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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97232_cuf3 >transcript:BL97232_cuf3-protein ID=transcript:BL97232_cuf3-protein|Name=transcript:BL97232_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=288bp
MKASMWVQGHRKRPRLSSVLHHKCLLPFLSGTIFGIALSTIFILLLISLL
AGNDGQNADITDSGISGELTVRQPLYVGVMTAGKFLHTRATACNNTWGRQ
VSKVEFFSQHGSWEDNHLPIISLPGVSDDVYPPQGKAFRMLQYVCQNHGQ
SYDWFMRADDDSYINVERLRKFLGKIDSSKKVYMGQPGYGFPAVRHKLGL
NGRNFCMGGPGVIFSRAAIQALCPHLDTCMEEVMSTEEDVEIGRCVTNHL
HIQCTRAWELTELFYHAYEEEFSEDRPFTGNLQKNRHL Run BLAST on NCBI mRNA from alignment at Sc0000002:7886808..7891915+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97232_cuf3 ID=transcript:BL97232_cuf3|Name=transcript:BL97232_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=5108bp|location=Sequence derived from alignment at Sc0000002:7886808..7891915+ (Branchiostoma lanceolatum)
GTTTGTCTGCGGCGACCATGCATGAGTTAAAATGAGCGATGAAGGCATCC
ATGTGGGTTCAAGGACACAGAAAACGACCCAGGCTGTCCAGTGTTCTCCA
CCACAAGTGCCTGTTACCATTCCTGTCAGGCACCATATTTGGCATAGCGC
TGTCAACCATATTTATTCTTCTCCTCATCTCCCTCCTGGCTGGGAATGAT
GGGCAGAATGCAGACATCACTGACTCAGGTATGCTATGGTCTTGTGATCT
TGTGGTAAGGGGTGTTGACAAAGAATCATGCTAAAAGTTCTGGGTTGGAA
TCCCTGGCAGACCTCAATCTTGTGCCCTTGGGAAAGGCATGTTACACCTA
TTTCCTCACATGTGATGAACATGACTACAGAGCTTTGGTTAGGAATGTCC
ACTTGGATTGAATGTTAAGCTAAAGGTCCCGTGTTTGAGGAAAGCCACAC
CTCAAGCACATTAACCATCCCACCACACTTATCAAAAAGAGTAGGGGTCC
ATCCTAGTGTAAGTGGATCATTTTTTACAGTTTGATCTCATGTAGCTTGA
AGCTACTGTCCTTGGTGCTGAAGAACAACATCACTTCACTTGTCTTTTGT
TGTGAAAAATTTCGCATTGCTGTGTAAAACAGGCGTTTTATGCCTCAAGG
CATGCTGTGCACCAGTTATGAAAGGAAACATAAAGTTAGTGGAGTAGGAT
TACAAAAGTATACAGTAAATACTTCTAATGTATTGAAGTGAATAACAGCC
CACTGCACCTAGGGCCTCAAAAATGGCAATGGGAACCTTTACCTTTATTA
TGGTTTCATTTGCTGTTGGAGGCATAGTACAACTGTGATACATATGTTAT
ATATTGATGTTGTCTGTCTGCATATGCATATTACATTGTGATATCTTTGT
TCTATGATGTTGCAGGGATTTCAGGTGAGCTGACGGTACGACAGCCCCTG
TATGTTGGGGTGATGACTGCTGGGAAGTTTCTCCACACCAGGGCAACGGC
ATGCAATAATACATGGGGACGGCAAGTCTCAAAGGTATGTACTGTATGTA
