTTGGAGAATAACTTGCTGTCACTGTTTGTATTTC
AATAGCATAGCAACGCAAATATTACCGAAAATAGGAACAAATTTGTGTTG
AGAAACAATTCTATCATAATAGCGTTTTCATTGACATTTTTCAGGAGTTT
GACGGCAGTCAGAATGGAAACCTCCTGGCTCTGAACGAACCAGTGGAAGC
TCGGTACGTGCGGATCAAACCCACTCTGTGGAACAACAACGAAATCCGTC
TGAAGTTGGAACTCTACGGTTGTGGCGCTGCAGGTAAGGTTTCTGGCTCC
TCAAATATTCCCAAGCGTCTAGCCAACTTTCCACATCAGTATTCATGATG
AGTGTCCCATGTGACTTGTTTCCTTGTCCCAAGTTTGTCCCTCGACAATT
TTACACATAGACGAATTGCATTTTACATTTGCCATGTTCTCCCCCTAAAA
TGTCACTTAATCGTATATAAGGTTGCCACCCTCTTATGTCAGGTCCGCCG
CCGCATTCATCAACTATAACGTCCCTGGATTTCATATAGAGGCTGTTTTT
TACATCCCTTGTTGTAAATCATACAGTAGGCTGCAAAGTCCTGCACGATT
TTATCTCAGAATTGGTACACTTTATGTAGATGCCAAGTCTAGCAACGTTA
TCATCAAACCAATTGAATATAGTGGATCATAAGAGATGTCGTTATCTTTT
TCCCCAGGTATCGATGAATGTGCAAGCAACCCCTGTCAGCACGGTTCTAC
CTGTGTGGACGCTGTGAACTGGTACAGGTGTTACTGTTCAGACGGTTGGA
CGGGTGACAACTGTGCACAGGGTGAGACAAATTAGTCTGTTTCCATGCAA
CTTTTTAATGGGCTGTAGCGTGCGTAGTCCTCGTCACACATAGGACCTAC
TCCTACCTGCTATCATCAAGTCTCAAAAGAAGATGCGTCAGGCATTTCAG
CTATGAAGAAGACCACAGTTAGCTAAAAATTAGGTTTTCTCAAGAGTGCC
CTTGATAAACTGCCTCTGTCACACATAGCCGACCATGGTCTCTCAACCTT
CTTCAAACCATGGTTGGGAGTTAAGGCCCTGTCACACATAGCCGACCATG
GCCCCCTAACCTTCTCTAGACCACGGTTGGGAGTTAGTCGCGAGCAAGGT
CATCTATGTTTGGGAGTTGATCGGTGAGGTTGTCAAAAAGTATTTCAAAG
TCGTCTGCACCAACCGAATTTTGACAAATCGAACACGGGAAACTCTTAAT
CATCTTATATGCGAACTGAGGAACCATGGTCAGCCCTGCGTGACTGGGGC
TTTATCAGAGTTATTCTCTTCTGGCACTAGCTTGGTATCTAATGTGTGAT
GTTCTTCCTCAATTGTAGATATCAATGAATGCAACCAGAACGTTTGTCAA
AACGGAGGAGTTTGTTCCAACACTCCCGGGAGCTACTCCTGTACGTGCCC
TGCTGGGTTCAGTGGAGCAAACTGTGAAGCAAGTAAGTCTGACTTATATG
ATAATCATTCGGAAACTATTCCTTATCGCTCTGACATTTGTAATTGAATA
TTTAAAATAATCGCATTTTAAAGAAACGTACACTGACATGTTAAACAAAA
TGTTTAAGATAGTTGCAATAGAATATGATTATGATTTAGACTGACAAACA
CAACGAAACGAATCTTAACATAAAAGTGTAAATTATAGTAAAATGAAGAT
TGTTTTAGGCATTGTGTTACCTTCATGACATTGTTTCAACTTTGTATATT
GTTTCAATAGCTGTTTTAGAAGGAACAAACTTCGTGACCTGTGACTTCGA
CACGGACTACTGTGGGTGGCAGTTCGGAGACGAGAACCAGCTGAGTGTTT
CTAGAGAGCAACAAAACGGATGCGGTTCGTATGGCCCATCGGGCGACCAC
ACGCAAGCAGGTACAGATATTCTTTAAAACTGTATTTGCCCAGCAGTATA
CTCAAAGTGTTTCCGTTTTAATTATTAACTTTTTATGTACGGTGGAAATA
TTAATGTCAACTCTCATAATTCCGTCGGGTACCATAGACCGTCTCAGGTC
TTCAATCCACTTCAACTATCGGACTCTAGACACGTGTTTTCATGCATGTG
TGACGTCAGCAATGGGTCAAGGATGGAAGTCAATAGCGTCCCCCGTCCCG
TTTGAGAGAATATTGCTGCGACCTGATGTAGATGGCCTTCGTTTCTCCTC
TTACATAGTAATCCTGTTCGGTATCCAGAAATCTAGCACCCTAAAAATCT
GGGATTCAATATGAGTGTACTGTGAAACCTCTGATGACAAGTAACTTGGT
CGCCTGTTGTCTAAAAATCTGTTTTTTATATTTGTTCTTAATTGCCTTAA
