Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

transcript:BL97242_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97242_cuf0
Unique Nametranscript:BL97242_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97242_cuf0

>transcript:BL97242_cuf0-protein ID=transcript:BL97242_cuf0-protein|Name=transcript:BL97242_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=223bp
LLKQNCNFDVPGDLCGYIQSQGDDFDWTQDTGATPTSFTGPTDDVTAGQT
GTAGYYMYIETSSPQSRGDKAQLLTPLLEPTAERCLTFYYHMYGTSVGTL
NVYKISRGQRPQLWTQSGAQGNQWNYAEIDYDSKYQYQFEFEGVISGSYG
DIGLDHIIMKNGPCSGSNAQCGSPLGMEDGSIPDGSISASTSKPGNPASA
GRLNSNGYWSPQDSDQDPWIQVK
Run BLAST on NCBI

mRNA from alignment at Sc0000002:8244443..8246385+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97242_cuf0 ID=transcript:BL97242_cuf0|Name=transcript:BL97242_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1943bp|location=Sequence derived from alignment at Sc0000002:8244443..8246385+ (Branchiostoma lanceolatum)
TTACTGAAACAGAACTGTAATTTTGACGTGCCCGGGGACCTATGCGGGTA CATCCAGTCCCAGGGGGACGACTTCGACTGGACACAGGACACCGGGGCTA CCCCCACATCCTTCACCGGACCCACAGATGACGTCACGGCGGGACAAACT GGTACTGCAGGTAAAGCAAATACATTTTTATATATTTTTGTCATTCTAGG TTTCTTATCAGGGTCTATTACCTATTACCTCGACCAAGAAGTGGGTGAGT GAGAGCATGTGTGAGGGTGGGTGTTCGTCAGAACTCGAGAAGTTGTGAAT AGATGTTTATGTTTTTTGGCAAGTAAGTGTTGGCAAACCAAAGGACAAGT TCCTTTATATTATGGGCCCCCAACTGACTTTCATTGGTACTGTAAGAGAA CATAGGTTTGGTATCCCGTGTTCGGCTCGTAAAGAAGTGATATAGAATCT ATTCACCCTTATGTGGACGCCCTCGTTTACACGGGTTTATGTCTATTTCG AAACATAGACAGCAGAATAACTTGCACCCTTTTTAACGCTATAGGTTATT ACATGTACATCGAGACATCATCACCCCAGAGTCGAGGCGACAAGGCCCAG TTGCTGACGCCGCTGCTGGAGCCCACGGCGGAGAGATGTCTCACGTTCTA CTACCACATGTACGGGACGTCTGTCGGCACGTTGAACGTGTACAAGATTT CCAGAGGACAGCGACCCCAGCTGTGGACCCAGTCGGGAGCCCAGGGGAAC CAGTGGAACTATGCGGAGATCGATTATGACAGCAAGTACCAATACCAGGT TTGTGTTATATACTTTTGTATTTTTTTTTTCTTTCTGTTCAGTATTTGAC GGTTATGGTAATTTGTACCTCTGTCCTCTTGCCATGTGTATTTCGTTTGT TCTGTACTTTCTTTAGGTGTCTTTCGAGCTCACAAGGACTGGGCGCTAAA AAGCGCAAGCCAATAAAGCCTCGTTCACTCACTCACTCACTCACTCGCTC ATTCGAATTCATTTCTTATTCATTCATTCATTCATTCATCTTTTTTATAT CAAAAATATGAAGAAAACAAATTTTGAAAAACAAGAGACTTATGTTACCA ACTAATGATTTCAATTTATTTCAACATGCAGTTTGAATTTGAAGGGGTGA TATCTGGTAGTTACGGTGACATCGGGCTTGATCACATCATCATGAAGAAT GGACCATGTAGCGGCAGTAACGGTAAGCTATGTTTTGACAGTATTACTAG TGCTAAGTACATTTTCCTGTAACACTCGGCGACATAGTCTTTTGCATGCT GCCTTATAACGACTTCGACACCTTGAATTCCAGATGTCACATAAGGACAC TTCGTTTGGATTTCTAAGACAACACTGTGTGTTGACCCTAACATCATTAA CAGTTCATTAATAACTACGTACAATTAAGAACATCTACTGTTATAAATGT GACGAAGGCTTAATTGAGAAGAGCTAACAAGTTAATGAATCAAATATTTA TTCTGCAATTACTTAATATATAGTACAGTAATAGCTTTTTTCCACTAACT GCAAAACTCTGGAATTCCCTCCCAGCCCACTGCTTTCCCCCCGAATACAA CCTACAAACCTTCAAAACAAACACACACCGCTGTCTCTCACCTATGCCAC ATTAGTTCAATTAGTTCAATGCCGACAAGCGGCCTCTTACGGTCTTGCAT TGAGCGAGATCGTTAAAAACAAGAAAAAAACCCGTTAACCATATAATGAT CCGGACAATTTTTCCTACTCTAATATAGCTCAATGTGGCAGTCCTCTCGG CATGGAGGACGGCTCCATCCCGGACGGGTCCATCTCTGCGTCCACGTCCA AACCGGGCAACCCAGCTTCGGCCGGACGCCTCAACTCCAACGGCTACTGG TCACCGCAGGACAGCGATCAGGATCCGTGGATTCAGGTAAAGC

