transcript:BL97238_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97238_cuf0
Unique Nametranscript:BL97238_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97238_cuf0

>transcript:BL97238_cuf0-protein ID=transcript:BL97238_cuf0-protein|Name=transcript:BL97238_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=142bp
MPARNQVPPGEMLESLLFSGGSETSFFCRVESYLDNSEENGPQDCSKRLM
DRLHYLTKKELDAQNYPHVTHLLHLVQVIAGFTDFDDGLPVLLENKLPDM
IELVFKKAVSESLKIGRVSEPIQMSMEQVMDTITSIAEYSME
Run BLAST on NCBI

mRNA from alignment at Sc0000002:6213890..6217039+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97238_cuf0 ID=transcript:BL97238_cuf0|Name=transcript:BL97238_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3150bp|location=Sequence derived from alignment at Sc0000002:6213890..6217039+ (Branchiostoma lanceolatum)
GGGGCCTTGTCCCAGTCAAGGCTTCGTTCGTCCAGAGAAAAAGCAGACGA
AGATACGACAAAATTTAGAGACAGGCTTTCCGTGAATATTCAGGTTCACA
TTGCAGTGTTTAGTCGGTAACGGAGCTTCCAAACCTGATGTTAAGGTAAG
GAAGGTAACGTTATGTCATATTTTAACCTCCGAGTACTGGCAAGTATTCT
ATTTCTGCGACTTATGTGAAGAAAGGCAAACTTCGATCGACGGAGCTGTC
AAAAATTTGTCCAGAAGTAGTCAATAATTCATTACGTCGTTACTTTGTGA
TATTCAGGAGGTTCTGGCCAGTCTGCTCACTTAGACTTTCTTACAGGGTT
CACTGATTTGTGTTCAGTGTAGCTAATTTACATGGAATCGAGTTTTTCCC
GTTATAAATCTTGAAGCCACTCAAACGTCAAATTTTCGCGCCATTTCAAA
AATGACCGCCATGTTGTAGATTCGACCATTCTTCATGTGGGGGCGCGTAT
ATTTAAAAAATATTTTTATATTTCACAGATTAAATTCAACACGTAATCAA
ATGGTATATGTGTAATAAATGGTTTATATCTATGTAACATATATTGACAA
ATTATTGTTTGGGTGCACGGGTTATGCCAGTTATGTATTTTGTAATACTG
ACTTAGGCGCTGATTCGTCCACACGGAAGTGCGCTGCTCCAGTTCTGAGA
TTGTTGATCGTCCATTTTTGCGGTGTCGTCTGCAAGGTTGGTGAAATTAA
TGCTTCTGCACAGTTCCGTGTTGTGAAACATAATCAACGTAGCTGAAAAC
AAAAAGTGCAACACGTAGACAACAATCTGTATCGTTTTGATAGATTCCCC
ATGACCAGCCAACTGGCTAGTTCAGTTGTTGTAGTTGTGCCTTCATGATC
ACCAGATAATTCGTGATTTCTCCATTCTTTGTGGATGTAACGTTAACGTT
AAACTCATGGCTGCAAATAAAACTATCAAAAGCCAATTTCTTGAAAGGAA
ATATCTTGTGATAGTGAAGTATAACGGTAAGAAGTCATTGTTATTATGTT
AACTAACCAGCTACTTTAGCGCCCCTCTGTATTTTGTTGATCATTTATAT
CAATTTGTTGTTTTACAGCTGCGATTTTGAAACGTATTTCAACATCAATG
AATTTAACTTGAAGACACGATAATGCCTGCTCGGAACCAAGTACCGCCCG
GTGAAATGGCGAGTGGATATTTAATTATTCAATCCATGTTTTAATCCACT
GTTGTTTGATATCCTTGCTATCATATCGTAATAATGTGCTTATATTTTGA
TAAATCATTTTTCTTCCTAGCTTTCCAAACTATTTCATTCATTCTTTCTT
TCTTTCCTTCCATCCATCCATTCTTTCTTTCTAGGTAGTTGTGATTAATG
TACATACCATGATACTGGAGAAGTTCAATACAAAGCAGATTGTTATGCAG
TTGGTACATACATTTTTGTACATGCACCAAGATTGCATTGGTTGCAATGA
AAGTCAGCAAAGGGAGGATTTTTTATAATATTTTGTTTGTTTGCACTAAA
TACACTATTAGATGGTTACTGTCTCTACATGATTAGATTAGTTATTTGAA