ACGACACTATACCATTGCAGACGGATCGGGCTCCTACCTGTGCATGCAGA
GCAGCTCCAGCGATCCACAAGGCG Coding sequence (CDS) from alignment at Sc0000002:8247206..8250479+ >transcript:BL97243_cuf1 ID=transcript:BL97243_cuf1|Name=transcript:BL97243_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=4068bp|location=Sequence derived from alignment at Sc0000002:8247206..8250479+ (Branchiostoma lanceolatum)
ATGAACACGCAGGGTGCGAGGGACACCTGGGTGTCCAAGTACAAACTGCA
GTACAGCGATGACGCGGCGAGCTGGACCACGTTTGGAGACTTCAGCAACG
TAGACACGGAGTTTGACGGCAGTCAGAATGGAAACCTCCTGGCTCTGAAC
GAACCAGTGGAAGCTCGGTACGTGCGGATCAAACCCACTCTGTGGAACAA
CAACGAAATCCGTCTGAAGTTGGAACTCTACGGTTGTGGCGCTGCAGGTA
TCGATGAATGTGCAAGCAACCCCTGTCAGCACGGTTCTACCTGTGTGGAC
GCTGTGAACTGGTACAGGTGTTACTGTTCAGACGGTTGGACGGGTGACAA
CTGTGCACAGGATATCAATGAATGCAACCAGAACGTTTGTCAAAACGGAG
GAGTTTGTTCCAACACTCCCGGGAGCTACTCCTGTACGTGCCCTGCTGGG
TTCAGTGGAGCAAACTGTGAAGCAACTGTTTTAGAAGGAACAAACTTCGT
GACCTGTGACTTCGACACGGACTACTGTGGGTGGCAGTTCGGAGACGAGA
ACCAGCTGAGTGTTTCTAGAGAGCAACAAAACGGATGCGGTTCGTATGGC
CCATCGGGCGACCACACGCAAGCAGACGGATCGGGCTCCTACCTGTGCAT
GCAGAGCAGCTCCAGCGATCCACAAGGCATGAACACGCAGGGTGCGAGGG
ACACCTGGGTGTCCAAGTACAAACTGCAGTACAGCGATGACGCGGCGAGC
TGGACCACGTTTGGAGACTTCAGCAACGTAGACACGGAGTTTGACGGCAG
TCAGAATGGAAACCTCCTGGCTCTGAACGAACCAGTGGAAGCTCGGTACG
TGCGGATCAAACCCACTCTGTGGAACAACAACGAAATCCGTCTGAAGTTG
GAACTCTACGGTTGTGGCGCTGCAGGTATCGATGAATGTGCAAGCAACCC
CTGTCAGCACGGTTCTACCTGTGTGGACGCTGTGAACTGGTACAGGTGTT
ACTGTTCAGACGGTTGGACGGGTGACAACTGTGCACAGGATATCAATGAA
TGCAACCAGAACGTTTGTCAAAACGGAGGAGTTTGTTCCAACACTCCCGG
GAGCTACTCCTGTACGTGCCCTGCTGGGTTCAGTGGAGCAAACTGTGAAG
CAACTGTTTTAGAAGGAACAAACTTCGTGACCTGTGACTTCGACACGGAC
TACTGTGGGTGGCAGTTCGGAGACGAGAACCAGCTGAGTGTTTCTAGAGA
GCAACAAAACGGATGCGGTTCGTATGGCCCATCGGGCGACCACACGCAAG
CAGACGGATCGGGCTCCTACCTGTGCATGCAGAGCAGCTCCAGCGATCCA
CAAGGCATGAACACGCAGGGTGCGAGGGACACCTGGGTGTCCAAGTACAA
ACTGCAGTACAGCGATGACGCGGCGAGCTGGACCACGTTTGGAGACTTCA
GCAACGTAGACACGGAGTTTGACGGCAGTCAGAATGGAAACCTCCTGGCT
CTGAACGAACCAGTGGAAGCTCGGTACGTGCGGATCAAACCCACTCTGTG
GAACAACAACGAAATCCGTCTGAAGTTGGAACTCTACGGTTGTGGCGCTG
CAGGTATCGATGAATGTGCAAGCAACCCCTGTCAGCACGGTTCTACCTGT
GTGGACGCTGTGAACTGGTACAGGTGTTACTGTTCAGACGGTTGGACGGG
TGACAACTGTGCACAGGATATCAATGAATGCAACCAGAACGTTTGTCAAA
ACGGAGGAGTTTGTTCCAACACTCCCGGGAGCTACTCCTGTACGTGCCCT
GCTGGGTTCAGTGGAGCAAACTGTGAAGCAACTGTTTTAGAAGGAACAAA
CTTCGTGACCTGTGACTTCGACACGGACTACTGTGGGTGGCAGTTCGGAG
ACGAGAACCAGCTGAGTGTTTCTAGAGAGCAACAAAACGGATGCGGTTCG
