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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97237_cuf3 >transcript:BL97237_cuf3-protein ID=transcript:BL97237_cuf3-protein|Name=transcript:BL97237_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=160bp
LQCNWSIVVESSKSIVLTFQDFNVEYEENCGYDNVTVYDGTPERGQLKGK
YCGDAERDRRHYPVTPIVSKLHVMTVVFLSDTWIRARGFLATYTSHQKYV
RCEGWEFRCTDEPQCVPLTKRCDGQDDCSDRSDEGNCECREIPDKLGFCK
GVISYDRMVL Run BLAST on NCBI mRNA from alignment at Sc0000002:1413565..1419696- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97237_cuf3 ID=transcript:BL97237_cuf3|Name=transcript:BL97237_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=6132bp|location=Sequence derived from alignment at Sc0000002:1413565..1419696- (Branchiostoma lanceolatum)
CTGCAGTGTAACTGGTCCATCGTGGTGGAATCGTCCAAATCTATCGTTCT
CACCTTCCAAGACTTCAATGTGGAGTACGAGGAGAATTGTGGGTATGACA
ACGTCACGGTGTACGATGGGACCCCGGAGCGAGGTCAACTAAAAGGTAAA
GCCCCCCTCTCACTGGAACTGCGGCACGCTGGCGGCGTCGCTGCGTCCTA
AACTGGATTTGTGTTACCCTTTACTTTATAATGGGAATATTATTCAAAAG
GTACAAGTATGACCAAAGAGACATCAAATTTAAAACACACAAAGCTTAAA
AAGATTCGTTTTTTGTCGATGAAATTCGTTGAGTGCTTTGTCAATTTGAT
CGGCCGTAGCAACGCCGCCAGCGTGCCGCGGGTCCAGTGAGAGGGGGGCT
TAACAAAATACCCATAAAATACATACTGATCCTTGTTGGTTTCTCACAGC
TGAAGTAACGGCATGTGGCGGGATCCTCACAGACCCAACAGGGACCTTCA
GCACCCCAAACTACCCAGCTGACTACGACAACAACCTCCACTGTAACTGG
ACTATCCAGGCCAACACCTCCGTAACTCTAACCTTCATGGACTTCGATGT
CTACTTCGACCGCGGCTGCAGCGGGGACCACGTTGACGTGTTTGAGGGTG
ATGAGAATGGCAGACGCATAGGTGAGAGTGATACTTCATAAAAAACATTC
CTATGAACAGTGTTGTTATTGTTCGCCTTGTAGTGCCAAGTGGCACATAG
GTCAGCGAGTTTCCTTGCTGTTTCAGTATATTTTTACAGGGAGGAGTTGC
TAGACCTTCCCCTTTAACGTGCTTGAGGCACGTATTCAAACATGACACAC
CATTTTACGTCCTTTCCGAAAGACGGGGGCAGCCCCAACCGAGATATCCA
ATCCCAGGCTTTGAACCAAGGCGCATACGCACTCTCCAAGCAGAGGTTGG
TGGGAGAAGATCTTGACCTTTTTATCACATGCCCCGTTTTTTTCCATGCA
TGGATGGGGGAACGGACATAAAACGGGGCATATGATAAAAAGGTCAAGAT
TTTCTCCCACCAGCCTCTGCTTGGAGAGTACCCAGAAGCTTAACTGTGAG