ATCATTAATCTTCAAGTGACATTTTCTCATATATGTCTTTCCTATATAAC
GATTCTGCTACCTTTTATTAATTACTGATCGAGGAAGAATTGTGGTTGAC
TGAGGAAATATAGTGGGGGCTATCTAAAATGTTTTATCATGTACAAAATC
TATCCTTATGCATTGTATATCTTGTTATCTGAATATCTAATCTTCCATGT
AGAATCTTTGTGACAAAAAGATGTTATAAACATTTTATACACTCAGGTGG
AATCTTTCTCCCAACATGGCAGCTGGAAAGACAACCATCTACCAAGGACA
TTATAATGTCCTTGCATCTACCAATCATCTATCTCCCTAGGGTATCACTA
ACCGCAGGCCTGACCTGAACCCTGCAATAGGGGTGTCTTGAGGTAGGGCT
GTCTTGGTTTAACAACCAATCTAGACAAACATTTGTCCCTACTGTACAGG
TGGAGTTTTTCTCCCAACACGGCAGCTGGGAAGACAACCATCTACCCATC
ATCTCACTCCCAGGGGTGTCGGATGATGTGTACCCCCCACAGGGCAAGGC
CTTCCGGATGCTGCAATACGTGTGTCAGAACCACGGGCAGAGCTACGATT
GGTTCATGCGAGCAGACGATGACTCGTACATCAACGTGGAGAGGCTGCGC
AAATTCCTGGGGAAGATAGACAGTAGCAAGAAGGTAAATAACTTACCATA
AAATGACTATTCTCACACTGCACCAAGAACTGTAGGTGCATCCTCACCAG
ATAGCTTGAATCTTCAGCATGCTATTGAGGTAGCAGTTTAACACCAAATT
TGCATTGGTTAGGCAGCAGGGAAAGGGTTAAACAACATTTGCAGTTAGAT
ACACATGTACAGATACACTGATGTATGAATGAATCCTAACAATTCTATGG
TTTTAGAAGAAAGGATTCTTTTGGCTGCCAATCACTCTTAATTAAGTATT
AATGTATTGACATTAAACCAGTGGACATTTTGCCCTTGTAAGATTTTTAA
AAAGATTTTCATTACAAAAATACGCGAAATGCTCTAGGTGATATTAGGCT
GATTTCATCAATTCATTAGAATTCACTACAAAAGGCAGGCTGTCAATGTA
GATATTAACAGTGAAAAACTTCCTTGGCTAAGTTACAACCACCATCCCGA
AGGAGAACAACACAGCTCTCTTACTATGACTTAGCTTTTTGACAAGATTT
GAAATATGAGGTAACAAAAACAGCTAAGAAACTCAAGTAGCAAACAGTCG
TCAGAACAGGTACATGCTTTCTTGCCTTCATTTGTTTGTTCTGAAATTAG
TTTCATACTTCAAAGACTTTAACTCAACAGTGACAAAAGCTGTTATAACA
CTGTTTTTAACTGGGTCCCGCAAGTCTTTGACTCTGGCGACCAAGACATG
TCCACCTGTTTAAGTTCCCAAGCCTTTTCACCCTTAAGTGGGAGGAATGG
CAACTTCAGACTGAGCCATAACAAAGAGGAAAGTGTACGATTACCGAGAA
GTGGATACGGTAGAGTGGGTTCCAATTAGCACAGGTATCAGTGGGTGTTC
TGTTTTTGTTGGGTTGTGGTTCATTGAAGAGGTGGTGCTCACCGCCTTTC
TTACATAATACTCCAAAACTTGTGGGACACAATGGACTGAAATGGTTCAA
GTCAATGGAATGTTGTATTCGTGTACACTGCAGTCTTTTATTCACAGAAT
AGGAAATTTAACTACAATCACATCTAATCTAAAAGAAATTAACAACCTAA
GAGTGTGGAATTACCACAGTGATATCAAAACATGGCAAAAGCATATTATC
TACATGCACTGCAGACAGTTGTGTAAAAATAAAGTTGCTTTTGTAGCCCC
TTTAATGTTTCTGGCTTGGGTTGTAGCAAGTGAATTTGATCCTGTGTCAA
CAATTCAGGCTAATCCACCAACCTCAATGTAATGACACATTTTAATACAG