Coding sequence (CDS) from alignment at Sc0000002:8244443..8246385+

>transcript:BL97242_cuf0 ID=transcript:BL97242_cuf0|Name=transcript:BL97242_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2676bp|location=Sequence derived from alignment at Sc0000002:8244443..8246385+ (Branchiostoma lanceolatum)
TTACTGAAACAGAACTGTAATTTTGACGTGCCCGGGGACCTATGCGGGTA
CATCCAGTCCCAGGGGGACGACTTCGACTGGACACAGGACACCGGGGCTA
CCCCCACATCCTTCACCGGACCCACAGATGACGTCACGGCGGGACAAACT
GGTACTGCAGGTTATTACATGTACATCGAGACATCATCACCCCAGAGTCG
AGGCGACAAGGCCCAGTTGCTGACGCCGCTGCTGGAGCCCACGGCGGAGA
GATGTCTCACGTTCTACTACCACATGTACGGGACGTCTGTCGGCACGTTG
AACGTGTACAAGATTTCCAGAGGACAGCGACCCCAGCTGTGGACCCAGTC
GGGAGCCCAGGGGAACCAGTGGAACTATGCGGAGATCGATTATGACAGCA
AGTACCAATACCAGTTTGAATTTGAAGGGGTGATATCTGGTAGTTACGGT
GACATCGGGCTTGATCACATCATCATGAAGAATGGACCATGTAGCGGCAG
TAACGCTCAATGTGGCAGTCCTCTCGGCATGGAGGACGGCTCCATCCCGG
ACGGGTCCATCTCTGCGTCCACGTCCAAACCGGGCAACCCAGCTTCGGCC
GGACGCCTCAACTCCAACGGCTACTGGTCACCGCAGGACAGCGATCAGGA
TCCGTGGATTCAGGTAAAGTTACTGAAACAGAACTGTAATTTTGACGTGC
CCGGGGACCTATGCGGGTACATCCAGTCCCAGGGGGACGACTTCGACTGG
ACACAGGACACCGGGGCTACCCCCACATCCTTCACCGGACCCACAGATGA
CGTCACGGCGGGACAAACTGGTACTGCAGGTTATTACATGTACATCGAGA
CATCATCACCCCAGAGTCGAGGCGACAAGGCCCAGTTGCTGACGCCGCTG
CTGGAGCCCACGGCGGAGAGATGTCTCACGTTCTACTACCACATGTACGG
GACGTCTGTCGGCACGTTGAACGTGTACAAGATTTCCAGAGGACAGCGAC
CCCAGCTGTGGACCCAGTCGGGAGCCCAGGGGAACCAGTGGAACTATGCG
GAGATCGATTATGACAGCAAGTACCAATACCAGTTTGAATTTGAAGGGGT
GATATCTGGTAGTTACGGTGACATCGGGCTTGATCACATCATCATGAAGA
ATGGACCATGTAGCGGCAGTAACGCTCAATGTGGCAGTCCTCTCGGCATG
GAGGACGGCTCCATCCCGGACGGGTCCATCTCTGCGTCCACGTCCAAACC
GGGCAACCCAGCTTCGGCCGGACGCCTCAACTCCAACGGCTACTGGTCAC
CGCAGGACAGCGATCAGGATCCGTGGATTCAGGTAAAGTTACTGAAACAG
AACTGTAATTTTGACGTGCCCGGGGACCTATGCGGGTACATCCAGTCCCA
GGGGGACGACTTCGACTGGACACAGGACACCGGGGCTACCCCCACATCCT
TCACCGGACCCACAGATGACGTCACGGCGGGACAAACTGGTACTGCAGGT