GTTGAGTTGAGTTACAAAGAAACCCTCTTTAAACATTACTTCACCAAAAC
TCTAATCAATTTTTTATCAATTTGATATTGGTTACTTACTTTCTCATTTA
CGTTTTTGTTTATTTGTTTGTTTGTCTGCTTAGGTCGGTACTGTGGTGAC
ATTACTGTGAGAGACCACTATCCTGTAAGAAAAGTCGTGTCAAATAGCAA
CACAACAACAGTGGTGTTTACCAGTGACGCGTGGTCGGCTGGGCGGGGCT
TCAAAGCGTCATATGCCACCTTTGACCCCAACCTCCAACAAGGTCATTGT
ACAATTACTATAGATGTTCTCATACTAGCGGCATTCACGTTTGTAACTTC
TCATCAGAAAGATATTAAGTCGTTTTACTTAAGATAGTAAACTTGACATT
GTATGAGGTAGTATGATGTTGCAATAAATGAGCTTTCATGTTAATGTAAT
ATGATTTTGTTGACGTTGAAAATATTTTCCTCTCGTTGCAACTTGACTAC
ATAAATTTACATAAACTGTGTTACCATTTAGCTCTAAGGCCCCTTTTTTA
CATTAGACAGCGATCTCTCCATGACCCAAAACTGGATTTGTGTAACGTTG
GAAAAGTATGAGTTTTAAAAAATATTTTATAAAACACAGATCATGTCATT
TTCTATCAATGAGCGACCTGTCGAATCTTTGGTCGTCAAGTGGTCGCTCA
TCGTTCGCAACCTCTGTGTGGCAAAGAAGGCATTTATGATGATGATGATT
GATAACTGTTATTGCAGATGAGAACGTGACCTGTGGCCGTGCGCTGACCG
GGTCATCCGGCAACTTCACCTCACCAAACTACCCGGACAGCTACGGAGAC
ATGGCCGACTGTATCTGGACCATCACAGTCAACGACACTCGATCCGTGTC
CTTGACCTTCGACTTCTTTGACCTTGAAAAGGAGCCAGACTGTAGCTTTG
ACGCGGTAGAAGTCTACCAGGGAACTCCAGAGGCTGGACGTGAACTTGGT
AAACTTGAGTGTACCGTTGTAACAAATGACAAGATGAATATACTAGTAAT
GATAAACACTATTGCTAACCAAATCTGTTTGTCAAGCGGCAGTATCTTTC
GCTATTTCTCAACAGCAAGCTAGTAAGTCGCTGTATATAAAAACTTAAAA
CATGATACTCATGTGATATGACTTTGCTGACGTTAGAAATCATTTCTTTA
AATCACTATAGCTGTGGATGCAGCAACAACTGCACTTTATTGAACAGTTT
GGGGGAACAGAATTCAGATGCAATGCGATACTGACCCCATTCATATTTTG
TATTCGTACCAAAATCCATATTATTTGACAATGATTGAGATGTATATCAT
AACTCAGGTACGTTTTGCGGCAACTCCACCACCGATGAAAAGTATCCCAG
GGGTCAGATCAGGTCCAACCTTCACGTGATGACGCTGACCTTTCGCAGTG
ACCTGTCCATGACTCGACCAGGATTCCATGTTACTTACGTCAGCGATGAA
AGAACAGGTATGTACAGAGAGTCTCTCTGTCTTCCTCTGTCTTCCTCTGC
CTCCCTCTGTTTCTCTATCTGTCTCTCTGTCTTTCTCTGTGTCTGTCTCT
CTGTCTGTCTTGTTTGTGTGTGTGTCTGTGTCTCTGCGTGTATGTGTTTC
TGCGGAAAGTGTTCAGCACTAAGGACAGGTATGTGTGTGTCTGTGTGTCT
GCGGAAAGTGTTCAACGCCAAGGAAAGGCATGTGTGTGTCCGTGTGTCTG
TGTGTCTGTGTGTCTGTGGAAAGTTTTCAGCACCAAGGACAAGTATGTGT
GTGTCTGTGTGTCTGCGGAAAGTGTTCAGCACCAAGGACAGGCAAGTGTG
TGTGTCTGTGTGTCCGTGTGTCTGTGTGTCTGCGGAAAGTTTTCAGCACC