CAATATTTTCACTGAATTTTCACTGAATGTGATTTGAAAGAAACATCACC
CTGCCAGTTCTGAATGTTGGAAGGTTGGCTGCAAGAGCTAACCTGTGGAT
AATGCCCTTAGTAGTATTTTGCAACACTCAAAATCAGGCCCTCTGTTTCC
CTGTTTGGACAGGTGAGGTGCTAATTGTTTACCAAGGCCATTTTACATAA
CAAACCCCTGTAGAGCATCAAAGGTACATTCAGAAATATGACTTGTGTTT
CCAGCATGCTGTTTGTAAGTAACTGGATAACAACAAAGTACTTTGCACAC
AACCACATGTTTTCTTCTAGCCAACATTTCAGTCTGTGACCTTTCTCGGG
GCAATACTCAGTATACTTACCTATAGTAAGACAGAGTTGTGTACAAAGAA
TTTGTTATCCATTGATTTTGAGGTGATGAAAAATTAAAAAATGGTTGGAT
GCAAGTATTCAGAAAGTTTAGTATTTGGCTAACAAAAAATGGTATTATCA
GTGACAATGATCATACACAGATTGAATCAATGAAAAGGCCTTTCATGTGT
TATATGTTGACAAGACCTGTACAATGTTACACAAACATCAAAGGAGGTTA
CAGACAGGTATGTTCTGTCCCCTGCCTGCCCAGGTGTACATGGGACAGCC
CGGCTACGGCTTCCCTGCAGTGCGGCACAAGCTGGGGCTGAACGGGAGGA
ACTTCTGTATGGGAGGGCCTGGGGTCATCTTCAGCAGAGCTGCAATACAG
GGTGAGTAACTTCTGCATGGGAGGGCCTGGAGTCATCTTCAGCAGGGCTG
CAATACAGGGTGAGTAACTTCTGCATGGGAGGGCCTGGAGTCATCTTCAG
CAGAGCTGCAATACAGGGTGAGTAACTTCTGCATGGGAGGGCCTGGAGTC
ATCTTCAGTAGAGCTGCAATACAGGGTGAGTAACTTCTGTATGGGAGGAC
CTGGAGTCATCTTCAGTAGAGCTGCAATACAGGGTATTTCCACCAGATAC
CATAAGACCACCACATTCAAGAAACCTATGTTTTGCTCGTATTGCATACC
TGGTAAACCGTCTCATGGTGTAACACACCAACTTTGTACTAAATAGTACA
AGCCGCATATCTTGACAGATTTATGTTATACACTTACTCCGGGAAAGACC
CCTACTCTTTTCAATAATTGTGGTGAGTTCTTTTACGTGCTAAAGGTGTG
ACTCTCCTCAAACACGGGACCTCCATTTAACGTCCTATCCTAGGGATATC
CCTAACCAAAGCTTGGTACTCATCTATACCCGAGTGAAGTGAGGAAAGCC
TTGTAAATGCCTTTCCCAAGTGGACAATGTCAACAGGACAAATCAGCGTC
AACAACTGAAATTCCCACCTTTGGCAAAATCGTTTCCTATGGCTGCACTC
CCGTTCCCCTATTTAAAAACAACAACTGTTAAACCAAGAAGGTTATAACT
TATATACCAATCCCCTTCCTGTGCAGCCCTTTGTCCCCACCTGGACACCT
GTATGGAGGAGGTGATGTCTACAGAGGAGGATGTGGAGATCGGCCGCTGT
GTCACCAACCATCTGCACATACAGTGTACACGGGCATGGGAGGTATGGGA
GAAATATTAGTGACATTCTCAGGAATTATCAAGATGCATCAGGCTTTGTT
ATTAAATAGTAATATGCCAGTAGCAACTTGTACATTCATTGTGACTTATC
AAACTTTAAGGTTGTCTTTTGACCCAGACTTAGACATAAGAAGTAAAACT
CACTCACTCACTAACTCATTAAACCCCCTTGCTCTTGGTGCATAGTGACA
TCCCTAGTAACCAGCTACTAAACAATAAAATCCACATGCATGGCAACCTG
GATTTATAACTATCTTTGCAACATGGCATGGCACAAAGGAGGAAATGTGT
TTTTTCTTACTGTTAAGTGTTTGTTTGACTACACACACACACACACACAC