TATGGCCCATCGGGCGACCACACGCAAGCAGACGGATCGGGCTCCTACCT
GTGCATGCAGAGCAGCTCCAGCGATCCACAAGGCATGAACACGCAGGGTG
CGAGGGACACCTGGGTGTCCAAGTACAAACTGCAGTACAGCGATGACGCG
GCGAGCTGGACCACGTTTGGAGACTTCAGCAACGTAGACACGGAGTTTGA
CGGCAGTCAGAATGGAAACCTCCTGGCTCTGAACGAACCAGTGGAAGCTC
GGTACGTGCGGATCAAACCCACTCTGTGGAACAACAACGAAATCCGTCTG
AAGTTGGAACTCTACGGTTGTGGCGCTGCAGGTATCGATGAATGTGCAAG
CAACCCCTGTCAGCACGGTTCTACCTGTGTGGACGCTGTGAACTGGTACA
GGTGTTACTGTTCAGACGGTTGGACGGGTGACAACTGTGCACAGGATATC
AATGAATGCAACCAGAACGTTTGTCAAAACGGAGGAGTTTGTTCCAACAC
TCCCGGGAGCTACTCCTGTACGTGCCCTGCTGGGTTCAGTGGAGCAAACT
GTGAAGCAACTGTTTTAGAAGGAACAAACTTCGTGACCTGTGACTTCGAC
ACGGACTACTGTGGGTGGCAGTTCGGAGACGAGAACCAGCTGAGTGTTTC
TAGAGAGCAACAAAACGGATGCGGTTCGTATGGCCCATCGGGCGACCACA
CGCAAGCAGACGGATCGGGCTCCTACCTGTGCATGCAGAGCAGCTCCAGC
GATCCACAAGGCATGAACACGCAGGGTGCGAGGGACACCTGGGTGTCCAA
GTACAAACTGCAGTACAGCGATGACGCGGCGAGCTGGACCACGTTTGGAG
ACTTCAGCAACGTAGACACGGAGTTTGACGGCAGTCAGAATGGAAACCTC
CTGGCTCTGAACGAACCAGTGGAAGCTCGGTACGTGCGGATCAAACCCAC
TCTGTGGAACAACAACGAAATCCGTCTGAAGTTGGAACTCTACGGTTGTG
GCGCTGCAGGTATCGATGAATGTGCAAGCAACCCCTGTCAGCACGGTTCT
ACCTGTGTGGACGCTGTGAACTGGTACAGGTGTTACTGTTCAGACGGTTG
GACGGGTGACAACTGTGCACAGGATATCAATGAATGCAACCAGAACGTTT
GTCAAAACGGAGGAGTTTGTTCCAACACTCCCGGGAGCTACTCCTGTACG
TGCCCTGCTGGGTTCAGTGGAGCAAACTGTGAAGCAACTGTTTTAGAAGG
AACAAACTTCGTGACCTGTGACTTCGACACGGACTACTGTGGGTGGCAGT
TCGGAGACGAGAACCAGCTGAGTGTTTCTAGAGAGCAACAAAACGGATGC
GGTTCGTATGGCCCATCGGGCGACCACACGCAAGCAGACGGATCGGGCTC
CTACCTGTGCATGCAGAGCAGCTCCAGCGATCCACAAGGCATGAACACGC
AGGGTGCGAGGGACACCTGGGTGTCCAAGTACAAACTGCAGTACAGCGAT
GACGCGGCGAGCTGGACCACGTTTGGAGACTTCAGCAACGTAGACACGGA
GTTTGACGGCAGTCAGAATGGAAACCTCCTGGCTCTGAACGAACCAGTGG
AAGCTCGGTACGTGCGGATCAAACCCACTCTGTGGAACAACAACGAAATC
CGTCTGAAGTTGGAACTCTACGGTTGTGGCGCTGCAGGTATCGATGAATG
TGCAAGCAACCCCTGTCAGCACGGTTCTACCTGTGTGGACGCTGTGAACT
GGTACAGGTGTTACTGTTCAGACGGTTGGACGGGTGACAACTGTGCACAG
GATATCAATGAATGCAACCAGAACGTTTGTCAAAACGGAGGAGTTTGTTC
CAACACTCCCGGGAGCTACTCCTGTACGTGCCCTGCTGGGTTCAGTGGAG
CAAACTGTGAAGCAACTGTTTTAGAAGGAACAAACTTCGTGACCTGTGAC
TTCGACACGGACTACTGTGGGTGGCAGTTCGGAGACGAGAACCAGCTGAG
TGTTTCTAGAGAGCAACAAAACGGATGCGGTTCGTATGGCCCATCGGGCG
ACCACACGCAAGCAGACGGATCGGGCTCCTACCTGTGCATGCAGAGCAGC
TCCAGCGATCCACAAGGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000002 | genome | Sc0000002:8247206..8250479 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97243_cuf1 |
| Biotype | protein_coding |
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