AAGGACAGGTATGTGTGTGTCAGTGTGCCTGTGTCTGCGTATGTGCATGT
GCGTGCGTGCTCGTGTGTCTCTTTATAGCTTTCCTTTCTAAACTTCCAGA
TATGGTGTACTCCAAAACTATCTAGTCACTCGTTTCTCTGTTTTTGTGCG
CGTGCCTAACAGACGTGGCATGTATAGAAGATGAGTTCCGGTGCGCCGAT
GGTTCTGACTGTGTTCCCCTGTCATGGAGATGCGACGGCACCAAAGATTG
CTGGGACGGGACGGATGAAACTAAATGTGGTAAGTTTTCCTTCATTCATT
TCATACATCTGCCATTCAACTAGTTCTGCATACTGTAAATGCAGAAATTT
TCACGGTGGTTTTATGTTCGCGGTTATCGACGTTTTATTGCGAACTTAAA
ACCGCAGCAAAATTTTTGTCCAATACTGTATCAGTATGTGACTATAGCGC
TGCCGCAAACGTAAAACCACCGCGAACACTCCATTTCCGCCTTAGCGCGA
AATAAAAACCAGGCGAATTTAGATGCATTTACAGTAACCGGTGAACATCC
TGTCGGCGTAACAAAAATTGTACAGTAGGTACGCTTTTCGATAAGAGAGG
TTGGATCCCGGTGCTCAATGTGCGGCCCTCCACAAACACAGGACATCCGA
CTTTACGTCCCGTTCAAGAGGACGTCCCTAACCGAAGCTAGGTTCTCATT
TTTACCTGAGCCTAGAAATGAAATAGGCGTAGAGTCGTGTGAGGCAGTAC
TAGTATGTGTAAAATGCCGTTCACAAGGATACAACATTGTGGATTTGCAT
CTACATGTACTAGACATGAATACTAAAATTATTTCCTTTGCACAGATGAG
TTCTCAACATGTGGGTTAAAGTTCACGAAGGCCAGTGGACGCATTATGAC
GCCCTCCTTCCCTAAGAAGTACAGTAACAGCCTGCAGTGTAACTGGTCCA
TCGTGGTGGAATCGTCCAAATCTATCGTTCTCACCTTCCAAGACTTCAAT
GTGGAGTACGAGGAGAATTGTGGGTATGACAACGTCACGGTGTACGATGG
GACCCCGGAGCGAGGTCAACTAAAAGGTAAAGCCCCCCTCTCACTGGATC
CGCGGCACGCTGGCGGCGTCGCTGCGTCCTAAACTGGATTTGTGTTACCC
TTGTCTTTATAATGGGAATATCATTCAAAACGTACAAGTATGACCAAAAA
GAAAACAAAACACACGAAGCTTAAAAAGATTTTTTGTCGATGAAATTCGT
TGAGTGCTTTGTCGATTCGATCGACCGCAGCGACGCCGCCAGCGTGCCGC
GGGTCCAGTGGGAGGGGGGCTAAAGTGGCGGAAAGAATACAAGTTGCAAT
TGCATGTAACTTCAGTCTACTGCCACTTTTTCTTGTCCCTTTTATAGGGT
TTTTAAGACATATCAAAGGGACAAGAATTAGAAAAAAAAAGAAGTATTGT
GAATAAAAAAAATCGTTCCCGCAGGAAAATACTGCGGGGACGCTGAACGG
GACCGTCGGCACTACCCCGTGACTCCCATCGTGTCCAAGTTGCACGTGAT
GACGGTGGTGTTCCTCAGCGACACGTGGATCAGGGCACGGGGATTCCTGG
CAACCTACACCAGCCATCAGAAATGTATGTTCCATGCGGTTACATATTTT
GCACCCTCCCGAGCAGGCCCGATAAGCTCGGTACGTTACCTCCCATACCG
GCCCTGCCATTTGAAGCCTGTAAAATCGCTTCTGGCAACGTCACCGACAC
TCGCTCATGAAAAATTAATGAGCTACCCTTATTTGGCACAAACAGCCGTT
ATTTTGTCCTGAACCCAAAGTAACAATGTAATGCGTAGCCTGATTGGTTG