ACACACATCCTTCTCATAACAACAAAAGTGCATAGAATTTTGGAATGATC
AGTTCTTTCTCACTTTTCAGTTGACTGAGCTGTTCTACCATGCCTATGAG
GAAGAGTTCAGCGAGGACAGGCCATTCACAGGAAACTTGCAGAAAAACAG
GCACCTGG Coding sequence (CDS) from alignment at Sc0000002:7886808..7891915+ >transcript:BL97232_cuf3 ID=transcript:BL97232_cuf3|Name=transcript:BL97232_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=5184bp|location=Sequence derived from alignment at Sc0000002:7886808..7891915+ (Branchiostoma lanceolatum)
ATGAAGGCATCCATGTGGGTTCAAGGACACAGAAAACGACCCAGGCTGTC
CAGTGTTCTCCACCACAAGTGCCTGTTACCATTCCTGTCAGGCACCATAT
TTGGCATAGCGCTGTCAACCATATTTATTCTTCTCCTCATCTCCCTCCTG
GCTGGGAATGATGGGCAGAATGCAGACATCACTGACTCAGGGATTTCAGG
TGAGCTGACGGTACGACAGCCCCTGTATGTTGGGGTGATGACTGCTGGGA
AGTTTCTCCACACCAGGGCAACGGCATGCAATAATACATGGGGACGGCAA
GTCTCAAAGGTGGAGTTTTTCTCCCAACACGGCAGCTGGGAAGACAACCA
TCTACCCATCATCTCACTCCCAGGGGTGTCGGATGATGTGTACCCCCCAC
AGGGCAAGGCCTTCCGGATGCTGCAATACGTGTGTCAGAACCACGGGCAG
AGCTACGATTGGTTCATGCGAGCAGACGATGACTCGTACATCAACGTGGA
GAGGCTGCGCAAATTCCTGGGGAAGATAGACAGTAGCAAGAAGGTGTACA
TGGGACAGCCCGGCTACGGCTTCCCTGCAGTGCGGCACAAGCTGGGGCTG
AACGGGAGGAACTTCTGTATGGGAGGGCCTGGGGTCATCTTCAGCAGAGC
TGCAATACAGGCCCTTTGTCCCCACCTGGACACCTGTATGGAGGAGGTGA
TGTCTACAGAGGAGGATGTGGAGATCGGCCGCTGTGTCACCAACCATCTG
CACATACAGTGTACACGGGCATGGGAGTTGACTGAGCTGTTCTACCATGC
CTATGAGGAAGAGTTCAGCGAGGACAGGCCATTCACAGGAAACTTGCAGA
AAAACAGGCACCTGATGAAGGCATCCATGTGGGTTCAAGGACACAGAAAA
CGACCCAGGCTGTCCAGTGTTCTCCACCACAAGTGCCTGTTACCATTCCT
GTCAGGCACCATATTTGGCATAGCGCTGTCAACCATATTTATTCTTCTCC
TCATCTCCCTCCTGGCTGGGAATGATGGGCAGAATGCAGACATCACTGAC
TCAGGGATTTCAGGTGAGCTGACGGTACGACAGCCCCTGTATGTTGGGGT
GATGACTGCTGGGAAGTTTCTCCACACCAGGGCAACGGCATGCAATAATA
CATGGGGACGGCAAGTCTCAAAGGTGGAGTTTTTCTCCCAACACGGCAGC
TGGGAAGACAACCATCTACCCATCATCTCACTCCCAGGGGTGTCGGATGA
TGTGTACCCCCCACAGGGCAAGGCCTTCCGGATGCTGCAATACGTGTGTC
AGAACCACGGGCAGAGCTACGATTGGTTCATGCGAGCAGACGATGACTCG
TACATCAACGTGGAGAGGCTGCGCAAATTCCTGGGGAAGATAGACAGTAG
CAAGAAGGTGTACATGGGACAGCCCGGCTACGGCTTCCCTGCAGTGCGGC
ACAAGCTGGGGCTGAACGGGAGGAACTTCTGTATGGGAGGGCCTGGGGTC