ATTGTTAGATATTATAAATAGTTCAATTGATATGTATCTACAAGTTGCCA
TACATTACACCTGTTGTAATTGTTGCACAATAAAGTTCTTCTAAATTGCA
GCTGGAGTCCCTCCTGTTCAGTGGGGGGAGTGAAACATCCTTCTTCTGCA
GAGTAGAGTCATATCTGGACAATTCAGAGGAGAATGGACCTCAGGATTGC
TCAAAGAGACTGATGGACAGACTTCATTACTTAACCAAGAAGGTTTGTAC
AACACCATCTCAGCATCTGATACAAAATTAAAGCTAGCTATATGTATGTA
TTTATCATTAGATTAGATATCACGTCATCATCCCAGCTTTTACCAATGTT
ATTCAAAATGATCATAAGCATTATTGCAAAAATAACTTTTGTTGAAATGT
ATATTGTATACAAGAATAGTCTGAGAAGGCACCTGTAAGTTTTGTGCTAA
TATTGCAAGTCAGCTTTTTTGTACATGTACCTTTGCTGCAAGGTTATTAC
ATGTATGAATGTTGCAATATTCCGAAATATTAATATTTATGCTTTTGTTA
CAGGAACTTGATGCACAGAACTACCCGCATGTCACCCACCTTCTGCACCT
GGTGCAGGTCATAGCTGGGTTTACAGACTTTGATGATGGGCTGCCTGTTC
TGTTGGAAAACAAACTTCCTGACATGATAAGTCTCTTCATATTTCCTTTT
GTATGAGTGAGATGCGAAAAGCTCCACATTGTAGCTCTTTGGTTGAAGGC
ATAGTTTTATTCAAGGATCATTGATGCAATATCAGGAAATCCATTTAATG
TCATGATCTACGAGTTGGAGATATATCTATGTGCATATTGAACATGTTTA
TTGGCTATGTAGGTGAAACAGTATGACCACAAACATACTTGATTTTGAGT
AATTTTGAAAGAGTAGTAATAATCACCATAGTAATATGACTGCTTTTTCT
TTCATAAGAATTTGAATGATAGCCTACCTGTCATTTTATGAATTGAGACT
CTTAATCAACTTATAATTGGTAAAATAATTCCACTTGCAATTGATAGGAT
AACCTCAATTAGACTGTATATTTTAGACCCTTTTATTAAATTTGACATAT
GTGTTGTTATCAGCACATTGAACTGGTATTCAAGAAAGCTGTATCAGAGT
CACTGAAGATTGGGAGAGTCAGTGAGCCAATCCAGATGTCCATGGAGCAA
GTCATGGACACAATAACAGTAAGTTTCTTCTTATCAGATATAGATTGTTG
TGTGTTTTAATTAAAACCTCTCATACATTTCGCACCTTAATGACATTTAG
CTTGGTTTTAACCTTCTATTTCAGTAGGTGTACAGTACATGTGTTGTATC
CTAAAGGATTTACGCAGATATGAAACTTGGGTCTAGTCAATTTTGTAGGA
TGTTATTTCTGTTTTACATGTCTGAGCTGTGTAGAGAATCAAAAAATTGT
CCAACATTGTAACTTGAAAATTAGGCCTGTGCTCTGAACACATGAAATTA
ATAGTCATGTCCTTTGTCTTTCAGAGCATTGCTGAATACAGCATGGAAGG

Coding sequence (CDS) from alignment at Sc0000002:6213890..6217039+

>transcript:BL97238_cuf0 ID=transcript:BL97238_cuf0|Name=transcript:BL97238_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2130bp|location=Sequence derived from alignment at Sc0000002:6213890..6217039+ (Branchiostoma lanceolatum)
ATGCCTGCTCGGAACCAAGTACCGCCCGGTGAAATGCTGGAGTCCCTCCT
GTTCAGTGGGGGGAGTGAAACATCCTTCTTCTGCAGAGTAGAGTCATATC
TGGACAATTCAGAGGAGAATGGACCTCAGGATTGCTCAAAGAGACTGATG
GACAGACTTCATTACTTAACCAAGAAGGAACTTGATGCACAGAACTACCC
GCATGTCACCCACCTTCTGCACCTGGTGCAGGTCATAGCTGGGTTTACAG
ACTTTGATGATGGGCTGCCTGTTCTGTTGGAAAACAAACTTCCTGACATG
ATTGAACTGGTATTCAAGAAAGCTGTATCAGAGTCACTGAAGATTGGGAG
AGTCAGTGAGCCAATCCAGATGTCCATGGAGCAAGTCATGGACACAATAA
CAAGCATTGCTGAATACAGCATGGAAATGCCTGCTCGGAACCAAGTACCG
CCCGGTGAAATGCTGGAGTCCCTCCTGTTCAGTGGGGGGAGTGAAACATC
CTTCTTCTGCAGAGTAGAGTCATATCTGGACAATTCAGAGGAGAATGGAC
CTCAGGATTGCTCAAAGAGACTGATGGACAGACTTCATTACTTAACCAAG