ATAGCTTCCCAGTGTCCTTTGTGGTTTGCTCCAGATGAGCTTTTGCAAAC
CCTCTGATTGGCTGAAACTGTTTTGGTGGTGACGTCGACAGAAGCGATTT
TACAGGCTTAAAATCAGGCAGGGCCGGTATGGGAGGTAACGTACCGAGCA
TATTGGGCCTGCTCGGGAGGGTGATATTTTGTAATAAAACCATTTCAAAT
GTTACTAGTCTATCTAGAGAAATAACATTCAAATGTAGCGACAAAACTTG
TACCATGTAGCGAAAGAACTTGTACCATGTAGCGAAACATCTTTTGCCAT
GTAGCCAAATGATTGTGGCTAACTGCCATGTAGTGAAACAATCGGTTACC
CTACATAACATAGATGGAGCGTTGTTTCTTGTGTTATCAATTTTGAAAAA
GCGTAAGAGACAACACCTGTTGAATGTAATGCGAGGGCCACATTGCCAAA
CCAGCGTCCAGCCTGGTAGCGGAAACGAAAAGTGGACGAAAAGTATAATA
TAAAAGACAACAAAACACACAAAAATATAGTCATTAGCATAATTTGCGTA
CATCTCTTGATATATATTCTTTTTTCGTTCCCGCAAATAGCCCGACCGGG
CCTCGGTAAAAATGTGACCCTGGCATAACTAGCTAAATATCTTCAGTGCC
AATGCGGAATATAGCTGTCACTCTTCATCTATTTGCAAGCAACACAGATA
GTCCTGTACTAATCCGTTTATCCTAACTTCAGATGTCCGGTGTGAGGGCT
GGGAGTTCCGCTGCACAGACGAGCCGCAGTGTGTACCCCTCACCAAACGC
TGTGACGGACAAGATGACTGTAGCGACCGCAGTGATGAAGGCAACTGTGG
TAAGACTCGTGGGTGCCTTTTATGACCACTTGTTTCATTTTGATAGGTTA
TGATACGTAGGGTAGCAGACTTAACATATGTTTCACCTTTGTGTGGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGGTTGCGCTCGTGCGTGGTTGCGTGCGTGCGTGTGCCTTTGACTTTG
TGTCTCTGGACAGCATTACTTCATGTTATATGGTAGGTAGGCAGGTAGGG
ATAGGAAAAACGAAAGTCAAGTTCGATAATGGGCTTCCTGGTTATTTTAT
AGGTTTTGATATGTGTTGTGGGTTAGCAGACATTACAGATGCCAGGTGTC
TCTTGTTTACAGAGTGTCGGGAGATACCTGACAAACTGGGCTTCTGCAAA
GGTGTGATATCGTACGACAGAATGGTGCTACC Coding sequence (CDS) from alignment at Sc0000002:1413565..1419696- >transcript:BL97237_cuf3 ID=transcript:BL97237_cuf3|Name=transcript:BL97237_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1920bp|location=Sequence derived from alignment at Sc0000002:1413565..1419696- (Branchiostoma lanceolatum)
CTGCAGTGTAACTGGTCCATCGTGGTGGAATCGTCCAAATCTATCGTTCT
CACCTTCCAAGACTTCAATGTGGAGTACGAGGAGAATTGTGGGTATGACA
ACGTCACGGTGTACGATGGGACCCCGGAGCGAGGTCAACTAAAAGGAAAA
TACTGCGGGGACGCTGAACGGGACCGTCGGCACTACCCCGTGACTCCCAT
CGTGTCCAAGTTGCACGTGATGACGGTGGTGTTCCTCAGCGACACGTGGA
TCAGGGCACGGGGATTCCTGGCAACCTACACCAGCCATCAGAAATATGTC