ATCTTCAGCAGAGCTGCAATACAGGCCCTTTGTCCCCACCTGGACACCTG
TATGGAGGAGGTGATGTCTACAGAGGAGGATGTGGAGATCGGCCGCTGTG
TCACCAACCATCTGCACATACAGTGTACACGGGCATGGGAGTTGACTGAG
CTGTTCTACCATGCCTATGAGGAAGAGTTCAGCGAGGACAGGCCATTCAC
AGGAAACTTGCAGAAAAACAGGCACCTGATGAAGGCATCCATGTGGGTTC
AAGGACACAGAAAACGACCCAGGCTGTCCAGTGTTCTCCACCACAAGTGC
CTGTTACCATTCCTGTCAGGCACCATATTTGGCATAGCGCTGTCAACCAT
ATTTATTCTTCTCCTCATCTCCCTCCTGGCTGGGAATGATGGGCAGAATG
CAGACATCACTGACTCAGGGATTTCAGGTGAGCTGACGGTACGACAGCCC
CTGTATGTTGGGGTGATGACTGCTGGGAAGTTTCTCCACACCAGGGCAAC
GGCATGCAATAATACATGGGGACGGCAAGTCTCAAAGGTGGAGTTTTTCT
CCCAACACGGCAGCTGGGAAGACAACCATCTACCCATCATCTCACTCCCA
GGGGTGTCGGATGATGTGTACCCCCCACAGGGCAAGGCCTTCCGGATGCT
GCAATACGTGTGTCAGAACCACGGGCAGAGCTACGATTGGTTCATGCGAG
CAGACGATGACTCGTACATCAACGTGGAGAGGCTGCGCAAATTCCTGGGG
AAGATAGACAGTAGCAAGAAGGTGTACATGGGACAGCCCGGCTACGGCTT
CCCTGCAGTGCGGCACAAGCTGGGGCTGAACGGGAGGAACTTCTGTATGG
GAGGGCCTGGGGTCATCTTCAGCAGAGCTGCAATACAGGCCCTTTGTCCC
CACCTGGACACCTGTATGGAGGAGGTGATGTCTACAGAGGAGGATGTGGA
GATCGGCCGCTGTGTCACCAACCATCTGCACATACAGTGTACACGGGCAT
GGGAGTTGACTGAGCTGTTCTACCATGCCTATGAGGAAGAGTTCAGCGAG
GACAGGCCATTCACAGGAAACTTGCAGAAAAACAGGCACCTGATGAAGGC
ATCCATGTGGGTTCAAGGACACAGAAAACGACCCAGGCTGTCCAGTGTTC
TCCACCACAAGTGCCTGTTACCATTCCTGTCAGGCACCATATTTGGCATA
GCGCTGTCAACCATATTTATTCTTCTCCTCATCTCCCTCCTGGCTGGGAA
TGATGGGCAGAATGCAGACATCACTGACTCAGGGATTTCAGGTGAGCTGA
CGGTACGACAGCCCCTGTATGTTGGGGTGATGACTGCTGGGAAGTTTCTC
CACACCAGGGCAACGGCATGCAATAATACATGGGGACGGCAAGTCTCAAA
GGTGGAGTTTTTCTCCCAACACGGCAGCTGGGAAGACAACCATCTACCCA
TCATCTCACTCCCAGGGGTGTCGGATGATGTGTACCCCCCACAGGGCAAG
GCCTTCCGGATGCTGCAATACGTGTGTCAGAACCACGGGCAGAGCTACGA
TTGGTTCATGCGAGCAGACGATGACTCGTACATCAACGTGGAGAGGCTGC
GCAAATTCCTGGGGAAGATAGACAGTAGCAAGAAGGTGTACATGGGACAG
CCCGGCTACGGCTTCCCTGCAGTGCGGCACAAGCTGGGGCTGAACGGGAG
GAACTTCTGTATGGGAGGGCCTGGGGTCATCTTCAGCAGAGCTGCAATAC
AGGCCCTTTGTCCCCACCTGGACACCTGTATGGAGGAGGTGATGTCTACA
GAGGAGGATGTGGAGATCGGCCGCTGTGTCACCAACCATCTGCACATACA
GTGTACACGGGCATGGGAGTTGACTGAGCTGTTCTACCATGCCTATGAGG
AAGAGTTCAGCGAGGACAGGCCATTCACAGGAAACTTGCAGAAAAACAGG