AAGGAACTTGATGCACAGAACTACCCGCATGTCACCCACCTTCTGCACCT
GGTGCAGGTCATAGCTGGGTTTACAGACTTTGATGATGGGCTGCCTGTTC
TGTTGGAAAACAAACTTCCTGACATGATTGAACTGGTATTCAAGAAAGCT
GTATCAGAGTCACTGAAGATTGGGAGAGTCAGTGAGCCAATCCAGATGTC
CATGGAGCAAGTCATGGACACAATAACAAGCATTGCTGAATACAGCATGG
AAATGCCTGCTCGGAACCAAGTACCGCCCGGTGAAATGCTGGAGTCCCTC
CTGTTCAGTGGGGGGAGTGAAACATCCTTCTTCTGCAGAGTAGAGTCATA
TCTGGACAATTCAGAGGAGAATGGACCTCAGGATTGCTCAAAGAGACTGA
TGGACAGACTTCATTACTTAACCAAGAAGGAACTTGATGCACAGAACTAC
CCGCATGTCACCCACCTTCTGCACCTGGTGCAGGTCATAGCTGGGTTTAC
AGACTTTGATGATGGGCTGCCTGTTCTGTTGGAAAACAAACTTCCTGACA
TGATTGAACTGGTATTCAAGAAAGCTGTATCAGAGTCACTGAAGATTGGG
AGAGTCAGTGAGCCAATCCAGATGTCCATGGAGCAAGTCATGGACACAAT
AACAAGCATTGCTGAATACAGCATGGAAATGCCTGCTCGGAACCAAGTAC
CGCCCGGTGAAATGCTGGAGTCCCTCCTGTTCAGTGGGGGGAGTGAAACA
TCCTTCTTCTGCAGAGTAGAGTCATATCTGGACAATTCAGAGGAGAATGG
ACCTCAGGATTGCTCAAAGAGACTGATGGACAGACTTCATTACTTAACCA
AGAAGGAACTTGATGCACAGAACTACCCGCATGTCACCCACCTTCTGCAC
CTGGTGCAGGTCATAGCTGGGTTTACAGACTTTGATGATGGGCTGCCTGT
TCTGTTGGAAAACAAACTTCCTGACATGATTGAACTGGTATTCAAGAAAG
CTGTATCAGAGTCACTGAAGATTGGGAGAGTCAGTGAGCCAATCCAGATG
TCCATGGAGCAAGTCATGGACACAATAACAAGCATTGCTGAATACAGCAT
GGAAATGCCTGCTCGGAACCAAGTACCGCCCGGTGAAATGCTGGAGTCCC
TCCTGTTCAGTGGGGGGAGTGAAACATCCTTCTTCTGCAGAGTAGAGTCA
TATCTGGACAATTCAGAGGAGAATGGACCTCAGGATTGCTCAAAGAGACT
GATGGACAGACTTCATTACTTAACCAAGAAGGAACTTGATGCACAGAACT
ACCCGCATGTCACCCACCTTCTGCACCTGGTGCAGGTCATAGCTGGGTTT
ACAGACTTTGATGATGGGCTGCCTGTTCTGTTGGAAAACAAACTTCCTGA
CATGATTGAACTGGTATTCAAGAAAGCTGTATCAGAGTCACTGAAGATTG
GGAGAGTCAGTGAGCCAATCCAGATGTCCATGGAGCAAGTCATGGACACA
ATAACAAGCATTGCTGAATACAGCATGGAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97238gene:BL97238Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97238_cuf0transcript:BL97238_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97238_cuf0-E1BL97238_cuf0-E1-1564476830-37437Branchiostoma lanceolatumexon
BL97238_cuf0-E2BL97238_cuf0-E2-1564476830-37439Branchiostoma lanceolatumexon
BL97238_cuf0-E3BL97238_cuf0-E3-1564476830-37442Branchiostoma lanceolatumexon
BL97238_cuf0-E4BL97238_cuf0-E4-1564476830-37444Branchiostoma lanceolatumexon
BL97238_cuf0-E5BL97238_cuf0-E5-1564476830-37446Branchiostoma lanceolatumexon
BL97238_cuf0-E6BL97238_cuf0-E6-1564476830-37448Branchiostoma lanceolatumexon
BL97238_cuf0-E7BL97238_cuf0-E7-1564476830-37451Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000002genomeSc0000002:6213890..6217039 +
Properties
Property NameValue
Transcript idBL97238_cuf0
Biotypeprotein_coding