CGGTGTGAGGGCTGGGAGTTCCGCTGCACAGACGAGCCGCAGTGTGTACC
CCTCACCAAACGCTGTGACGGACAAGATGACTGTAGCGACCGCAGTGATG
AAGGCAACTGTGAGTGTCGGGAGATACCTGACAAACTGGGCTTCTGCAAA
GGTGTGATATCGTACGACAGAATGGTGCTACTGCAGTGTAACTGGTCCAT
CGTGGTGGAATCGTCCAAATCTATCGTTCTCACCTTCCAAGACTTCAATG
TGGAGTACGAGGAGAATTGTGGGTATGACAACGTCACGGTGTACGATGGG
ACCCCGGAGCGAGGTCAACTAAAAGGAAAATACTGCGGGGACGCTGAACG
GGACCGTCGGCACTACCCCGTGACTCCCATCGTGTCCAAGTTGCACGTGA
TGACGGTGGTGTTCCTCAGCGACACGTGGATCAGGGCACGGGGATTCCTG
GCAACCTACACCAGCCATCAGAAATATGTCCGGTGTGAGGGCTGGGAGTT
CCGCTGCACAGACGAGCCGCAGTGTGTACCCCTCACCAAACGCTGTGACG
GACAAGATGACTGTAGCGACCGCAGTGATGAAGGCAACTGTGAGTGTCGG
GAGATACCTGACAAACTGGGCTTCTGCAAAGGTGTGATATCGTACGACAG
AATGGTGCTACTGCAGTGTAACTGGTCCATCGTGGTGGAATCGTCCAAAT
CTATCGTTCTCACCTTCCAAGACTTCAATGTGGAGTACGAGGAGAATTGT
GGGTATGACAACGTCACGGTGTACGATGGGACCCCGGAGCGAGGTCAACT
AAAAGGAAAATACTGCGGGGACGCTGAACGGGACCGTCGGCACTACCCCG
TGACTCCCATCGTGTCCAAGTTGCACGTGATGACGGTGGTGTTCCTCAGC
GACACGTGGATCAGGGCACGGGGATTCCTGGCAACCTACACCAGCCATCA
GAAATATGTCCGGTGTGAGGGCTGGGAGTTCCGCTGCACAGACGAGCCGC
AGTGTGTACCCCTCACCAAACGCTGTGACGGACAAGATGACTGTAGCGAC
CGCAGTGATGAAGGCAACTGTGAGTGTCGGGAGATACCTGACAAACTGGG
CTTCTGCAAAGGTGTGATATCGTACGACAGAATGGTGCTACTGCAGTGTA
ACTGGTCCATCGTGGTGGAATCGTCCAAATCTATCGTTCTCACCTTCCAA
GACTTCAATGTGGAGTACGAGGAGAATTGTGGGTATGACAACGTCACGGT
GTACGATGGGACCCCGGAGCGAGGTCAACTAAAAGGAAAATACTGCGGGG
ACGCTGAACGGGACCGTCGGCACTACCCCGTGACTCCCATCGTGTCCAAG
TTGCACGTGATGACGGTGGTGTTCCTCAGCGACACGTGGATCAGGGCACG
GGGATTCCTGGCAACCTACACCAGCCATCAGAAATATGTCCGGTGTGAGG
GCTGGGAGTTCCGCTGCACAGACGAGCCGCAGTGTGTACCCCTCACCAAA
CGCTGTGACGGACAAGATGACTGTAGCGACCGCAGTGATGAAGGCAACTG
TGAGTGTCGGGAGATACCTGACAAACTGGGCTTCTGCAAAGGTGTGATAT
CGTACGACAGAATGGTGCTA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000002 | genome | Sc0000002:1413565..1419696 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97237_cuf3 |
| Biotype | protein_coding |
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