TATTACATGTACATCGAGACATCATCACCCCAGAGTCGAGGCGACAAGGC
CCAGTTGCTGACGCCGCTGCTGGAGCCCACGGCGGAGAGATGTCTCACGT
TCTACTACCACATGTACGGGACGTCTGTCGGCACGTTGAACGTGTACAAG
ATTTCCAGAGGACAGCGACCCCAGCTGTGGACCCAGTCGGGAGCCCAGGG
GAACCAGTGGAACTATGCGGAGATCGATTATGACAGCAAGTACCAATACC
AGTTTGAATTTGAAGGGGTGATATCTGGTAGTTACGGTGACATCGGGCTT
GATCACATCATCATGAAGAATGGACCATGTAGCGGCAGTAACGCTCAATG
TGGCAGTCCTCTCGGCATGGAGGACGGCTCCATCCCGGACGGGTCCATCT
CTGCGTCCACGTCCAAACCGGGCAACCCAGCTTCGGCCGGACGCCTCAAC
TCCAACGGCTACTGGTCACCGCAGGACAGCGATCAGGATCCGTGGATTCA
GGTAAAGTTACTGAAACAGAACTGTAATTTTGACGTGCCCGGGGACCTAT
GCGGGTACATCCAGTCCCAGGGGGACGACTTCGACTGGACACAGGACACC
GGGGCTACCCCCACATCCTTCACCGGACCCACAGATGACGTCACGGCGGG
ACAAACTGGTACTGCAGGTTATTACATGTACATCGAGACATCATCACCCC
AGAGTCGAGGCGACAAGGCCCAGTTGCTGACGCCGCTGCTGGAGCCCACG
GCGGAGAGATGTCTCACGTTCTACTACCACATGTACGGGACGTCTGTCGG
CACGTTGAACGTGTACAAGATTTCCAGAGGACAGCGACCCCAGCTGTGGA
CCCAGTCGGGAGCCCAGGGGAACCAGTGGAACTATGCGGAGATCGATTAT
GACAGCAAGTACCAATACCAGTTTGAATTTGAAGGGGTGATATCTGGTAG
TTACGGTGACATCGGGCTTGATCACATCATCATGAAGAATGGACCATGTA
GCGGCAGTAACGCTCAATGTGGCAGTCCTCTCGGCATGGAGGACGGCTCC
ATCCCGGACGGGTCCATCTCTGCGTCCACGTCCAAACCGGGCAACCCAGC
TTCGGCCGGACGCCTCAACTCCAACGGCTACTGGTCACCGCAGGACAGCG
ATCAGGATCCGTGGATTCAGGTAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97242gene:BL97242Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97242_cuf0transcript:BL97242_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97242_cuf0-E1BL97242_cuf0-E1-1564476830-39499Branchiostoma lanceolatumexon
BL97242_cuf0-E2BL97242_cuf0-E2-1564476830-39501Branchiostoma lanceolatumexon
BL97242_cuf0-E3BL97242_cuf0-E3-1564476830-39503Branchiostoma lanceolatumexon
BL97242_cuf0-E4BL97242_cuf0-E4-1564476830-39506Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000002genomeSc0000002:8244443..8246385 +
Properties
Property NameValue
Transcript idBL97242_cuf0
Biotypeprotein_coding