transcript:BL97240_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97240_cuf2
Unique Nametranscript:BL97240_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97240_cuf2

>transcript:BL97240_cuf2-protein ID=transcript:BL97240_cuf2-protein|Name=transcript:BL97240_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=151bp
QMVTSAQVSSSQRSGVKVSVPLTFIRLGSSQERRQQDESDKPNSNDDAGE
VVPSSCPMEDDLAVPDSQMSQSQTHVIIHRPDPMRDDADPIEDVDSDQAL
YIKSRLRASDSPALSTVTERTESSRASTHSPPSAKQRPSISMEPISEEQN
F
Run BLAST on NCBI

mRNA from alignment at Sc0000002:6226937..6229200+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97240_cuf2 ID=transcript:BL97240_cuf2|Name=transcript:BL97240_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2264bp|location=Sequence derived from alignment at Sc0000002:6226937..6229200+ (Branchiostoma lanceolatum)
GCAGATGGTTACTTCTGGTAGGAACAAAAATGTGTTACTAATCAGAACAG
ACACATTTTCTTGAAAATATATAGATTGTACATACTTGCAACAATTTAAG
TCGAGTACCAGAGTTATCAACCCTGGATTGAGGTGCTCAAAAATCTGCTT
TTCAAAGAATTATTGTATAGTAGTGGAACTCGTTGCCTCTAAGTATAATA
GGGACTTCCTCACTGGATAGCTTTAAACAATGCTTGCAGCTAGCTGTGCA
AATGTTAGAGATGGACAGGTCGTTCAGTGTAATACAGACCGGCTGCTGCT
GCACTGCATGCCTGCGAAGCTGGTGTGGTACACGGAAGGGCCACAGCTAC
ACCTGCTATACAGATACAGATACAGATACAGACTGAAGTCATGGCAACAA
TTGTACAACCGTACACAAGTTCATAGGCATGAACTTAGCCAAGTGTTACA
TTTTAGGCAACTTTGTTACACTGCTTTTACTCTGTTGCTTGCATCCTTTT
GATGGTCATTAAGTAACAACCTAAATTTCTCTTCCTTCCCTCCTCCAGCA
CAAGTGAGCTCCTCCCAGAGATCTGGTGTGAAGGTTTCTGTACCGCTGAC
TTTCATCCGTCTGGGAAGCAGCCAGGAGAGGAGACAACAGGACGAATCAG
ACAAACCTAACAGCAACGGTAAAGATTGTCCCTAGTTAAAAAATTTTGTG
TGTGTTCACGTGTTCGGAGGAAGGCCATAAGAGAGCTTTCTTTCTTTCAT
GGAAGATAGTTTCATCCTGGGCTGTCTGCAGATTTAGTTTTTTTTCTGTC
CCACTCACTGGTTGGAGCCCATGTTGTTGATTTTTGATGTTCAATCTTGT
GCTAATACAAACATACATTTTCATTAGTTTCTTGTCATGAAGTTCAGAGT
TTTGGGAACAAGTAAATTTCCGTCCTGGGACAAATGGAGGGACGGGTCCT
GCAGACAGCCATGGTTTTGATCATAATCTTGAATTCAAAGTCATTTTGGT
CCCACTTTACCTATTTTCAACAGCTTGTAGCCCTGAAGTCCCCCTTAAAG
TCTCTAACTATCATTCATTCACATAATTCTGTTACAATTTTAGATGATGC
AGGTGAAGTTGTGCCCAGTTCCTGCCCCATGGAAGATGACCTGGCTGTTC
CAGACTCTCAGATGTCACAGTCTCAGACCCATGTGTAAGTTGTACACACT
GTTTCCATATTCTTTTGAAGGCAAAAACTTTCTTTGAAAAGATTTGTGAT
GATGTAAAATAAATCAATGAAATTGTATAATTCTAAATCAGATTTTCCTT
CCTCTGATTTAGAATCATACATAGACCTGACCCCATGAGAGATGATGCAG
ACCCCATTGAGGACGTAGACTCTGATCAAGCACTCTACATCAAATCCAGG
CTAAGGTAAAGCAGTGGAAATCTGATGTTGACCTCCTTTGGACCAATCTT
GTTGCTCCTCTTTGTCGGCAGAAGGTATTCTATTGTGAAGAGTTCCGGAA