CACCTGATGAAGGCATCCATGTGGGTTCAAGGACACAGAAAACGACCCAG
GCTGTCCAGTGTTCTCCACCACAAGTGCCTGTTACCATTCCTGTCAGGCA
CCATATTTGGCATAGCGCTGTCAACCATATTTATTCTTCTCCTCATCTCC
CTCCTGGCTGGGAATGATGGGCAGAATGCAGACATCACTGACTCAGGGAT
TTCAGGTGAGCTGACGGTACGACAGCCCCTGTATGTTGGGGTGATGACTG
CTGGGAAGTTTCTCCACACCAGGGCAACGGCATGCAATAATACATGGGGA
CGGCAAGTCTCAAAGGTGGAGTTTTTCTCCCAACACGGCAGCTGGGAAGA
CAACCATCTACCCATCATCTCACTCCCAGGGGTGTCGGATGATGTGTACC
CCCCACAGGGCAAGGCCTTCCGGATGCTGCAATACGTGTGTCAGAACCAC
GGGCAGAGCTACGATTGGTTCATGCGAGCAGACGATGACTCGTACATCAA
CGTGGAGAGGCTGCGCAAATTCCTGGGGAAGATAGACAGTAGCAAGAAGG
TGTACATGGGACAGCCCGGCTACGGCTTCCCTGCAGTGCGGCACAAGCTG
GGGCTGAACGGGAGGAACTTCTGTATGGGAGGGCCTGGGGTCATCTTCAG
CAGAGCTGCAATACAGGCCCTTTGTCCCCACCTGGACACCTGTATGGAGG
AGGTGATGTCTACAGAGGAGGATGTGGAGATCGGCCGCTGTGTCACCAAC
CATCTGCACATACAGTGTACACGGGCATGGGAGTTGACTGAGCTGTTCTA
CCATGCCTATGAGGAAGAGTTCAGCGAGGACAGGCCATTCACAGGAAACT
TGCAGAAAAACAGGCACCTGATGAAGGCATCCATGTGGGTTCAAGGACAC
AGAAAACGACCCAGGCTGTCCAGTGTTCTCCACCACAAGTGCCTGTTACC
ATTCCTGTCAGGCACCATATTTGGCATAGCGCTGTCAACCATATTTATTC
TTCTCCTCATCTCCCTCCTGGCTGGGAATGATGGGCAGAATGCAGACATC
ACTGACTCAGGGATTTCAGGTGAGCTGACGGTACGACAGCCCCTGTATGT
TGGGGTGATGACTGCTGGGAAGTTTCTCCACACCAGGGCAACGGCATGCA
ATAATACATGGGGACGGCAAGTCTCAAAGGTGGAGTTTTTCTCCCAACAC
GGCAGCTGGGAAGACAACCATCTACCCATCATCTCACTCCCAGGGGTGTC
GGATGATGTGTACCCCCCACAGGGCAAGGCCTTCCGGATGCTGCAATACG
TGTGTCAGAACCACGGGCAGAGCTACGATTGGTTCATGCGAGCAGACGAT
GACTCGTACATCAACGTGGAGAGGCTGCGCAAATTCCTGGGGAAGATAGA
CAGTAGCAAGAAGGTGTACATGGGACAGCCCGGCTACGGCTTCCCTGCAG
TGCGGCACAAGCTGGGGCTGAACGGGAGGAACTTCTGTATGGGAGGGCCT
GGGGTCATCTTCAGCAGAGCTGCAATACAGGCCCTTTGTCCCCACCTGGA
CACCTGTATGGAGGAGGTGATGTCTACAGAGGAGGATGTGGAGATCGGCC
GCTGTGTCACCAACCATCTGCACATACAGTGTACACGGGCATGGGAGTTG
ACTGAGCTGTTCTACCATGCCTATGAGGAAGAGTTCAGCGAGGACAGGCC
ATTCACAGGAAACTTGCAGAAAAACAGGCACCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000002 | genome | Sc0000002:7886808..7891915 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97232_cuf3 |
| Biotype | protein_coding |
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