ATATGTTATTTTTGGTAGTTAAGAAAAGACTCTGTTCTATTAGATCATGT
TAAATTGACATACTGATCACTTTCCCATAACTATTCACCAAAACTGTCCT
TTAACAACATTGTGCACTGTATTCCATTTCAATACTTATATCTAACCTTC
TCCCTGCTGCACAACCCTGTCACCAATACAAAGTTGGGGCCTCAACAGTC
CTGTTAGCCATTAGCCAAAAAAATGGGAATGGTCCATTTTAAAACTGAAA
CAAATTTAGCAGACAATGTACAATATCAAAACTGTATCTCTCCCTCCAGA
GCATCCGACAGCCCTGCCCTGAGCACAGTGACCGAGCGTACAGAGAGCAG
CCGTGCCAGCACCCACTCCCCTCCTTCTGCCAAACAGAGGCCTTCCATCT
CCATGGAGCCGATATCAGGTATATGCACCTCTTTACAAAGCTTAGTGTAC
AAAAAGTAACTGTTATATTCACAATGACTAGTAGTAACTGTATCATGTAC
AGTGTCTTGGAAAGTTTCAAAGTTACACTGATTTGGATTGTCTGTTGTAA
TTTGTAGACAATTTGTAACTAAGAACAGTTCTTTATCATTGTTATCATCA
TCATCATTATTATTATAGTGTGAACTATGATGTGAACTATGCATAGATGC
AGCACTCAATGTACATTGTACATTATGTATATGACACCTAGCAGTGCTAG
AAAAAGAAGTGACCAAGTTGCAAATTATGCTGTTTTTTTTCCCAACAGAA
GAACAAAATTTCCC

Coding sequence (CDS) from alignment at Sc0000002:6226937..6229200+

>transcript:BL97240_cuf2 ID=transcript:BL97240_cuf2|Name=transcript:BL97240_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2718bp|location=Sequence derived from alignment at Sc0000002:6226937..6229200+ (Branchiostoma lanceolatum)
CAGATGGTTACTTCTGCACAAGTGAGCTCCTCCCAGAGATCTGGTGTGAA
GGTTTCTGTACCGCTGACTTTCATCCGTCTGGGAAGCAGCCAGGAGAGGA
GACAACAGGACGAATCAGACAAACCTAACAGCAACGATGATGCAGGTGAA
GTTGTGCCCAGTTCCTGCCCCATGGAAGATGACCTGGCTGTTCCAGACTC
TCAGATGTCACAGTCTCAGACCCATGTAATCATACATAGACCTGACCCCA
TGAGAGATGATGCAGACCCCATTGAGGACGTAGACTCTGATCAAGCACTC
TACATCAAATCCAGGCTAAGAGCATCCGACAGCCCTGCCCTGAGCACAGT
GACCGAGCGTACAGAGAGCAGCCGTGCCAGCACCCACTCCCCTCCTTCTG
CCAAACAGAGGCCTTCCATCTCCATGGAGCCGATATCAGAAGAACAAAAT
TTCCAGATGGTTACTTCTGCACAAGTGAGCTCCTCCCAGAGATCTGGTGT
GAAGGTTTCTGTACCGCTGACTTTCATCCGTCTGGGAAGCAGCCAGGAGA
GGAGACAACAGGACGAATCAGACAAACCTAACAGCAACGATGATGCAGGT
GAAGTTGTGCCCAGTTCCTGCCCCATGGAAGATGACCTGGCTGTTCCAGA
CTCTCAGATGTCACAGTCTCAGACCCATGTAATCATACATAGACCTGACC
CCATGAGAGATGATGCAGACCCCATTGAGGACGTAGACTCTGATCAAGCA
CTCTACATCAAATCCAGGCTAAGAGCATCCGACAGCCCTGCCCTGAGCAC
AGTGACCGAGCGTACAGAGAGCAGCCGTGCCAGCACCCACTCCCCTCCTT
CTGCCAAACAGAGGCCTTCCATCTCCATGGAGCCGATATCAGAAGAACAA
AATTTCCAGATGGTTACTTCTGCACAAGTGAGCTCCTCCCAGAGATCTGG
TGTGAAGGTTTCTGTACCGCTGACTTTCATCCGTCTGGGAAGCAGCCAGG
AGAGGAGACAACAGGACGAATCAGACAAACCTAACAGCAACGATGATGCA
GGTGAAGTTGTGCCCAGTTCCTGCCCCATGGAAGATGACCTGGCTGTTCC
AGACTCTCAGATGTCACAGTCTCAGACCCATGTAATCATACATAGACCTG
ACCCCATGAGAGATGATGCAGACCCCATTGAGGACGTAGACTCTGATCAA
GCACTCTACATCAAATCCAGGCTAAGAGCATCCGACAGCCCTGCCCTGAG
CACAGTGACCGAGCGTACAGAGAGCAGCCGTGCCAGCACCCACTCCCCTC
CTTCTGCCAAACAGAGGCCTTCCATCTCCATGGAGCCGATATCAGAAGAA
CAAAATTTCCAGATGGTTACTTCTGCACAAGTGAGCTCCTCCCAGAGATC
TGGTGTGAAGGTTTCTGTACCGCTGACTTTCATCCGTCTGGGAAGCAGCC
AGGAGAGGAGACAACAGGACGAATCAGACAAACCTAACAGCAACGATGAT
GCAGGTGAAGTTGTGCCCAGTTCCTGCCCCATGGAAGATGACCTGGCTGT
TCCAGACTCTCAGATGTCACAGTCTCAGACCCATGTAATCATACATAGAC
CTGACCCCATGAGAGATGATGCAGACCCCATTGAGGACGTAGACTCTGAT
CAAGCACTCTACATCAAATCCAGGCTAAGAGCATCCGACAGCCCTGCCCT
GAGCACAGTGACCGAGCGTACAGAGAGCAGCCGTGCCAGCACCCACTCCC
CTCCTTCTGCCAAACAGAGGCCTTCCATCTCCATGGAGCCGATATCAGAA
GAACAAAATTTCCAGATGGTTACTTCTGCACAAGTGAGCTCCTCCCAGAG
ATCTGGTGTGAAGGTTTCTGTACCGCTGACTTTCATCCGTCTGGGAAGCA
GCCAGGAGAGGAGACAACAGGACGAATCAGACAAACCTAACAGCAACGAT
GATGCAGGTGAAGTTGTGCCCAGTTCCTGCCCCATGGAAGATGACCTGGC
TGTTCCAGACTCTCAGATGTCACAGTCTCAGACCCATGTAATCATACATA
GACCTGACCCCATGAGAGATGATGCAGACCCCATTGAGGACGTAGACTCT
GATCAAGCACTCTACATCAAATCCAGGCTAAGAGCATCCGACAGCCCTGC
CCTGAGCACAGTGACCGAGCGTACAGAGAGCAGCCGTGCCAGCACCCACT
CCCCTCCTTCTGCCAAACAGAGGCCTTCCATCTCCATGGAGCCGATATCA
GAAGAACAAAATTTCCAGATGGTTACTTCTGCACAAGTGAGCTCCTCCCA
GAGATCTGGTGTGAAGGTTTCTGTACCGCTGACTTTCATCCGTCTGGGAA
GCAGCCAGGAGAGGAGACAACAGGACGAATCAGACAAACCTAACAGCAAC
GATGATGCAGGTGAAGTTGTGCCCAGTTCCTGCCCCATGGAAGATGACCT
GGCTGTTCCAGACTCTCAGATGTCACAGTCTCAGACCCATGTAATCATAC
ATAGACCTGACCCCATGAGAGATGATGCAGACCCCATTGAGGACGTAGAC
TCTGATCAAGCACTCTACATCAAATCCAGGCTAAGAGCATCCGACAGCCC
TGCCCTGAGCACAGTGACCGAGCGTACAGAGAGCAGCCGTGCCAGCACCC
ACTCCCCTCCTTCTGCCAAACAGAGGCCTTCCATCTCCATGGAGCCGATA
TCAGAAGAACAAAATTTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97240gene:BL97240Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97240_cuf2transcript:BL97240_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97240_cuf2-E1BL97240_cuf2-E1-1564476830-37481Branchiostoma lanceolatumexon
BL97240_cuf2-E2BL97240_cuf2-E2-1564476830-37483Branchiostoma lanceolatumexon
BL97240_cuf2-E3BL97240_cuf2-E3-1564476830-37485Branchiostoma lanceolatumexon
BL97240_cuf2-E4BL97240_cuf2-E4-1564476830-37487Branchiostoma lanceolatumexon
BL97240_cuf2-E5BL97240_cuf2-E5-1564476830-37489Branchiostoma lanceolatumexon
BL97240_cuf2-E6BL97240_cuf2-E6-1564476830-37492Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000002genomeSc0000002:6226937..6229200 +
Properties
Property NameValue
Transcript idBL97240_cuf2
Biotypeprotein_coding